Methylation status and chromatin structure of the myostatin gene promoter region in the sea perch lateolabrax japonicus (perciformes)

Genetics and Molecular Research

Volumn 10, Issue 4, 2011, Pages 3306-3315

  Abbas, E M ^a   Takayanagi, A ^b,c   Shimizu, N ^c   Kato, M ^a  

^a Osaka Prefecture University   (Japan)

^b KEIO UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^c KEIO UNIVERSITY   (Japan)

Author keywords

Chromatin; DNA methylation; Fish; Micrococcal nuclease; Myostatin

Indexed keywords

CYTOSINE; MICROCOCCAL NUCLEASE; MYOSTATIN; DNA; HYDROGEN SULFITE; SULFITE;

ADULT; ANIMAL TISSUE; ARTICLE; CHROMATIN STRUCTURE; DNA METHYLATION; GENE EXPRESSION; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; LATEOLABRAX JAPONICUS; MYOSTATIN GENE; NONHUMAN; PROMOTER REGION; SOUTHERN BLOTTING; TISSUE SPECIFICITY; ANIMAL; CHROMATIN; CPG ISLAND; DNA FLANKING REGION; DNA SEQUENCE; DRUG EFFECT; GENETICS; GENOME; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PERCH; SEA;

5' FLANKING REGION; ANIMALS; BASE SEQUENCE; BLOTTING, SOUTHERN; CHROMATIN; CONSERVED SEQUENCE; CPG ISLANDS; DNA; DNA METHYLATION; GENOME; MICROCOCCAL NUCLEASE; MOLECULAR SEQUENCE DATA; MYOSTATIN; OCEANS AND SEAS; PERCHES; PROMOTER REGIONS, GENETIC; SEQUENCE ANALYSIS, DNA; SULFITES;

EID: 84865651815     PISSN: None     EISSN: 16765680     Source Type: Journal    
DOI: 10.4238/2011.December.8.7     Document Type: Article

References (40)

1. Acosta J, Carpio Y, Borroto I, Gonzalez O, et al. (2005). Myostatin gene silenced by RNAi show a zebrafish giant phenotype. J. Biotechnol. 119: 324-331.
2. Biga PR, Roberts SB, Iliev DB, McCauley LA, et al. (2005). The isolation, characterization, and expression of a novel GDF11 gene and a second myostatin form in zebrafish, Danio rerio. Comp. Biochem. Physiol. B Biochem. Mol. Biol. 141: 218-230.
3. Clark SJ, Harrison J, Paul CL and Frommer M (1994). High sensitivity mapping of methylated cytosines. Nucleic Acids Res. 22: 2990-2997.
4. Ehrlich M, Norris KF, Wang RY, Kuo KC, et al. (1986). DNA cytosine methylation and heat-induced deamination. Biosci. Rep. 6: 387-393.
5. Felsenfeld G and Groudine M (2003). Controlling the double helix. Nature 421: 448-453.
6. Funkenstein B, Balas V, Rebhan Y and Pliatner A (2009). Characterization and functional analysis of the 5' flanking region of Sparus aurata myostatin-1 gene. Comp. Biochem. Physiol. A Mol. Integr. Physiol. 153: 55-62.
7. Goll MG and Bestor TH (2005). Eukaryotic cytosine methyltransferases. Annu. Rev. Biochem. 74: 481-514.
8. Gregory DJ, Waldbieser GC and Bosworth BG (2004). Cloning and characterization of myogenic regulatory genes in three Ictalurid species. Anim. Genet. 35: 425-430.
9. Helterline DL, Garikipati D, Stenkamp DL and Rodgers BD (2007). Embryonic and tissue-specific regulation of myostatin-1 and-2 gene expression in zebrafish. Gen. Comp. Endocrinol. 151: 90-97.
10. Jaenisch R and Bird A (2003). Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals. Nat. Genet. 33: 245-254.
11. Kerr T, Roalson EH and Rodgers BD (2005). Phylogenetic analysis of the myostatin gene sub-family and the differential expression of a novel member in zebrafish. Evol. Dev. 7: 390-400.
12. Klose RJ and Bird AP (2006). Genomic DNA methylation: the mark and its mediators. Trends Biochem. Sci. 31: 89-97.
13. Ko CF, Chiou TT, Chen TT, Wu JL, et al. (2007). Molecular cloning of myostatin gene and characterization of tissue-specific and developmental stage-specific expression of the gene in orange spotted grouper, Epinephelus coioides. Mar. Biotechnol. 9: 20-32.
14. Kocabas AM, Kucuktas H, Dunham RA and Liu Z (2002). Molecular characterization and differential expression of the myostatin gene in channel catfish (Ictalurus punctatus). Biochim. Biophys. Acta 1575: 99-107.
15. Kuroda A, Rauch TA, Todorov I, Ku HT, et al. (2009). Insulin gene expression is regulated by DNA methylation. PLoS One 4: e6953.
16. Lee CY, Hu SY, Gong HY, Chen MH, et al. (2009). Suppression of myostatin with vector-based RNA interference causes a double-muscle effect in transgenic zebrafish. Biochem. Biophys. Res. Commun. 387: 766-771.
17. Lee SJ (2004). Regulation of muscle mass by myostatin. Annu. Rev. Cell Dev. Biol. 20: 61-86.
18. Li E (2002). Chromatin modification and epigenetic reprogramming in mammalian development. Nat. Rev. Genet. 3: 662-673.
19. Maccatrozzo L, Bargelloni L, Radaelli G, Mascarello F, et al. (2001a). Characterization of the myostatin gene in the gilthead seabream (Sparus aurata): sequence, genomic structure, and expression pattern. Mar. Biotechnol. 3: 224-230.
20. Maccatrozzo L, Bargelloni L, Cardazzo B, Rizzo G, et al. (2001b). A novel second myostatin gene is present in teleost fish. FEBS Lett. 509: 36-40.
21. MacLeod D, Clark VH and Bird A (1999). Absence of genome-wide changes in DNA methylation during development of the zebrafish. Nat. Genet. 23: 139-140.
22. Østbye TK, Galloway TF, Nielsen C, Gabestad I, et al. (2001). The two myostatin genes of Atlantic salmon (Salmo salar) are expressed in a variety of tissues. Eur. J. Biochem. 268: 5249-5257.
23. Østbye TK, Wetten OF, Tooming-Klunderud A, Jakobsen KS, et al. (2007). Myostatin (MSTN) gene duplications in Atlantic salmon (Salmo salar): evidence for different selective pressure on teleost MSTN-1 and-2. Gene 403: 159-169.
24. Radaelli G, Rowlerson A, Mascarello F, Patruno M, et al. (2003). Myostatin precursor is present in several tissues in teleost fish: a comparative immunolocalization study. Cell Tissue Res. 311: 239-250.
25. Reik W (2007). Stability and flexibility of epigenetic gene regulation in mammalian development. Nature 447: 425-432.
26. Rescan PY, Jutel I and Ralliere C (2001). Two myostatin genes are differentially expressed in myotomal muscles of the trout (Oncorhynchus mykiss). J. Exp. Biol. 204: 3523-3529.
27. Roberts SB and Goetz FW (2003). Myostatin protein and RNA transcript levels in adult and developing brook trout. Mol. Cell Endocrinol. 210: 9-20.
28. Rodgers BD and Weber GM (2001). Sequence conservation among fish myostatin orthologues and the characterization of two additional cDNA clones from Morone saxatilis and Morone americana. Comp. Biochem. Physiol. B Biochem. Mol. Biol. 129: 597-603.
29. Rodgers BD, Weber GM, Sullivan CV and Levine MA (2001). Isolation and characterization of myostatin complementary deoxyribonucleic acid clones from two commercially important fish: Oreochromis mossambicus and Morone chrysops. Endocrinology 142: 1412-1418.
30. Sambrook J and Russell DW (2001). Molecular Cloning, A Laboratory Manual. 3rd edn. Cold Spring Harbor Laboratory Press, New York.
31. Sawatari E, Seki R, Adachi T, Hashimoto H, et al. (2010). Overexpression of the dominant-negative form of myostatin results in doubling of muscle-fiber number in transgenic medaka (Oryzias latipes). Comp. Biochem. Physiol. A Mol. Integr. Physiol. 155: 183-189.
32. Southern EM (1975). Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. Mol. Biol. 98: 503-517.
33. Strömqvist M, Tooke N and Brunstrom B (2010). DNA methylation levels in the 5' flanking region of the vitellogenin I gene in liver and brain of adult zebrafish (Danio rerio)-sex and tissue differences and effects of 17alpha-ethinylestradiol exposure. Aquat. Toxicol. 98: 275-281.
34. Tata JR and Baker B (1978). Enzymatic fractionation of nuclei: polynucleosomes and RNA polymerase II as endogenous transcriptional complexes. J. Mol. Biol. 118: 249-272.
35. Vianello S, Brazzoduro L, Dalla VL, Belvedere P, et al. (2003). Myostatin expression during development and chronic stress in zebrafish (Danio rerio). J. Endocrinol. 176: 47-59.
36. Walter RB, Li HY, Intano GW, Kazianis S, et al. (2002). Absence of global genomic cytosine methylation pattern erasure during medaka (Oryzias latipes) early embryo development. Comp. Biochem. Physiol. B Biochem. Mol. Biol. 133: 597-607.
37. Weber M, Hellmann I, Stadler MB, Ramos L, et al. (2007). Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome. Nat. Genet. 39: 457-466.
38. Xu C, Wu G, Zohar Y and Du SJ (2003). Analysis of myostatin gene structure, expression and function in zebrafish. J. Exp. Biol. 206: 4067-4079.
39. Ye HQ, Chen SL, Sha ZX and Liu Y (2007). Molecular cloning and expression analysis of the myostatin gene in sea perch (Lateolabrax japonicus). Mar. Biotechnol. (NY) 9: 262-272.
40. Zhang Y, Jurkowska R, Soeroes S, Rajavelu A, et al. (2010). Chromatin methylation activity of Dnmt3a and Dnmt3a/3L is guided by interaction of the ADD domain with the histone H3 tail. Nucleic Acids Res. 38: 4246-4253.