-
1
-
-
77956520011
-
Functional roles for noise in genetic circuits
-
doi:10.1038/nature09326
-
E Avigdor, M Elowitz, Functional roles for noise in genetic circuits. Nature. 467, 167-173 (2010). doi:10.1038/nature09326
-
(2010)
Nature.
, vol.467
, pp. 167-173
-
-
Avigdor, E.1
Elowitz, M.2
-
2
-
-
41349119880
-
Stochastic switching as a survival strategy in fluctuating environments
-
doi:10.1038/ng.110
-
M Acar, J Mettetal, A van Oudenaarden, Stochastic switching as a survival strategy in fluctuating environments. Nat Gen. 40, 471-475 (2008). doi:10.1038/ng.110
-
(2008)
Nat Gen.
, vol.40
, pp. 471-475
-
-
Acar, M.1
Mettetal, J.2
Van Oudenaarden, A.3
-
3
-
-
58549110229
-
Determination of cell fate selection during phage lambda infection
-
doi:10.1073/ pnas.0808831105
-
F St-Pierre, D Endy, Determination of cell fate selection during phage lambda infection. PNAS. 105, 20705-20710 (2008). doi:10.1073/ pnas.0808831105
-
(2008)
PNAS
, vol.105
, pp. 20705-20710
-
-
St-Pierre, F.1
Endy, D.2
-
4
-
-
33745451921
-
Oscillations and variability in the p53 system
-
doi: 10.1038/msb4100068
-
N Geva-Zatorsky, N Rosenfeld, S Itzkovitz, R Milo, A Sigal, E Dekel, T Yarnitzky, Y Liron, P Polak, G Lahav, U Alon, Oscillations and variability in the p53 system. Mol Syst Biol. 2. 2006.0033, (2006) doi: 10.1038/msb4100068
-
(2006)
Mol Syst Biol
, vol.2
, Issue.2006
, pp. 0033
-
-
Geva-Zatorsky, N.1
Rosenfeld, N.2
Itzkovitz, S.3
Milo, R.4
Sigal, A.5
Dekel, E.6
Yarnitzky, T.7
Liron, Y.8
Polak, P.9
Lahav, G.10
Alon, U.11
-
5
-
-
62549143473
-
Logical analysis of the budding yeast cell cycle
-
doi:10.1016/j.jtbi.2008.12.028
-
D Irons, Logical analysis of the budding yeast cell cycle. J Theor Biol. 257, 543-559 (2009). doi:10.1016/j.jtbi.2008.12.028
-
(2009)
J Theor Biol.
, vol.257
, pp. 543-559
-
-
Irons, D.1
-
7
-
-
27544505428
-
Qualtative AalysisofRegulatory Graphs: A Computational Tool Based on a Discrete Formal Framework
-
C Chaouiya, E Remy, B Mossé, D Thiery, Qualtative AalysisofRegulatory Graphs: A Computational Tool Based on a Discrete Formal Framework, Lecture Notes in Control and Information Sciences, 294, 830-832 (2003)
-
(2003)
Lecture Notes in Control and Information Sciences
, vol.294
, pp. 830-832
-
-
Chaouiya, C.1
Remy, E.2
Mossé, B.3
Thiery, D.4
-
8
-
-
0036184629
-
Probabilistic Boolean networks: A rule based uncertainty model for gene regulatory networks
-
doi:10.1093/bioinformatics/18.2.261
-
I Shmulevich, E Dougherty, S Kim, W Zhang, Probabilistic Boolean networks: a rule based uncertainty model for gene regulatory networks. Bioinformatics. 18(2), 261-274 (2002). doi:10.1093/bioinformatics/18.2.261
-
(2002)
Bioinformatics.
, vol.18
, Issue.2
, pp. 261-274
-
-
Shmulevich, I.1
Dougherty, E.2
Kim, S.3
Zhang, W.4
-
10
-
-
84855215977
-
Stochastic binary modeling of cells in continuous time as an alternative to biochemical reaction equations
-
S Teraguchi, Y Kumagai, A Vandenbon, S Akira, D Standley, Stochastic binary modeling of cells in continuous time as an alternative to biochemical reaction equations. Phys Rev E. 84(4) 062903 (2011)
-
(2011)
Phys Rev e
, vol.84
, Issue.4
, pp. 062903
-
-
Teraguchi, S.1
Kumagai, Y.2
Vandenbon, A.3
Akira, S.4
Standley, D.5
-
11
-
-
66349086263
-
Modeling stochasticity and robustness in gene regulatory networks
-
i101-i109
-
A Garg, K Mohanram, A Di Cara, G De Micheli, I Xenarios, Modeling stochasticity and robustness in gene regulatory networks. Bioinformatics. 15;25(12), i101\-i109 (2010)
-
(2010)
Bioinformatics.
, vol.15
, Issue.12
, pp. 25
-
-
Garg, A.1
Mohanram, K.2
Di Cara, A.3
De Micheli, G.4
Xenarios, I.5
-
12
-
-
34447548696
-
Noisy attractors and ergodic sets in models of gene regulatory networks
-
doi:10.1016/j jtbi2007.04.020
-
AS Ribeiro, SA Kauffman, Noisy attractors and ergodic sets in models of gene regulatory networks. J Theor Biol. 247, 743-755 (2007). doi:10.1016/j jtbi2007.04.020
-
(2007)
J Theor Biol.
, vol.247
, pp. 743-755
-
-
Ribeiro, A.S.1
Kauffman, S.A.2
-
13
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
doi:10.1021/j100540a008
-
D Gillespie, Exact stochastic simulation of coupled chemical reactions. J Phys Chem. 81 (25), 2340-2361 (1977). doi:10.1021/j100540a008
-
(1977)
J Phys Chem.
, vol.81
, Issue.25
, pp. 2340-2361
-
-
Gillespie, D.1
-
14
-
-
34249950625
-
Stochastic simulation of chemical kinetics
-
doi:10.1146/annurev.physchem.58.032806.104637
-
D Gillespie, Stochastic simulation of chemical kinetics. Annu Rev Phys Chem. 58, 35-55 (2007). doi:10.1146/annurev.physchem.58.032806.104637
-
(2007)
Annu Rev Phys Chem.
, vol.58
, pp. 35-55
-
-
Gillespie, D.1
-
15
-
-
26844581913
-
Delay-induced stochastic oscillations gene regulation
-
doi:10.1073/pnas.0503858102
-
D Bratsun, D Volfson, LS Tsimring, J Hasty, delay-induced stochastic oscillations gene regulation. PNAS. 102(41), 14593-14598 (2005). doi:10.1073/pnas.0503858102
-
(2005)
PNAS
, vol.102
, Issue.41
, pp. 14593-14598
-
-
Bratsun, D.1
Volfson, D.2
Tsimring, L.S.3
Hasty, J.4
-
16
-
-
72449206548
-
Stochastic and delayed stochastic models ofgene expression and regulation
-
doi:10.1016/j mbs2009.10.007
-
AS Ribeiro, Stochastic and delayed stochastic models ofgene expression and regulation. Math Biosci. 223(1), 1-11 (2010). doi:10.1016/j mbs2009.10.007
-
(2010)
Math Biosci.
, vol.223
, Issue.1
, pp. 1-11
-
-
Ribeiro, A.S.1
-
17
-
-
33845369407
-
A general modeling strategy for gene regulatory networks with stochastic dynamics
-
doi:10.1089/cmb2006.13.1630
-
AS Ribeiro, R Zhu, SA Kauffman, A general modeling strategy for gene regulatory networks with stochastic dynamics. J Comput Biol. 13(9), 1630-1639 (2006). doi:10.1089/cmb2006.13.1630
-
(2006)
J Comput Biol.
, vol.13
, Issue.9
, pp. 1630-1639
-
-
Ribeiro, A.S.1
Zhu, R.2
Kauffman, S.A.3
-
18
-
-
30744478219
-
Noise in a small genetic circuit that undergoes bifurcation
-
doi:10.1002/ cplx20099
-
T Toulouse, P Ao, I Shmulevich, S Kauffman, Noise in a small genetic circuit that undergoes bifurcation. Complexity. 11(1),45-51 (2005). doi:10.1002/ cplx20099
-
(2005)
Complexity.
, vol.11
, Issue.1
, pp. 45-51
-
-
Toulouse, T.1
Ao, P.2
Shmulevich, I.3
Kauffman, S.4
-
19
-
-
56149104549
-
Floral morphogenesis: Stochastic explorations of a gene network epigenetic landscape
-
doi:10.1371/journal. pone.0003626
-
ER Álvarez-Buylla, A Chaos, M Aldana, M Benítez, Y Cortes-Poza, C Espinosa-Soto, DA Hartasánchez, RB Lotto, D Malkin, GJ Escalera Santos, P Padilla-Longoria, Floral morphogenesis: stochastic explorations of a gene network epigenetic landscape. PLoS ONE. 3(11), e3626 (2008). doi:10.1371/journal. pone.0003626
-
(2008)
PLoS ONE.
, vol.3
, Issue.11
-
-
Álvarez-Buylla, E.R.1
Chaos, A.2
Aldana, M.3
Benítez, M.4
Cortes-Poza, Y.5
Espinosa-Soto, C.6
Hartasánchez, D.A.7
Lotto, R.B.8
Malkin, D.9
Escalera Santos, G.J.10
Padilla-Longoria, P.11
-
20
-
-
45849093636
-
Boolean network model predicts cell cycle sequence of fission yeast
-
doi:10.1371/journal. pone.0001672
-
MI Davidich, S Bornholdt, Boolean network model predicts cell cycle sequence of fission yeast. PLoS ONE. 3(2), e1672 (2008). doi:10.1371/journal. pone.0001672
-
(2008)
PLoS ONE.
, vol.3
, Issue.2
-
-
Davidich, M.I.1
Bornholdt, S.2
-
21
-
-
36248985686
-
Robustness and state-space structure of Boolean gene regulator models
-
K Willadsen, J Wiles, Robustness and state-space structure of Boolean gene regulator models. J Theor Biol. 249(4), 749-765 (2008)
-
(2008)
J Theor Biol.
, vol.249
, Issue.4
, pp. 749-765
-
-
Willadsen, K.1
Wiles, J.2
-
22
-
-
68549104407
-
Adaptive intervention in probabilistic Boolean networks
-
doi:10.1093/ bioinformatics/btp349
-
R Layek, A Datta, R Pal, ER Dougherty, Adaptive intervention in probabilistic Boolean networks. Bioinformatics. 25(16), 2042-2048 (2009). doi:10.1093/ bioinformatics/btp349
-
(2009)
Bioinformatics.
, vol.25
, Issue.16
, pp. 2042-2048
-
-
Layek, R.1
Datta, A.2
Pal, R.3
Dougherty, E.R.4
-
23
-
-
0036790975
-
Intrinsic and extrinsic contributions to stochasticity in gene expression
-
doi:10.1073/pnas.162041399
-
SS Peter, BE Michael, DS Eric, Intrinsic and extrinsic contributions to stochasticity in gene expression. PNAS. 99(20), 12795-12800 (2002). doi:10.1073/pnas.162041399
-
(2002)
PNAS
, vol.99
, Issue.20
, pp. 12795-12800
-
-
Peter, S.S.1
Michael, B.E.2
Eric, D.S.3
-
24
-
-
79960563993
-
ADAM: Analysis of the dynamics of algebraic models of biological systems using computer algebra
-
doi:10.1186/1471-2105-12295
-
F Hinkelmann, M Brandon, B Guang, R McNeill, G Blekherman, A Veliz-Cuba, R Laubenbacher, ADAM: analysis of the dynamics of algebraic models of biological systems using computer algebra. BMC Bioinf. 12, 295 (2011). doi:10.1186/1471-2105-12295
-
(2011)
BMC Bioinf.
, vol.12
, Issue.295
-
-
Hinkelmann, F.1
Brandon, M.2
Guang, B.3
McNeill, R.4
Blekherman, G.5
Veliz-Cuba, A.6
Laubenbacher, R.7
-
25
-
-
67349272002
-
From structure to dynamics: Frequency tuning in the p53-mdm2 network: I. logical approach
-
doi:10.1016/j.jtbi2009.02.005
-
W Abou-Jaoudé, D Ouattara, M Kaufman, From structure to dynamics: frequency tuning in the p53-mdm2 network: I. logical approach. J Theor Biol. 258(4), 561-577 (2009). doi:10.1016/j.jtbi2009.02.005
-
(2009)
J Theor Biol.
, vol.258
, Issue.4
, pp. 561-577
-
-
Abou-Jaoudé, W.1
Ouattara, D.2
Kaufman, M.3
-
26
-
-
67349091738
-
The ups and downs of p53: Understanding protein dynamics in single cells
-
doi:10.1038/nrc2604
-
E Batchelor, A Loewer, G Lahav, The ups and downs of p53: understanding protein dynamics in single cells. Nat Rev Cancer. 9, 371-377 (2009). doi:10.1038/nrc2604
-
(2009)
Nat Rev Cancer.
, vol.9
, pp. 371-377
-
-
Batchelor, E.1
Loewer, A.2
Lahav, G.3
-
28
-
-
0029267492
-
Dynamical behaviour of biological regulatory networks-II. Immunity control in bacteriophage lambda
-
D Thiery, R Thomas, Dynamical behaviour of biological regulatory networks-II. Immunity control in bacteriophage lambda. Bull Math Biol. 57, 277-295 (1995)
-
(1995)
Bull Math Biol
, vol.57
, pp. 277-295
-
-
Thiery, D.1
Thomas, R.2
-
29
-
-
0015119211
-
Control of a; Repressor synthesis
-
doi:10.1073/pnas.68.92185
-
L Reichardt, D Kaiser, Control of a; repressor synthesis. PNAS. 68, 2185-2189 (1971).doi:10.1073/pnas.68.92185
-
(1971)
PNAS
, vol.68
, pp. 2185-2189
-
-
Reichardt, L.1
Kaiser, D.2
-
30
-
-
0015921475
-
Lysogenization by bacteriophage lambda I. Multiple infection and the lysogenic response
-
doi:10.1007/BF00435190
-
P Kourilsky, Lysogenization by bacteriophage lambda I. Multiple infection and the lysogenic response. Mol Gen Gen. 122, 183-195 (1973). doi:10.1007/BF00435190
-
(1973)
Mol Gen Gen.
, vol.122
, pp. 183-195
-
-
Kourilsky, P.1
-
31
-
-
0031879114
-
Stochastic kinetic analysis of developmental pathway bifurcation in Phage a;-infected Escherichia coli cells
-
A Arkin, J Ross, H McAdams, Stochastic kinetic analysis of developmental pathway bifurcation in Phage a;-infected Escherichia coli cells. Genetics. 149, 1633-1648 (1998)
-
(1998)
Genetics
, vol.149
, pp. 1633-1648
-
-
Arkin, A.1
Ross, J.2
McAdams, H.3
|