메뉴 건너뛰기




Volumn 223, Issue 7, 2012, Pages 4233-4243

The selection exerted by oil contamination on mangrove fungal communities

Author keywords

Bioremediation; Fungi; ITS; Oil spill; PCR DGGE; Tropical microbiology

Indexed keywords

CLADOSPORIUM; CORRESPONDENCE ANALYSIS; FUNGAL COMMUNITY; FUNGAL SPECIES; INTERNAL TRANSCRIBED SPACERS; ITS; MANGROVE ECOSYSTEMS; MANGROVE FOREST; OIL CONTAMINATION; PCR-DGGE; QUANTITATIVE PCR; SAO PAULO; TROPICAL ENVIRONMENTS; VISUAL OBSERVATIONS;

EID: 84865421633     PISSN: 00496979     EISSN: 15732932     Source Type: Journal    
DOI: 10.1007/s11270-012-1187-4     Document Type: Article
Times cited : (18)

References (35)
  • 1
    • 0008698843 scopus 로고
    • Bacterial productivity and microbial biomass in tropical mangrove sediments
    • 10.1007/BF02012952
    • DM Alongi 1988 Bacterial productivity and microbial biomass in tropical mangrove sediments Microbial Ecology 15 59 79 10.1007/BF02012952
    • (1988) Microbial Ecology , vol.15 , pp. 59-79
    • Alongi, D.M.1
  • 2
    • 0036762277 scopus 로고    scopus 로고
    • Present state and future of the world's mangrove forests
    • DOI 10.1017/S0376892902000231
    • DM Alongi 2002 Present state and future of the world's mangrove forests Australian Institute Marine Science 29 331 349 (Pubitemid 35447371)
    • (2002) Environmental Conservation , vol.29 , Issue.3 , pp. 331-349
    • Alongi, D.M.1
  • 3
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • DOI 10.1093/nar/25.17.3389
    • SF Altschul TL Madden AA Schaffer J Zhang Z Zhang W Miller DJ Lipman 1997 Gapped BLAST and PSIBLAST: a new generation of protein database search programs Nucleic Acids Research 25 3389 3402 10.1093/nar/25.17.3389 1:CAS:528: DyaK2sXlvFyhu7w%3D (Pubitemid 27359211)
    • (1997) Nucleic Acids Research , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 4
    • 15044361525 scopus 로고    scopus 로고
    • Diversity of filamentous fungi on decomposing leaf and woody litter of mangrove forests in the southwest coast of India
    • K Ananda KR Sridhar 2004 Diversity of filamentous fungi on decomposing leaf and woody litter of mangrove forests in the southwest coast of India Current Science 87 1431 1437 (Pubitemid 40374415)
    • (2004) Current Science , vol.87 , Issue.10 , pp. 1431-1437
    • Ananda, K.1    Sridhar, K.R.2
  • 5
    • 0242507686 scopus 로고    scopus 로고
    • Diversity of fungi in organic soils under a moorland - Scots pine (Pinus sylvestris L.) gradient
    • DOI 10.1046/j.1462-2920.2003.00522.x
    • IC Anderson CD Campbell JI Prosser 2003 Diversity of fungi in organic soils under a moorland-Scots pine (Pinus Sylvestris L.) gradient Environmental Microbiology 5 1121 1132 10.1046/j.1462-2920.2003.00522.x (Pubitemid 37417784)
    • (2003) Environmental Microbiology , vol.5 , Issue.11 , pp. 1121-1132
    • Anderson, I.C.1    Campbell, C.D.2    Prosser, J.I.3
  • 6
    • 0037224886 scopus 로고    scopus 로고
    • Potential bias of fungal 18s rDNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil
    • DOI 10.1046/j.1462-2920.2003.00383.x
    • IC Anderson CD Campbell JI Prosser 2003 Potential bias of fungal 18S rDNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil Environmental Microbiology 5 36 47 10.1046/j.1462-2920.2003.00383.x 1:CAS:528:DC%2BD3sXhs1WntbY%3D (Pubitemid 36345744)
    • (2003) Environmental Microbiology , vol.5 , Issue.1 , pp. 36-47
    • Anderson, I.C.1    Campbell, C.D.2    Prosser, J.I.3
  • 7
    • 70349492669 scopus 로고    scopus 로고
    • Assessing the diversity of bacterial communities associated with plants
    • 10.1590/S1517-83822009000300001 1:CAS:528:DC%2BC3MXit1yjsL0%3D
    • FD Andreote JL Azevedo WL Araújo 2009 Assessing the diversity of bacterial communities associated with plants Brazilian Journal of Microbiology 40 417 432 10.1590/S1517-83822009000300001 1:CAS:528:DC%2BC3MXit1yjsL0%3D
    • (2009) Brazilian Journal of Microbiology , vol.40 , pp. 417-432
    • Andreote, F.D.1    Azevedo, J.L.2    Araújo, W.L.3
  • 8
    • 71049136465 scopus 로고    scopus 로고
    • Bioemulsifier production by Microbacterium sp. strains isolated from mangrove and their application to remove cadmiun and zinc from hazardous industrial residue
    • 10.1590/S1517-83822010000100033 1:CAS:528:DC%2BC3MXit1yju7o%3D
    • E Aniszewski RS Peixoto FF Mota SGF Leite AS Rosado 2010 Bioemulsifier production by Microbacterium sp. strains isolated from mangrove and their application to remove cadmiun and zinc from hazardous industrial residue Brazilian Journal of Microbiology 41 235 245 10.1590/S1517-83822010000100033 1:CAS:528:DC%2BC3MXit1yju7o%3D
    • (2010) Brazilian Journal of Microbiology , vol.41 , pp. 235-245
    • Aniszewski, E.1    Peixoto, R.S.2    Mota, F.F.3    Leite, S.G.F.4    Rosado, A.S.5
  • 9
    • 84855289503 scopus 로고    scopus 로고
    • Multiple markers pyrosequencing reveals highly diverse and host-specific fungal communities on the mangrove trees Avicennia marina and Rhizophora stylosa
    • 10.1111/j.1574-6941.2011.01236.x
    • Y Arfi M Buée C Marchand A Levasseur E Record 2012 Multiple markers pyrosequencing reveals highly diverse and host-specific fungal communities on the mangrove trees Avicennia marina and Rhizophora stylosa FEMS Microbiology Ecology 79 433 444 10.1111/j.1574-6941.2011.01236.x
    • (2012) FEMS Microbiology Ecology , vol.79 , pp. 433-444
    • Arfi, Y.1    Buée, M.2    Marchand, C.3    Levasseur, A.4    Record, E.5
  • 10
    • 0028369691 scopus 로고
    • Mechanisms white rot fungi use to degrade pollutants
    • DP Barr SD Aust 1994 Mechanisms white rot fungi use to degrade pollutants Environmental Science and Technology 28 78A 87A 1:CAS:528:DyaK2cXhtFGktL8%3D (Pubitemid 24064285)
    • (1994) Environmental Science and Technology , vol.28 , Issue.2
    • Barr, D.P.1    Aust, S.D.2
  • 11
    • 33745303955 scopus 로고    scopus 로고
    • Marine microbial diversity and ecology: Importance and future perspectives
    • S Das PS Lyla S Ajmal-Khan 2006 Marine microbial diversity and ecology: importance and future perspectives Current Science 90 1325 1335 1:CAS:528:DC%2BD28Xmtl2gt7k%3D (Pubitemid 43938783)
    • (2006) Current Science , vol.90 , Issue.10 , pp. 1325-1335
    • Das, S.1    Lyla, P.S.2    Khan, S.A.3
  • 15
    • 33747810433 scopus 로고    scopus 로고
    • Multiple secondary origins of the anaerobic lifestyle in eukaryotes
    • DOI 10.1098/rstb.2006.1844
    • TM Embley 2006 Multiple secondary origins of the anaerobic lifestyle in eukaryotes Philosophical Transactions of the Royal Society B: Biological Sciences 361 1055 1067 10.1098/rstb.2006.1844 1:CAS:528:DC%2BD28XotFeitrc%3D (Pubitemid 44858915)
    • (2006) Philosophical Transactions of the Royal Society B: Biological Sciences , vol.361 , Issue.1470 , pp. 1055-1067
    • Embley, T.M.1
  • 16
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • 10.2307/2408678
    • J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 783 791 10.2307/2408678
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 17
    • 77955924294 scopus 로고    scopus 로고
    • Spatial patterns of soil attributes and components in a mangrove system in Southeast Brazil (São Paulo)
    • 10.1007/s11368-010-0224-4 1:CAS:528:DC%2BC3cXhtVSis77L
    • TO Ferreira XL Otero VS Souza Jr P Vidal-Torrado F Macías LP Firme 2010 Spatial patterns of soil attributes and components in a mangrove system in Southeast Brazil (São Paulo) Journal of Soil and Sediments 10 995 1006 10.1007/s11368-010-0224-4 1:CAS:528:DC%2BC3cXhtVSis77L
    • (2010) Journal of Soil and Sediments , vol.10 , pp. 995-1006
    • Ferreira, T.O.1    Otero, X.L.2    Souza Jr., V.S.3    Vidal-Torrado, P.4    MacÍas, F.5    Firme, L.P.6
  • 18
    • 0026639023 scopus 로고
    • Biodegradation of polycyclic aromatic hydrocarbons by new isolates of white rot fungi
    • 1:CAS:528:DyaK38XltVOqtrg%3D
    • JA Field E DeJong GF Costa JAM DeBont 1992 Biodegradation of polycyclic aromatic hydrocarbons by new isolates of white rot fungi Applied and Environmental Microbiology 58 2219 2226 1:CAS:528:DyaK38XltVOqtrg%3D
    • (1992) Applied and Environmental Microbiology , vol.58 , pp. 2219-2226
    • Field, J.A.1    Dejong, E.2    Costa, G.F.3    Debont, J.A.M.4
  • 19
    • 22144470189 scopus 로고    scopus 로고
    • Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays
    • DOI 10.1128/AEM.71.7.4117-4120.2005
    • N Fierer JA Jackson R Vilgalys RB Jackson 2005 Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays Applied and Environmental Microbiology 71 4117 4120 10.1128/AEM.71.7.4117-4120. 2005 1:CAS:528:DC%2BD2MXmt1yksrs%3D (Pubitemid 40980588)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.7 , pp. 4117-4120
    • Fierer, N.1    Jackson, J.A.2    Vilgalys, R.3    Jackson, R.B.4
  • 20
    • 78649519700 scopus 로고    scopus 로고
    • Taking root: Enduring effect of rhizosphere bacterial colonization in mangroves
    • 10.1371/journal.pone.0014065
    • NCM Gomes DFR Cleary FN Pinto C Egas A Almeida, et al. 2010 Taking root: enduring effect of rhizosphere bacterial colonization in mangroves PLoS One 5 e14065 10.1371/journal.pone.0014065
    • (2010) PLoS One , vol.5 , pp. 14065
    • Gomes, N.C.M.1    Cleary, D.F.R.2    Pinto, F.N.3    Egas, C.4    Almeida, A.5
  • 21
    • 79951852806 scopus 로고    scopus 로고
    • Untapped potential: Exploiting fungi in bioremediation of hazardous chemicals
    • 10.1038/nrmicro2519 1:CAS:528:DC%2BC3MXhsF2jsr0%3D
    • H Harms D Schlosser LY Wick 2011 Untapped potential: exploiting fungi in bioremediation of hazardous chemicals Nature Review Microbiology 9 177 192 10.1038/nrmicro2519 1:CAS:528:DC%2BC3MXhsF2jsr0%3D
    • (2011) Nature Review Microbiology , vol.9 , pp. 177-192
    • Harms, H.1    Schlosser, D.2    Wick, L.Y.3
  • 22
    • 0035037353 scopus 로고    scopus 로고
    • The role of sediment microorganisms in the productivity, conservation, and rehabilitation of mangrove ecosystems: An overview
    • DOI 10.1007/s003740000319
    • G Holguin P Vazquez Y Bashan 2001 The role of sediment microorganisms in the productivity, conservation, and rehabilitation of mangrove ecosystems: an overview Biology and Fertility of Soils 33 265 278 10.1007/s003740000319 1:CAS:528:DC%2BD3MXhs1Ggsbo%3D (Pubitemid 32375844)
    • (2001) Biology and Fertility of Soils , vol.33 , Issue.4 , pp. 265-278
    • Holguin, G.1    Vazquez, P.2    Bashan, Y.3
  • 24
    • 16644376320 scopus 로고    scopus 로고
    • Biology of mangroves and mangrove ecosystems
    • K Kathiresan BL Bingham 2001 Biology of Mangroves and Mangrove Ecosystems Advances in Marine Biology 40 81 251 10.1016/S0065-2881(01)40003-4 (Pubitemid 33718606)
    • (2001) Advances in Marine Biology , vol.40 , pp. 81-251
    • Bingham, B.L.1
  • 25
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • DOI 10.1007/BF01731581
    • M Kimura 1980 A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences Journal of Molecular Evolution 16 111 120 10.1007/BF01731581 1:CAS:528:DyaL3MXmtFSktg%3D%3D (Pubitemid 11166431)
    • (1980) Journal of Molecular Evolution , vol.16 , Issue.2 , pp. 111-120
    • Kimura, M.1
  • 26
    • 33846512283 scopus 로고    scopus 로고
    • Recovery of novel bacterial diversity from mangrove sediment
    • DOI 10.1007/s00227-006-0377-2
    • JB Liang YQ Chen CY Lan NFY Tam QJ Zan LN Huang 2007 Recovery of novel bacterial diversity from mangrove sediment Marine Biology 150 739 747 10.1007/s00227-006-0377-2 (Pubitemid 46155603)
    • (2007) Marine Biology , vol.150 , Issue.5 , pp. 739-747
    • Liang, J.-B.1    Chen, Y.-Q.2    Lan, C.-Y.3    Tam, N.F.Y.4    Zan, Q.-J.5    Huang, L.-N.6
  • 27
    • 56749110025 scopus 로고    scopus 로고
    • The role of fungi in marine detrital processes
    • N. Ramaiah (eds). National Institute of Oceanography Goa
    • Raghukumar, S. (2004). The role of fungi in marine detrital processes. In N. Ramaiah (Ed.), Marine microbiology: facets and opportunities (pp. 91-101). Goa: National Institute of Oceanography.
    • (2004) Marine Microbiology: Facets and Opportunities , pp. 91-101
    • Raghukumar, S.1
  • 29
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • 1:STN:280:DyaL1c7ovFSjsA%3D%3D
    • N Saitou M Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees Molecular Biology and Evolution 4 406 425 1:STN:280:DyaL1c7ovFSjsA%3D%3D
    • (1987) Molecular Biology and Evolution , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 30
    • 79951957439 scopus 로고    scopus 로고
    • Bioremediation of mangroves impacted by petroleum
    • 10.1007/s11270-010-0536-4 1:CAS:528:DC%2BC3MXhvVChsbo%3D
    • HF Santos FL Carmo JE Paes AS Rosado RS Peixoto 2011 Bioremediation of mangroves impacted by petroleum Water, Air, and Soil Pollution 216 329 350 10.1007/s11270-010-0536-4 1:CAS:528:DC%2BC3MXhvVChsbo%3D
    • (2011) Water, Air, and Soil Pollution , vol.216 , pp. 329-350
    • Santos, H.F.1    Carmo, F.L.2    Paes, J.E.3    Rosado, A.S.4    Peixoto, R.S.5
  • 32
    • 77949277052 scopus 로고    scopus 로고
    • Microbial community response to a simulated hydrocarbon spill in mangrove sediments
    • 10.1007/s12275-009-0147-1
    • RG Taketani NO Franco AS Rosado JD van Elsas 2010 Microbial community response to a simulated hydrocarbon spill in mangrove sediments Journal of Microbiology 48 7 15 10.1007/s12275-009-0147-1
    • (2010) Journal of Microbiology , vol.48 , pp. 7-15
    • Taketani, R.G.1    Franco, N.O.2    Rosado, A.S.3    Van Elsas, J.D.4
  • 33
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • 10.1093/molbev/msr121 1:CAS:528:DC%2BC3MXht1eiu73K
    • K Tamura D Peterson N Peterson G Stecher M Nei S Kumar 2011 MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods Molecular Biology and Evolution 28 10 2731 2739 10.1093/molbev/msr121 1:CAS:528:DC%2BC3MXht1eiu73K
    • (2011) Molecular Biology and Evolution , vol.28 , Issue.10 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 35
    • 33947182125 scopus 로고    scopus 로고
    • Archaeal communities in mangrove soil characterized by 16S rRNA gene clones
    • B Yan K Hong ZN Yu 2006 Archaeal communities in mangrove soil characterized by 16S rRNA gene clones Journal of Microbiology 44 566 571 1:CAS:528:DC%2BD28Xht12isr7P (Pubitemid 46409817)
    • (2006) Journal of Microbiology , vol.44 , Issue.5 , pp. 566-571
    • Yan, B.1    Hong, K.2    Yu, Z.-N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.