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Volumn 3, Issue JAN, 2012, Pages

Abundance, diversity, and depth distribution of Planctomycetes in acidic northern wetlands

Author keywords

Acidic northern wetlands; Candidate division OP3; Depth distribution; FISH; Planctomycetes

Indexed keywords


EID: 84865408057     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2012.00005     Document Type: Article
Times cited : (52)

References (35)
  • 3
    • 0344172842 scopus 로고    scopus 로고
    • The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set
    • Daims, H., Brühl, A., Amann, R., Schleifer, K.H., and Wagner, M. (1999). The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst. Appl. Microbiol. 22, 434-444.
    • (1999) Syst. Appl. Microbiol. , vol.22 , pp. 434-444
    • Daims, H.1    Brühl, A.2    Amann, R.3    Schleifer, K.H.4    Wagner, M.5
  • 4
    • 0035489394 scopus 로고    scopus 로고
    • Detection and enumeration of methanotrophs in acidic Sphagnum peat by 16S rRNA fluorescence in situ hybridisation, including the use of newly developed oligonucleotide probes for Methylo-cella palustris
    • (2001) Appl Environ. Microbiol. , vol.67 , pp. 4850-4857
    • Dedysh, S.N.1    Derakshani, M.2    Liesack, W.3
  • 5
    • 33644942303 scopus 로고    scopus 로고
    • Phylogenetic analysis and in situ identification of bacteria community composition in an acidic Sphagnum peat bog
    • Dedysh, S. N., Pankratov, T. A., Belova, S. E., Kulichevskaya, I. S., and Liesack, W. (2006). Phylogenetic analysis and in situ identification of bacteria community composition in an acidic Sphagnum peat bog. Appl. Environ. Microbiol. 72, 2110-2117.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 2110-2117
    • Dedysh, S.N.1    Pankratov, T.A.2    Belova, S.E.3    Kulichevskaya, I.S.4    Liesack, W.5
  • 6
    • 0035146134 scopus 로고    scopus 로고
    • Novel bacterial lineages at the (sub) division level as detected by signature nucleotidetargeted recovery of 16S rRNA genes from bulk soil and rice roots of flooded rice microcosms
    • Derakshani, M., Lukow, T., and Liesack, W. (2001). Novel bacterial lineages at the (sub) division level as detected by signature nucleotide-targeted recovery of 16S rRNA genes from bulk soil and rice roots of flooded rice microcosms. Appl Environ. Microbiol. 67, 623-631.
    • (2001) Appl Environ. Microbiol. , vol.67 , pp. 623-631
    • Derakshani, M.1    Lukow, T.2    Liesack, W.3
  • 8
    • 0000122573 scopus 로고
    • PHYLIP-phylogeny inference package (version 3 2)
    • Felsenstein, J. (1989). PHYLIP-phylogeny inference package (version 3.2). Cladistics 5, 164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 9
    • 0029149054 scopus 로고
    • The Planctomycetes: emerging models for microbial ecology, evolution and cell biology
    • Fuerst, J. A. (1995). The Planctomycetes: emerging models for microbial ecology, evolution and cell biology. Microbiology 141,1493-1506.
    • (1995) Microbiology , vol.141 , pp. 1493-1506
    • Fuerst, J.A.1
  • 10
    • 79956136196 scopus 로고    scopus 로고
    • Beyond the bacterium: planctomycetes challenge our concepts of microbial structure and function
    • Fuerst, J. A., and Sagulenko, E. (2011). Beyond the bacterium: planctomycetes challenge our concepts of microbial structure and function. Nat. Rev. Microbiol. 9,403-413.
    • (2011) Nat. Rev. Microbiol. , vol.9 , pp. 403-413
    • Fuerst, J.A.1    Sagulenko, E.2
  • 11
    • 0001440603 scopus 로고
    • Isosphaera pallida, gen. nov., and comb. nov., a gliding, budding eubacterium from hot springs
    • Giovannoni, S. J., Schabtach, E., and Castenholz, R. W. (1987). Isosphaera pallida, gen. nov., and comb. nov., a gliding, budding eubacterium from hot springs. Arch. Microbiol. 147, 276-284.
    • (1987) Arch. Microbiol. , vol.147 , pp. 276-284
    • Giovannoni, S.J.1    Schabtach, E.2    Castenholz, R.W.3
  • 13
    • 79953751610 scopus 로고    scopus 로고
    • Aquatic microbial habitats within a neotropical rainforest: bromeliads and pH-associated trends in bacterial diversity and composition
    • Goffredi, S. K., Kantor, A. H., and Woodside, W. T. (2011). Aquatic microbial habitats within a neotropical rainforest: bromeliads and pH-associated trends in bacterial diversity and composition. Microb. Ecol. 61, 529-542.
    • (2011) Microb. Ecol. , vol.61 , pp. 529-542
    • Goffredi, S.K.1    Kantor, A.H.2    Woodside, W.T.3
  • 14
    • 5044240973 scopus 로고    scopus 로고
    • Bellerophon; a program to detect chimeric sequences in multiple sequence alignments
    • Huber, T., Faulkner, G., and Hugenholtz, P. (2004). Bellerophon; a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20, 2317-2319.
    • (2004) Bioinformatics , vol.20 , pp. 2317-2319
    • Huber, T.1    Faulkner, G.2    Hugenholtz, P.3
  • 15
    • 0031912606 scopus 로고    scopus 로고
    • Novel division level bacterial diversity in a Yellowstone hot spring
    • Hugenholtz, P., Pitulle, C., Hershberger, K. L., and Pace, N. R. (1998). Novel division level bacterial diversity in a Yellowstone hot spring. J. Bacteriol.180, 366-376.
    • (1998) J. Bacteriol. , vol.180 , pp. 366-376
    • Hugenholtz, P.1    Pitulle, C.2    Hershberger, K.L.3    Pace, N.R.4
  • 16
    • 33846937073 scopus 로고    scopus 로고
    • High abundance of Planctomycetes in anoxic layers of a Sphagnum peat bog
    • Ivanova, A. O., and Dedysh, S.N. (2006). High abundance of Planctomycetes in anoxic layers of a Sphagnum peat bog. Microbiology 75, 716-719.
    • (2006) Microbiology , vol.75 , pp. 716-719
    • Ivanova, A.O.1    Dedysh, S.N.2
  • 18
    • 84859007396 scopus 로고    scopus 로고
    • Order II. Candidatus Brocadiales ord. nov
    • eds N. R. Krieg, J. T. Staley, D. R. Brown, B. P. Hedlung, B. J. Paster, N. L. Ward, W. Ludwig, and W B. Whitman (New York, NY: Springer)
    • Jetten, M. S. M., Op den Camp, H., Kuenen, G. J., and Strous, M. (2010). Order II. Candidatus Brocadiales ord. nov., in Bergeys Manual of Systematic Bacteriology, Vol. 4, eds N. R. Krieg, J. T. Staley, D. R. Brown, B. P. Hedlung, B. J. Paster, N. L. Ward, W. Ludwig, and W B. Whitman (New York, NY: Springer), 918-925.
    • (2010) Bergeys Manual of Systematic Bacteriology , vol.4 , pp. 918-925
    • Jetten, M.S.M.1    Op den Camp, H.2    Kuenen, G.J.3    Strous, M.4
  • 21
    • 35348978262 scopus 로고    scopus 로고
    • Analysis of the bacterial community developing in the course of Sphagnum moss decomposition
    • Kulichevskaya, I. S., Belova, S. N., Kevbrin, V. V., Dedysh, S. N., and Zavarzin, G. A. (2007a). Analysis of the bacterial community developing in the course of Sphagnum moss decomposition. Microbiology 76,621-629.
    • (2007) Microbiology , vol.76 , pp. 621-629
    • Kulichevskaya, I.S.1    Belova, S.N.2    Kevbrin, V.V.3    Dedysh, S.N.4    Zavarzin, G.A.5
  • 25
    • 33747162190 scopus 로고    scopus 로고
    • Detection of representatives of the Planctomycetes in Sphagnum peat bogs by molecular and cultivation approaches
    • Kulichevskaya, I. S., Pankratov, T. A., and Dedysh, S. N. (2006). Detection of representatives of the Planctomycetes in Sphagnum peat bogs by molecular and cultivation approaches. Microbiology 75, 329-335.
    • (2006) Microbiology , vol.75 , pp. 329-335
    • Kulichevskaya, I.S.1    Pankratov, T.A.2    Dedysh, S.N.3
  • 27
    • 0035206494 scopus 로고    scopus 로고
    • Design and application of oligonucliotide probes for fluorescent in situ identification of the filamentous bacterial morphotype Nostocoida limicola in activated sludge
    • Liu, J.-R., and Seviour, R. J. (2001). Design and application of oligonucliotide probes for fluorescent in situ identification of the filamentous bacterial morphotype Nostocoida limicola in activated sludge. Environ. Microbiol. 3,551-560.
    • (2001) Environ. Microbiol. , vol.3 , pp. 551-560
    • Liu, J.R.1    Seviour, R.J.2
  • 29
    • 33748470974 scopus 로고    scopus 로고
    • Comparison of bacterial communities in New England Sphagnum bogs using terminal restriction fragment length polymorphism
    • Morales, S. E., Mouser, P. J., Ward, N., Hudman, S. P., Gotelli, N. J., Ross, D. S., and Lewis, T. A. (2006). Comparison of bacterial communities in New England Sphagnum bogs using terminal restriction fragment length polymorphism. Microb. Ecol. 52, 34-44.
    • (2006) Microb. Ecol. , vol.52 , pp. 34-44
    • Morales, S.E.1    Mouser, P.J.2    Ward, N.3    Hudman, S.P.4    Gotelli, N.J.5    Ross, D.S.6    Lewis, T.A.7
  • 30
    • 33745768376 scopus 로고    scopus 로고
    • Pirellula and OM43 are among the dominant lineages identified in an Oregon coast diatom bloom
    • Morris, R. M., Longnecker, K., and Giovannoni, S. J. (2006). Pirellula and OM43 are among the dominant lineages identified in an Oregon coast diatom bloom. Environ. Microbiol. 8, 1361-1370.
    • (2006) Environ. Microbiol. , vol.8 , pp. 1361-1370
    • Morris, R.M.1    Longnecker, K.2    Giovannoni, S.J.3
  • 31
    • 0032424081 scopus 로고    scopus 로고
    • Monitoring a widespread bacterial group: in situ detection of Planctomycetes with 16S rRNA-targeted probes
    • Neef, A., Amann, R., Schlesner, H., and Schleifer, K.H. (1998). Monitoring a widespread bacterial group: in situ detection of Planctomycetes with 16S rRNA-targeted probes. Microbiology 144, 3257-3266.
    • (1998) Microbiology , vol.144 , pp. 3257-3266
    • Neef, A.1    Amann, R.2    Schlesner, H.3    Schleifer, K.H.4
  • 33
    • 0001748999 scopus 로고
    • Assignment of the genera Planctomyces and Pirella to a new family Planctomycetaceae fam. nov. and description of the order Planctomycetales ord. nov
    • Schlesner, H., and Stackebrandt, E. (1986). Assignment of the genera Planctomyces and Pirella to a new family Planctomycetaceae fam. nov. and description of the order Planctomycetales ord. nov. Syst. Appl. Microbiol. 8, 174-176.
    • (1986) Syst. Appl. Microbiol , vol.8 , pp. 174-176
    • Schlesner, H.1    Stackebrandt, E.2
  • 34
    • 34547864862 scopus 로고    scopus 로고
    • The order Planctomycetales, including the genera Planctomyces, Pirellula, Gemmata and Isosphaera and the Candidatus genera Brocadia, Kuenenia and Scalindua
    • 3rd Edn, eds M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer, and E. Stackebrandt (New York: Springer)
    • Ward, N., Staley, J. T., Fuerst, J. A., Giovannoni, S., Schlesner, H., and Stackebrandt, E. (2006). The order Planctomycetales, including the genera Planctomyces, Pirellula, Gemmata and Isosphaera and the Candidatus genera Brocadia, Kuenenia and Scalindua, in The Prokaryotes: A Handbook on the Biology of Bacteria, 3rd Edn, Vol. 7, eds M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer, and E. Stackebrandt (New York: Springer), 757-793.
    • (2006) The Prokaryotes: A Handbook on the Biology of Bacteria , vol.7 , pp. 757-793
    • Ward, N.1    Staley, J.T.2    Fuerst, J.A.3    Giovannoni, S.4    Schlesner, H.5    Stackebrandt, E.6
  • 35
    • 0029859948 scopus 로고    scopus 로고
    • Characterization of universal small-subunit rRNA hybridization probes for quantitative molecular microbiological ecology studies
    • Zheng, D., Alm, E. W., Stahl, D. A., and Raskin, L. (1996). Characterization of universal small-subunit rRNA hybridization probes for quantitative molecular microbiological ecology studies. Appl Environ. Microbiol. 62,4504-4513.
    • (1996) Appl Environ. Microbiol. , vol.62 , pp. 4504-4513
    • Zheng, D.1    Alm, E.W.2    Stahl, D.A.3    Raskin, L.4


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