Genotypic and phenotypic characterization of isogenic doubled haploid exotic introgression lines in maize

Molecular Breeding

Volumn 30, Issue 2, 2012, Pages 1001-1016

  Brenner, Everton A ^a   Blanco, Mike ^a   Gardner, Candice ^a   Lübberstedt, Thomas ^a  

^a IOWA STATE UNIVERSITY   (United States)

Author keywords

Cell wall digestibility; Double haploids; Genotypic and phenotypic characterization; Germplasm Enhancement of maize

Indexed keywords

DNA SEQUENCES; PLANTS (BOTANY); QUALITY CONTROL;

CELL WALL DIGESTIBILITY; DOUBLE HAPLOIDS; DOUBLED HAPLOID; DOUBLED HAPLOID LINES; GENOTYPIC CHARACTERIZATION; GERMPLASM ENHANCEMENT OF MAIZE; GERMPLASMS; INTROGRESSION LINES; ISOGENIC; PHENOTYPIC CHARACTERIZATION;

GENES;

ZEA MAYS;

EID: 84865403874     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-011-9684-5     Document Type: Article

References (44)

1. Andersen JR, Zein I, Wenzel G, Krützfeldt B, Eder J, Ouzunova M, Lübberstedt T (2007) High levels of linkage disequilibrium and associations with forage quality at a phenylalanine ammonia-lyase locus in European maize (Zea mays L.) inbreds. Theor Appl Genet 114: 307-319.
2. Andersen JR, Zein I, Wenzel G, Darnhofer B, Eder J, Ouzunova M, Lübberstedt T (2008) Characterization of phenylpropanoid pathway genes within European maize (Zea mays L.) inbreds. BMC Plant Biol 8: 2.
3. Barrière Y, Argillier O (1998) In vivo silage feeding value of early maize hybrids registered in France between 1958 and 1994. Euphytica 99: 175-182.
4. Barrière Y, Emile JC, Traineau R, Surault F, Briand M, Gallais A (2004) Genetic variation for organic matter and cell wall digestibility in silage maize. Lessons from a 34-year long experiment with sheep in digestibility crates. Maydica 49: 115-126.
5. Barrière Y, Charcosset A, Denoue D, Madur D, Bauland C, Laborde J (2010) Genetic variation for lignin content and cell wall digestibility in early maize lines derived from ancient landraces. Maydica 55: 65-74.
6. Bradbury PJ, Zhang Z, Kroon DE, Casstevens TM, Ramdoss Y, Buckler ES (2007) TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics 23: 2633-2635.
7. Buckler ES, Holland JB, Bradbury PJ et al (2009) The genetic architecture of maize flowering time. Science 325: 714-718.
8. Buxton DR, Casler MD (1993) Environmental and genetic factors affecting cell wall composition and digestibility. In: Jung HG et al (eds) Forage cell wall structure and digestibility. American Society of Agronomy, Madison, pp 685-714.
9. Chang VG, Holtzapple MT (2000) Fundamental factors affecting biomass enzymatic reactivity. Appl Biochem Biotechnol 84-86: 1-37.
10. Chardon F, Virlon B, Moreau L, Falque M, Joets J, Decousset L, Murigneux A, Charcosset A (2004) Genetic architecture of flowering time in maize as inferred from quantitative trait loci meta-analysis and synteny conservation with the rice genome. Genetics 168: 2169-2185.
11. Chen Y, Zein I, Brenner EA, Andersen JR, Landbeck M, Ouzunova M, Lübberstedt T (2010) Polymorphisms in monolignol biosynthetic genes are associated with biomass yield and agronomic traits in European maize (Zea mays L.). BMC Plant Biol 10: 12.
12. Dietrich CR, Cui F, Packila ML, Li J, Ashlock DA, Nikolau BJ, Schnable PS (2002) Maize Mu transposons are targeted to the 5′ untranslated region of the gl8 gene and sequences flanking Mu target-site duplications exhibit nonrandom nucleotide composition throughout the genome. Genetics 160: 697-716.
13. Eder J, Chalyk S (2002) In vivo haploid induction in maize. Theor Appl Genet 104: 703-708.
14. Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
15. Fehr W (1993) Principles of cultivar development: theory and technique, vol 1. Macmillan, New York.
16. Frisch M, Melchinger AE (2007) Variance of the parental genome contribution to inbred lines derived from biparental crosses. Genetics 176: 477-488.
17. Geiger HH (2009) Doubled haploids. In: Bennetzen J, Hake S (eds) Handbook of maize-genetics and genomics. Springer, New York, pp 641-657.
18. Gray KA, Zhao L, Emptage M (2006) Bioethanol. Curr Opin Chem Biol 10: 141-146.
19. Guillet-Claude C, Birolleau-Touchard C, Manicacci D, Fourmann M, Barraud S, Carret V, Martinant JP, Barrière Y (2004) Genetic diversity associated with variation in silage corn digestibility for three O-methyltransferase genes involved in lignin biosynthesis. Theor Appl Genet 110: 126-135.
20. Hahn-Hägerdal B, Galbe M, Gorwa-Grauslund MF, Lidén G, Zacchi G (2006) Bio-ethanol: the fuel of tomorrow from the residues of today. Trends Biotechnol 24: 549-556.
21. Hoskinson RL, Karlen DL, Stuart JB et al (2007) Engineering, nutrient removal, and feedstock conversion evaluations of four corn stover harvest scenarios. Biomass Bioenergy 31: 126-136.
22. Houghton J, Weatherwax S, Ferrell J (2006) Breaking the biological barriers to cellulosic ethanol: a joint research agenda. US Dept. Energy, Rockville, MD, 7-9 Dec 2005.
23. Isci A, Murphy PT, Anex RP, Moore KJ (2008) A rapid simultaneous saccharification and fermentation (SSF) technique to determine ethanol yields. Bioenergy Res 1: 163-169.
24. Lauer JG, Coors JG, Flannery PJ (2001) Forage yield and quality of corn cultivars developed in different eras. Crop Sci 41: 1449-1455.
25. Lee S, Kasif S, Weng Z, Cantor CR (2008) Quantitative analysis of single nucleotide polymorphisms within copy number variation. PLoS One 3: 12.
26. Li L, Xu X, Jin W, Chen S (2009) Morphological and molecular evidences for DNA introgression in haploid induction via a high oil inducer CAUHOI in maize. Planta 230: 367-376.
27. Lin Y, Tanaka S (2006) Ethanol fermentation from biomass resources: current state and prospects. Appl Microbiol Biotechnol 69: 627-642.
28. Lorenz AJ, Anex RP, Isci A, Coors JG, de Leon N, Weimer PJ (2009a) Forage quality and composition measurements as predictors of ethanol yield from maize (Zea mays L.) stover. Biotechnol Biofuels 2: 5.
29. Lorenz AJ, Coors JG, de Leon N, Wolfrum EJ, Hames BR, Sluiter AD, Weimer PJ (2009b) Characterization, genetic variation, and combining ability of maize traits relevant to the production of cellulosic ethanol. Crop Sci 49: 85-98.
30. McMullen MD, Kresovich S, Villeda HS et al (2009) Genetic properties of the maize nested association mapping population. Science 325: 737-740.
31. Murigneux A, Barloy D, Leroy P, Beckert M (1993) Molecular and morphological evaluation of doubled haploid lines in maize. I. Homogeneity within DH lines. Theor Appl Genet 86: 837-842.
32. Perlack RD, Wright LL, Turhollow AF, Graham RL, Strokes BJ, Erbach DC (2005) Biomass as feedstock for a bioenergy and bioproducts industry: the technical feasibility of a billion-ton annual supply. USDA-DOE. ORNL/TM-2006/66.
33. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
34. Rober FK, Gordillo GA, Geiger HH (2005) In vivo haploid induction in maize: performance of newinducers and significance of doubled haploid lines in hybrid breeding. Maydica 50: 275-283.
35. Salvi S, Castelletti S, Tuberosa R (2009) An updated consensus map for flowering time QTLs in maize. Maydica 54: 501-512.
36. Salvi S, Corneti S, Bellotti M, Carraro N, Sanguineti MC, Castelletti S, Tuberosa R (2011) Genetic dissection of maize phenology using an intraspecific introgression library. BMC Plant Biol 11: 4.
37. Tarter JA, Goodman MM, Holland JB (2004) Recovery of exotic alleles in semiexotic maize inbreds derived from crosses between Latin American accessions and a temperate line. Theor Appl Genet 109: 609-617.
38. Tavaud-Pirra M, Sartre P, Nelson R, Santoni S, Texier N, Roumet P (2009) Genetic diversity in a soybean collection. Crop Sci 49: 895-902.
39. Truntzler M, Barrière Y, Sawkins MC, Lespinasse D, Betran J, Charcosset A, Moreau L (2010) Meta-analysis of QTL involved in silage quality of maize and comparison with the position of candidate genes. Theor Appl Genet 121: 1465-1482.
40. Tuberosa R, Salvi S (2007) From QTLs to genes controlling root traits in maize. In: Spiertz JHJ, Struik PC, van Laar HH (eds) Scale and complexity in plant systems research: gene-plant-crop relations. Springer, The Netherlands, pp 13-22.
41. van Bogaert G (1977) Scope for improving the yield of grasses and legumes by breeding and selection. In: Proceedings of the international meeting on animal production from temperate grasslands. Animal Production Association, Agricultural Institute, Belclare Tuam Co Galway, Ireland, pp 29-35.
42. Vogel KP, Sleper DA (1994) Alteration of plants via genetics and plant breeding. In: Fahey GC, Collins M, Mertens DR, Moser LE (eds) Forage quality, evaluation, and utilization. American Society Agron, Madison, pp 891-921.
43. Weimer PJ, Dien BS, Springer TL, Vogel KP (2005) In vitro gas production as a surrogate measure of the fermentability of cellulosic biomass to ethanol. Appl Microbiol Biotechnol 67: 52-58.
44. Yan J, Shah T, Warburton ML, Buckler ES, McMullen MD, Crouch J (2009) Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers. PLoS One 4: 12.