Portable bacterial identification system based on elastic light scatter patterns

Journal of Biological Engineering

Volumn 6, Issue , 2012, Pages

  Bae, Euiwon ^a   Ying, Dawei ^a   Kramer, Donald ^b   Patsekin, Valery ^b   Rajwa, Bartek ^b   Holdman, Cheryl ^b   Sturgis, Jennifer ^b   Davisson, V J ^c   Robinson, J P ^b,d  

^a PURDUE UNIVERSITY   (United States)

^b PURDUE UNIVERSITY   (United States)

^c PURDUE UNIVERSITY   (United States)

^d PURDUE UNIVERSITY   (United States)

Author keywords

Automation; Colony count; Forward scattering; Portable bacterial identification

Indexed keywords

ALGORITHM; ARTICLE; BACTERIUM COLONY; BACTERIUM IDENTIFICATION; CAMERA; CLASSIFICATION; COMPUTER PROGRAM; ELASTIC LIGHT SCATTER; FORWARD SCATTEROMETRY; HEALTH CARE COST; LIGHT SCATTERING; PRIORITY JOURNAL;

BACTERIA (MICROORGANISMS);

EID: 84865336726     PISSN: None     EISSN: 17541611     Source Type: Journal    
DOI: 10.1186/1754-1611-6-12     Document Type: Article

References (29)

1. Kawasaki K, Mochizuki A, Matsushita M, Umeda T, Shigesada N. Modeling spatio-temporal patterns generated by Bacillus subtilis. J Theor Biol 1997, 188:177-185. 10.1006/jtbi.1997.0462, 9379672.
2. Lacasta AM, Cantalapiedra IR, Auguet CE, Penaranda A, Ramirez-Piscina L. Modeling of spatiotemporal patterns in bacterial colonies. Phys Rev E 1999, 59:7036-7041.
3. Mimura M, Sakaguchi H, Matsushita M. Reaction-diffusion modelling of bacterial colony patterns. Physica A 2000, 282:283-303.
4. Barber PR, Vojnovic B, Kelly J, Mayes CR, Boulton P, Woodcock M, Joiner MC. Automated counting of mammalian cell colonies. Phys Med Biol 2001, 46:63-76. 10.1088/0031-9155/46/1/305, 11197679.
5. Bernard R, Kanduser M, Pernus F. Model-based automated detection of mammalian cell colonies. Phys Med Biol 2001, 46:3061-3072. 10.1088/0031-9155/46/11/320, 11720364.
6. Corkidi G, Diaz-Uribe R, Folch-Mallol JL, Nieto-Sotelo J. COVASIAM: an image analysis method that allows detection of confluent microbial colonies and colonies of various sizes for automated counting. Appl Environ Microbiol 1998, 64:1400-1404. 106161, 9546177.
7. Marotz J, Lubbert C, Eisenbeiss W. Effective object recognition for automated counting of colonies in Petri dishes (automated colony counting). Comput Meth Prog Bio 2001, 66:183-198.
8. Mukherjee DP, Pal A, Sarma SE, Majumder DD. Bacterial colony counting using distance transform. Int J Biomed Comput 1995, 38:131-140. 10.1016/0020-7101(94)01043-Z, 7729929.
9. Liu X, Wang S, Sendi L, Caulfield MJ. High-throughput imaging of bacterial colonies grown on filter plates with application to serum bactericidal assays. J Immunol Methods 2004, 292:187-193. 10.1016/j.jim.2004.06.021, 15350523.
10. Putman M, Burton R, Nahm MH. Simplified method to automatically count bacterial colony forming unit. J Immunol Methods 2005, 302:99-102. 10.1016/j.jim.2005.05.003, 16002082.
11. Clarke ML, Burton RL, Hill AN, Litorja M, Nahm MH, Hwang J. Low-Cost, high-throughput, automated counting of bacterial colonies. Cytom Part A 2010, 77A:790-797.
12. Chen W-B, Zhang C. An automated bacterial colony counting and classification system. Inform Syst Front 2009, 11:349-368.
13. Guo S. Optical scattering for bacterial colony detection and characterization 2004, Purdue University: Masters degree.
14. Banada PP, Guo SL, Bayraktar B, Bae E, Rajwa B, Robinson JP, Hirleman ED, Bhunia AK. Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species. Biosens Bioelectron 2007, 22:1664-1671. 10.1016/j.bios.2006.07.028, 16949268.
15. Bae E, Bai N, Aroonnual A, Bhunia AK, Hirleman ED. Label-free identification of bacterial microcolonies via elastic scattering. Biotechnol Bioeng 2011, 108:637-644. 10.1002/bit.22980, 21246511.
16. Bae E, Bai N, Aroonnual A, Robinson JP, Bhunia AK, Hirleman ED. Modeling light propagation through bacterial colonies and its correlation with forward scattering patterns. J Biomed Opt 2010, 15:019004.
17. Bae E, Banada PP, Huff K, Bhunia AK, Robinson JP, Hirleman ED. Biophysical modeling of forward scattering from bacterial colonies using scalar diffraction theory. Appl Opt 2007, 46:3639-3648. 10.1364/AO.46.003639, 17514326.
18. Bae E, Aroonnual A, Bhunia AK, Robinson JP, Hirleman ED. System automation for a bacterial colony detection and identification instrument via forward scattering. Meas Sci Technol 2009, 20:015082.
19. Robinson JP, Rajwa BP, Dundar MM, Bae E, Patsekin V, Hirleman ED, Roumani A, Bhunia AK, Dietz JE, Davisson VJ, Thomas JG. A distributed national network for label-free rapid identification of emerging pathogens. Chemical, Biological, Radiological, Nuclear, and Explosives (CBRNE) Sensing XII. Volume 8018. 1 edition 2011, 80180C-80186C. Orlando: SPIE, Fountain Iii AW, Gardner PJ, Proceedings of SPIE.
20. Ballard DH. Generalizing the hough transform to detect arbitrary shapes. Pattern Recognition 1981, 13:111-122.
21. Hough PVC. A method and means for recognizing complex patterns 1962, USA: US3069654.
22. Leavers VF. Which Hough transform?. CVGIP: Image Understanding 1993, 58:250-264.
23. Mancas M, Gosselin B, Macq B. Segmentation using a region growing thresholding. Image Processing: Algorithms and Systems IV. Volume 5672 2005, 388-398. Proceedings of the Society of Photo-Optical Instrumentation Engineers (SPIE)], EK O.
24. Pham DL, Xu CY, Prince JL. Current methods in medical image segmentation. Annu Rev Biomed Eng 2000, 2:315-337. 10.1146/annurev.bioeng.2.1.315, 11701515.
25. Proffitt D, Rosen D. Metrication erros and coding efficiency of chain-encoding schemes for the representation of lines and edges. Comput Vision Graph 1979, 10:318-332.
26. Freeman H. On the encoding of arbitrary geometric configurations. Electronic Computers, IRE Transactions on 1961, EC-10:260-268.
27. Banada PP, Huff K, Bae E, Rajwa B, Aroonnual A, Bayraktar B, Adil A, Robinson JP, Hirleman ED, Bhunia AK. Label-free detection of multiple bacterial pathogens using light-scattering sensor. Biosens Bioelectron 2009, 24:1685-1692. 10.1016/j.bios.2008.08.053, 18945607.
28. Bayraktar B, Banada PP, Hirleman ED, Bhunia AK, Robinson JP, Rajwa B. Feature extraction from light-scatter patterns of Listeria colonies for identification and classification. J Biomed Opt 2006, 11:34006. 10.1117/1.2203987, 16822056.
29. Rajwa B, Dundar MM, Akova F, Bettasso A, Patsekin V, Hirleman ED, Bhunia AK, Robinson JP. Discovering the unknown: detection of emerging pathogens using a label-free light-scattering system. Cytom Part A 2010, 77A:1103-1112.