Genetic variation in histidine rich proteins among Indian Plasmodium falciparum population: Possible cause of variable sensitivity of malaria rapid diagnostic tests

Malaria Journal

Volumn 11, Issue , 2012, Pages

  Kumar, Navin ^a   Singh, Jai P N ^a   Pande, Veena ^b   Mishra, Neelima ^a   Srivastava, Bina ^a   Kapoor, Ridhima ^a   Valecha, Neena ^a   Anvikar, Anupkumar R ^a  

^a NATIONAL INSTITUTE OF MALARIA RESEARCH   (India)

^b KUMAUN UNIVERSITY   (India)

Author keywords

Genetic polymorphism; India; Plasmodium falciparum Histidine rich protein 2; Plasmodium falciparum Histidine rich protein 3; Rapid Diagnostic Tests

Indexed keywords

AMINO ACID; HISTIDINE; PLASMODIUM FALCIPARUM SPECIFIC HISTIDINE RICH PROTEIN 2; PLASMODIUM FALCIPARUM SPECIFIC HISTIDINE RICH PROTEIN 3; PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; DIAGNOSTIC TEST; GENE; GENE SEQUENCE; GENE TARGETING; GENETIC CODE; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GEOGRAPHY; INDIAN; LIMIT OF DETECTION; MALARIA; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMODIUM FALCIPARUM; PLASMODIUM FALCIPARUM SPECIFIC HISTIDINE RICH PROTEIN 2 GENE; PLASMODIUM FALCIPARUM SPECIFIC HISTIDINE RICH PROTEIN 3 GENE; SENSITIVITY ANALYSIS; STATISTICAL SIGNIFICANCE;

ANTIGENS, PROTOZOAN; CLINICAL LABORATORY TECHNIQUES; DIAGNOSTIC TESTS, ROUTINE; DNA, PROTOZOAN; GENETIC VARIATION; HUMANS; INDIA; MALARIA, FALCIPARUM; MOLECULAR SEQUENCE DATA; PLASMODIUM FALCIPARUM; PROTEINS; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, DNA;

EID: 84865330014     PISSN: None     EISSN: 14752875     Source Type: Journal    
DOI: 10.1186/1475-2875-11-298     Document Type: Article

References (22)

1. National Vector Borne Diseases Control Programme India www.nvbdcp.org accessed on 7th May 2012
2. WHO RDT testing round 3 http://www.who.int/tdr/publications/documents/ rdt3.pdf
3. Homologous genes encode two distinct histidine- rich proteins in a cloned isolate of Plasmodium falciparum. Wellems TE, Howard RJ, Proc Natl Acad Sci USA 1986 83 6065 6069 10.1073/pnas.83.16.6065 3016741 (Pubitemid 16000654)
4. Comparative analysis of the Plasmodium falciparum histidine-rich proteins HRP-I, HRP-II and HRPIII in malaria parasites of diverse origin. Rock EP, Marsh K, Saul AJ, Wellems TE, Taylor DW, Maloy WL, Howard RJ, Parasitology 1987 95 209 227 10.1017/S0031182000057681 3320887 (Pubitemid 17144874)
5. Cloning and sequence analysis of histidine-rich protein-II gene fragment of Plasmodium falciparum Yunnan strain (Chinese)] Zhongguo Ji Sheng Chong Xue Yu Ji Sheng. Xiao J, Li M, Bi H, Wang P, Li Y, Chong Bing Za Zhi 1999 17 143 145
6. Genetic diversity of Plasmodium falciparum histidine- rich protein 2 (PfHRP2) and its effect on the performance of PfHRP2-based rapid diagnostic tests. Baker J, McCarthy J, Gatton M, Kyle DE, Belizario V, Luchavez J, Bell D, Cheng Q, J Infect Dis 2005 192 870 877 10.1086/432010 16088837 (Pubitemid 41193085)
7. Country-wide assessment of the genetic polymorphism in Plasmodium falciparum and Plasmodium vivax antigens detected with rapid diagnostic tests for malaria. Mariette N, Barnadas C, Bouchier C, Tichit M, Ménard T, Malar J 2008 7 219 10.1186/1475-2875-7-219 18957099
8. Global sequence variation in the histidine-rich proteins 2 and 3 of Plasmodium falciparum: implications for the performance of malaria rapid diagnostic tests. Baker J, Ho MF, Pelecanos A, Gatton M, Chen N, Abdullah S, Albertini A, Ariey F, Barnwell J, Bell D, Cunningham J, Djalle D, Echeverry DF, Gamboa D, Hii J, Kyaw MP, Luchavez J, Membi C, Menard D, Murillo C, Nhem S, Ogutu B, Onyor P, Oyibo W, Wang SQ, McCarthy J, Cheng Q, Malar J 2010 9 129 10.1186/1475-2875-9-129 20470441
9. High sensitivity of detection of human malaria parasites by the use of nested polymerase chain reaction. Snounou G, Viriyakosol S, Zhu XP, Jarra W, Pinheiro L, do Rosario VE, Thaithong S, Brown KN, Mol Biochem Parasitol 1993 61 315 320 10.1016/0166-6851(93)90077-B 8264734
10. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Hall T, Nucl Acids Symp Ser 1999 41 95 98
11. Effect of sequence variation in Plasmodium falciparum histidine- rich protein 2 on binding of specific monoclonal antibodies: Implications for rapid diagnostic tests for malaria. Lee N, Baker J, Andrews KT, Gatton ML, Bell D, Cheng Q, McCarthy J, J Clin Microbiol 2006 44 2773 2778 10.1128/JCM.02557-05 16891491 (Pubitemid 44228570)
12. Evaluation of the intra- and inter-specific genetic variability of Plasmodium lactate dehydrogenase. Talman A, Duval L, Legrand E, Hubert V, Yen S, Bell D, Le Bras J, Ariey F, Houze S, Malar J 2007 6 140 10.1186/1475-2875-6-140 17961215
13. Assessing the genetic diversity of the aldolase genes of Plasmodium falciparum and Plasmodium vivax and its potential effect on performance of aldolase-detecting rapid diagnostic tests. Lee N, Baker J, Bell D, McCarthy J, Cheng Q, J Clin Microbiol 2006 44 4547 4549 10.1128/JCM.01611-06 17021060 (Pubitemid 44937092)
14. Chromosome size variation occurs in cloned Plasmodium falciparum on in vitro cultivation. Wellems TE, Oduola AMJ, Phenton B, Des Jardins R, Panton LJ, do Rosario V, Braz J Genet 1988 11 813 825
15. A genetic map and recombination parameters of the human malaria parasite Plasmodium falciparum. Su X, Ferdig MT, Huang Y, Huynh CQ, Liu A, You J, Wootton JC, Wellems TE, Science 1999 286 1351 1353 10.1126/science.286.5443.1351 10558988 (Pubitemid 29535893)
16. A large proportion of P. falciparum isolates in the Amazon region of Peru lack Pfhrp2 and Pfhrp3: implications for malaria rapid diagnostic tests. Gamboa D, Ho M-F, Bendezu J, Torres K, Chiodini PL, Barnwell JW, Incardona S, Perkins M, Bell D, McCarthy J, Cheng Q, PLoS One 2010 5 8091 10.1371/journal.pone. 0008091 20111602
17. Combined deletions of Pfhrp2 and Pfhrp3 genes result in Plasmodium falciparum malaria false-negative rapid diagnostic test. Houzé S, Hubert V, Pessec GL, Bras JL, Clain J, J Clin Microbiol 2011 49 2694 2696 10.1128/JCM.00281-11 00281-11 21543573
18. Recombinant antibodies specific for the Plasmodium falciparum histidine-rich protein 2. Ravaoarisoa E, Zamanka H, Fusai T, Bellalou J, Bedouelle H, Puijalon M, Fandeur T, MAbs 2010 2 416 427
19. Sequence of a cDNA encoding a small polymorphic histidine- and alanine-rich protein from Plasmodium falciparum. Stahl HD, Kemp DJ, Crewther PE, Scanlon DB, Woodrow G, Brown GV, Bianco AE, Anders RF, Coppel RL, Nucleic Acids Res 2002 30 726 731 10.1093/nar/30.3.726 11809885
20. Purification and partial characterization of an unusual protein of Plasmodium falciparum: histidine-rich protein II. Panton LJ, McPhie P, Maloy WL, Wellems TE, Taylor DW, Howard RJ, Mol Biochem Parasitol 1989 35 149 160 10.1016/0166-6851(89)90117-5 2671720 (Pubitemid 19157024)
21. Secretion of a malarial histidine rich protein (Pf HRP II) from Plasmodium falciparum-infected erythrocytes. Howard RJ, Uni S, Aikawa M, Aley SB, Leech JH, Lew AM, Wellems TE, Rener J, Taylor DW, J Cell Biol 1986 103 1269 1277 10.1083/jcb.103.4.1269 3533951 (Pubitemid 17174153)
22. Identification of Plasmodium falciparum histidine-rich protein 2 in the plasma of humans with malaria. Parra ME, Evans CB, Taylor DW, J Clin Microbiol 1991 29 1629 1634 1761684