메뉴 건너뛰기




Volumn 24, Issue 5, 2012, Pages 945-953

Development and performance evaluation of calf diarrhea pathogen nucleic acid purification and detection workflow

Author keywords

Coronavirus; Cryptosporidium spp.; reverse transcription quantitative polymerase chain reaction; rotavirus

Indexed keywords

NUCLEIC ACID;

EID: 84865236804     PISSN: 10406387     EISSN: 19434936     Source Type: Journal    
DOI: 10.1177/1040638712456976     Document Type: Article
Times cited : (38)

References (28)
  • 1
    • 33845620296 scopus 로고    scopus 로고
    • Frequency of group A rotavirus in diarrhoeic calves in Brazilian cattle herds, 1998-2002
    • Alfieri AA,Parazzi ME,Takiuchi E, et al.Frequency of group A rotavirus in diarrhoeic calves in Brazilian cattle herds, 1998-2002.Trop Anim Health Prod. 2006;38:521-526.
    • (2006) Trop Anim Health Prod , vol.38 , pp. 521-526
    • Alfieri, A.A.1    Parazzi, M.E.2    Takiuchi, E.3
  • 2
    • 77957017988 scopus 로고    scopus 로고
    • Multiplex semi-nested RT-PCR with exogenous internal control for simultaneous detection of bovine coronavirus and group A rotavirus
    • Asano KM,de Souza SP,de Barros IN, et al.Multiplex semi-nested RT-PCR with exogenous internal control for simultaneous detection of bovine coronavirus and group A rotavirus.J Virol Methods. 2010;169:375-379.
    • (2010) J Virol Methods , vol.169 , pp. 375-379
    • Asano, K.M.1    de Souza, S.P.2    de Barros, I.N.3
  • 3
    • 53049093282 scopus 로고    scopus 로고
    • Molecular and immunohistochemical detection of assemblage E, Giardia duodenalis in scouring North Dakota calves
    • Barigye R,Dyer NW,Newell TK, et al.Molecular and immunohistochemical detection of assemblage E, Giardia duodenalis in scouring North Dakota calves.Vet Parasitol. 2008;157:196-202.
    • (2008) Vet Parasitol , vol.157 , pp. 196-202
    • Barigye, R.1    Dyer, N.W.2    Newell, T.K.3
  • 6
    • 1842628941 scopus 로고    scopus 로고
    • Cryptosporidium parvum and Giardia intestinalis in calf diarrhoea in Sweden
    • Björkman C,Svensson C,Christensson B,de Verdier K.Cryptosporidium parvum and Giardia intestinalis in calf diarrhoea in Sweden.Acta Vet Scand. 2003;44:145-152.
    • (2003) Acta Vet Scand , vol.44 , pp. 145-152
    • Björkman, C.1    Svensson, C.2    Christensson, B.3    de Verdier, K.4
  • 8
    • 41549160277 scopus 로고    scopus 로고
    • Modelling the limit of detection in real-time quantitative PCR
    • Burns M,Valdivia H.Modelling the limit of detection in real-time quantitative PCR.Eur Food Res Technol. 2008;226:1513-1524.
    • (2008) Eur Food Res Technol , vol.226 , pp. 1513-1524
    • Burns, M.1    Valdivia, H.2
  • 9
    • 77954909034 scopus 로고    scopus 로고
    • Development of a panel multiplex real-time polymerase chain reaction assays for simultaneous detection of major agents causing calf diarrhea in feces
    • Cho YI,Kim WI,Liu S, et al.Development of a panel multiplex real-time polymerase chain reaction assays for simultaneous detection of major agents causing calf diarrhea in feces.J Vet Diagn Invest. 2010;22:509-517.
    • (2010) J Vet Diagn Invest , vol.22 , pp. 509-517
    • Cho, Y.I.1    Kim, W.I.2    Liu, S.3
  • 10
    • 0032890386 scopus 로고    scopus 로고
    • Cryptosporidium and concurrent infections with other major enteropathogens in 1 to 30-day-old diarrheic dairy calves in central Spain
    • de la Fuente R,Luzón M,Ruiz-Santa-Quiteria JA, et al.Cryptosporidium and concurrent infections with other major enteropathogens in 1 to 30-day-old diarrheic dairy calves in central Spain.Vet Parasitol. 1999;80:179-185.
    • (1999) Vet Parasitol , vol.80 , pp. 179-185
    • de la Fuente, R.1    Luzón, M.2    Ruiz-Santa-Quiteria, J.A.3
  • 11
    • 53549133345 scopus 로고    scopus 로고
    • Cryptosporidium infection in calves from a rural area of Buenos Aires, Argentina
    • Del Coco VF,Córdoba MA,Basualdo JA.Cryptosporidium infection in calves from a rural area of Buenos Aires, Argentina.Vet Parasitol. 2008;158:31-35.
    • (2008) Vet Parasitol , vol.158 , pp. 31-35
    • Del Coco, V.F.1    Córdoba, M.A.2    Basualdo, J.A.3
  • 12
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: a multiple sequence alignment method with reduced time and space complexity
    • Edgar RC.MUSCLE: a multiple sequence alignment method with reduced time and space complexity.BMC Bioinformatics. 2004;5:113.
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.C.1
  • 13
    • 34548407520 scopus 로고    scopus 로고
    • Rotaviruses
    • ed. KnipeDMHowleyPMGriffinDE., 5th ed., Lippincott, Williams and Wilkins, Philadelphia, PA.Knipe DMHowley PMGriffin DE, ed., Philadelphia, PA: Lippincott, Williams and Wilkins
    • Estes MK,Kapikian AZFields's virology. 2007, Rotaviruses. In: Fields's virology, ed. KnipeDMHowleyPMGriffinDE., 5th ed., pp. 1917-1974. Lippincott, Williams and Wilkins, Philadelphia, PA.Knipe DMHowley PMGriffin DE, ed. Philadelphia, PA: Lippincott, Williams and Wilkins; 2007:1917-1974.
    • (2007) Fields's Virology , pp. 1917-1974
    • Estes, M.K.1    Kapikian, A.Z.2
  • 15
    • 33750982151 scopus 로고    scopus 로고
    • Molecular characterization of bovine rotavirus circulating in beef and dairy herds in Argentina during a 10-year period (1994-2003)
    • Garaicoechea L,Bok K,Jones LR, et al.Molecular characterization of bovine rotavirus circulating in beef and dairy herds in Argentina during a 10-year period (1994-2003).Vet Microbiol. 2006;118:1-11.
    • (2006) Vet Microbiol , vol.118 , pp. 1-11
    • Garaicoechea, L.1    Bok, K.2    Jones, L.R.3
  • 16
    • 0034069132 scopus 로고    scopus 로고
    • Rotavirus and concurrent infections with other enteropathogens in neonatal diarrheic dairy calves in Spain
    • García A,Ruiz-Santa-Quiteria JA,Orden JA, et al.Rotavirus and concurrent infections with other enteropathogens in neonatal diarrheic dairy calves in Spain.Comp Immunol Microbiol Infect Dis. 2000;23:175-183.
    • (2000) Comp Immunol Microbiol Infect Dis , vol.23 , pp. 175-183
    • García, A.1    Ruiz-Santa-Quiteria, J.A.2    Orden, J.A.3
  • 17
    • 0026816150 scopus 로고
    • Prevalence of bovine group A rotavirus shedding among dairy calves in Ohio
    • Lucchelli A,Lance SE,Bartlett PB, et al.Prevalence of bovine group A rotavirus shedding among dairy calves in Ohio.Am J Vet Res. 1992;53:169-174.
    • (1992) Am J Vet Res , vol.53 , pp. 169-174
    • Lucchelli, A.1    Lance, S.E.2    Bartlett, P.B.3
  • 18
    • 0034657301 scopus 로고    scopus 로고
    • A spreadsheet for the calculation of comprehensive statistics for the assessment of diagnostic tests and inter-rater agreement
    • Mackinnon A.A spreadsheet for the calculation of comprehensive statistics for the assessment of diagnostic tests and inter-rater agreement.Comput Biol Med. 2000;30:127-134.
    • (2000) Comput Biol Med , vol.30 , pp. 127-134
    • Mackinnon, A.1
  • 19
    • 34548435686 scopus 로고    scopus 로고
    • Detection and molecular characterization of calf diarrhoea bovine coronaviruses circulating in South Korea during 2004-2005
    • Park SJ,Lim GK,Park SI, et al.Detection and molecular characterization of calf diarrhoea bovine coronaviruses circulating in South Korea during 2004-2005.Zoonoses Public Health. 2007;54:223-230.
    • (2007) Zoonoses Public Health , vol.54 , pp. 223-230
    • Park, S.J.1    Lim, G.K.2    Park, S.I.3
  • 20
    • 0037074612 scopus 로고    scopus 로고
    • TAGS, a program for the evaluation of test accuracy in the absence of a gold standard
    • Pouillot R,Gerbier G,Gardner IA."TAGS", a program for the evaluation of test accuracy in the absence of a gold standard.Prev Vet Med. 2002;53:67-81.
    • (2002) Prev Vet Med , vol.53 , pp. 67-81
    • Pouillot, R.1    Gerbier, G.2    Gardner, I.A.3
  • 21
    • 48749114953 scopus 로고    scopus 로고
    • Viral detection by electron microscopy: past, present and future
    • Roingeard P.Viral detection by electron microscopy: past, present and future.Biol Cell. 2008;100:491-501.
    • (2008) Biol Cell , vol.100 , pp. 491-501
    • Roingeard, P.1
  • 22
    • 0035012435 scopus 로고    scopus 로고
    • Replicate PCR testing and probit analysis for detection and quantitation of Chlamydia pneumonia in clinical specimens
    • Smieja M,Mahony JB,Goldsmith CH, et al.Replicate PCR testing and probit analysis for detection and quantitation of Chlamydia pneumonia in clinical specimens.J Clin Microbiol. 2001;39:1796-1801.
    • (2001) J Clin Microbiol , vol.39 , pp. 1796-1801
    • Smieja, M.1    Mahony, J.B.2    Goldsmith, C.H.3
  • 23
    • 70350284628 scopus 로고    scopus 로고
    • Frequency of BCoV detection by a semi-nested PCR assay in faeces of calves from Brazilian cattle herds
    • Stipp DT,Barry AF,Alfieri AF, et al.Frequency of BCoV detection by a semi-nested PCR assay in faeces of calves from Brazilian cattle herds.Trop Anim Health Prod. 2009;41:1563-1567.
    • (2009) Trop Anim Health Prod , vol.41 , pp. 1563-1567
    • Stipp, D.T.1    Barry, A.F.2    Alfieri, A.F.3
  • 24
    • 33748562180 scopus 로고    scopus 로고
    • Real-time PCR detection and speciation of Cryptosporidium infection using Scorpion probes
    • Stroup SE,Roy S,Michele J, et al.Real-time PCR detection and speciation of Cryptosporidium infection using Scorpion probes.J Med Microbiol. 2006;55:1217-1222.
    • (2006) J Med Microbiol , vol.55 , pp. 1217-1222
    • Stroup, S.E.1    Roy, S.2    Michele, J.3
  • 25
    • 53149115261 scopus 로고    scopus 로고
    • Prevalence of four enteropathogens in the faeces of young diarrhoeic dairy calves in Switzerland
    • Uhde FL,Kaufmann T,Sager H, et al.Prevalence of four enteropathogens in the faeces of young diarrhoeic dairy calves in Switzerland.Vet Rec. 2008;163:362-366.
    • (2008) Vet Rec , vol.163 , pp. 362-366
    • Uhde, F.L.1    Kaufmann, T.2    Sager, H.3
  • 26
    • 0027138653 scopus 로고
    • Concurrent infections of Giardia and Cryptosporidium on two Ohio farms with calf diarrhea
    • Xiao L,Herd RP,Rings DM.Concurrent infections of Giardia and Cryptosporidium on two Ohio farms with calf diarrhea.Vet Parasitol. 1993;51:41-48.
    • (1993) Vet Parasitol , vol.51 , pp. 41-48
    • Xiao, L.1    Herd, R.P.2    Rings, D.M.3
  • 27
    • 70350257958 scopus 로고    scopus 로고
    • Molecular screening and risk factors of enterotoxigenic Escherichia coli and Salmonella spp. in diarrheic neonatal calves in Egypt
    • Younis EE,Ahmed AM,El-Khodery SA, et al.Molecular screening and risk factors of enterotoxigenic Escherichia coli and Salmonella spp. in diarrheic neonatal calves in Egypt.Res Vet Sci. 2009;87:373-379.
    • (2009) Res Vet Sci , vol.87 , pp. 373-379
    • Younis, E.E.1    Ahmed, A.M.2    El-Khodery, S.A.3
  • 28
    • 79955775441 scopus 로고    scopus 로고
    • Rapid and sensitive detection of bovine coronavirus and group A bovine rotavirus from fecal samples by using one-step duplex RT-PCR assay
    • Zhu W,Dong J,Haga T, et al.Rapid and sensitive detection of bovine coronavirus and group A bovine rotavirus from fecal samples by using one-step duplex RT-PCR assay.J Vet Med Sci. 2011;73:531-534.
    • (2011) J Vet Med Sci , vol.73 , pp. 531-534
    • Zhu, W.1    Dong, J.2    Haga, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.