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Volumn 28, Issue 16, 2012, Pages 2180-2181

SAAP-RRBS: Streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing

Author keywords

[No Author keywords available]

Indexed keywords

HYDROGEN SULFITE; SULFITE;

EID: 84865091830     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts337     Document Type: Article
Times cited : (48)

References (11)
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    • Chatterjee, A. et al. (2012) Comparison of alignment software for genome-wide bisulphite sequence data. Nucleic acids Res.
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  • 3
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    • Chen, P.Y. et al. (2010) BS Seeker: precise mapping for bisulfite sequencing. BMC Bioinformatics, 11, 203.
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    • Chen, P.Y.1
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    • Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
    • Harris, R.A. et al. (2010) Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications. Nat. Biotechnol., 28, 1097-1105.
    • (2010) Nat. Biotechnol. , vol.28 , pp. 1097-1105
    • Harris, R.A.1
  • 5
    • 79957868920 scopus 로고    scopus 로고
    • Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
    • Krueger, F. and Andrews, S.R. (2011) Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics, 27, 1571-1572.
    • (2011) Bioinformatics , vol.27 , pp. 1571-1572
    • Krueger, F.1    Andrews, S.R.2
  • 6
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    • DNAmethylome analysis using short bisulfite sequencing data
    • Krueger, F. et al. (2012) DNAmethylome analysis using short bisulfite sequencing data. Nat. Methods, 9, 145-151.
    • (2012) Nat. Methods , vol.9 , pp. 145-151
    • Krueger, F.1
  • 7
    • 0038576158 scopus 로고    scopus 로고
    • The power and the promise of DNA methylation markers
    • Laird, P.W. (2003) The power and the promise of DNA methylation markers. Nat. Rev. Cancer, 3, 253-266.
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    • Laird, P.W.1
  • 8
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from high-throughput sequencing reads
    • Martin, M. (2011) Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet J., 17, 3.
    • (2011) EMBnet J , vol.17 , pp. 3
    • Martin, M.1
  • 9
    • 84855231537 scopus 로고    scopus 로고
    • Systematic assessment of reduced representation bisulfite sequencing to human blood samples: a promising method for large-sample-scale epigenomic studies
    • Wang, L. et al. (2012) Systematic assessment of reduced representation bisulfite sequencing to human blood samples: a promising method for large-sample-scale epigenomic studies. J. Biotechnol., 157, 1-6.
    • (2012) J. Biotechnol. , vol.157 , pp. 1-6
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    • BSMAP: whole genome bisulfite sequence MAPping program
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    • RRBSMAP: a fast, accurate and user-friendly alignment tool for reduced representation bisulfite sequencing
    • Xi, Y. et al. (2012) RRBSMAP: a fast, accurate and user-friendly alignment tool for reduced representation bisulfite sequencing. Bioinformatics, 28, 430-432.
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