ChromoHub: A data hub for navigators of chromatin-mediated signalling

Bioinformatics

Volumn 28, Issue 16, 2012, Pages 2205-2206

  Liu, Lihua ^a   Zhen, Xi Ting ^a   Denton, Emily ^a   Marsden, Brian D ^b   Schapira, Matthieu ^a  

^a UNIVERSITY OF TORONTO   (Canada)

^b UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE; HISTONE DEACETYLASE; PROTEIN METHYLTRANSFERASE;

ARTICLE; CHROMATIN; COMPUTER INTERFACE; COMPUTER PROGRAM; GENE EXPRESSION REGULATION; GENETIC DATABASE; GENETIC EPIGENESIS; HISTONE CODE; METABOLISM; PHYLOGENY;

CHROMATIN; DATABASES, GENETIC; EPIGENESIS, GENETIC; GENE EXPRESSION REGULATION; HISTONE CODE; HISTONE DEACETYLASES; HISTONES; PHYLOGENY; PROTEIN METHYLTRANSFERASES; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 84865066583     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts340     Document Type: Article

References (17)

1. Arrowsmith, C.H. et al. (2012) Epigenetic protein families: a new frontier for drug discovery. Nat. Rev. Drug Discov., 11, 384-400.
2. Fierz, B. and Muir, T.W. (2012) Chromatin as an expansive canvas for chemical biology. Nat. Chem. Biol., 8, 417-427.
3. Filippakopoulos, P. et al. (2012) Histone recognition and large-scale structural analysis of the human bromodomain family. Cell, 149, 214-231.
4. Keshava Prasad, T.S. et al. (2009) Human Protein Reference Database-2009 update. Nucleic Acids Res., 37, D767-D772.
5. Kouzarides, T. (2007) Chromatin modifications and their function. Cell, 128, 693-705.
6. Kuo, A.J. et al. (2012) The BAH domain of ORC1 links H4K20me2 to DNAreplication licensing and Meier-Gorlin syndrome. Nature, 484, 115-119.
7. Larkin, M.A. et al. (2007) Clustal W and Clustal X version 2.0. Bioinformatics, 23, 2947-2948.
8. Liu, T. et al. (2007) BindingDB: aweb-accessible database of experimentally determined protein-ligand binding affinities Nucleic Acids Res, 35, D198-D201.
9. Prince, H.M. et al. (2009) Clinical studies of histone deacetylase inhibitors. Clin. Cancer Res., 15, 3958-3969.
10. Punta, M. et al. (2012) The Pfam protein families database. Nucleic Acids Res., 40, D290-D301.
11. Richon, V.M. et al. (2011) Chemogenetic analysis of human protein methyltransferases. Chem. Biol. Drug Des., 78, 199-210.
12. Schultz, J. et al. (2000) SMART: a web-based tool for the study of genetically mobile domains. Nucleic Acids Res., 28, 231-234.
13. Sonnhammer, E. et al. (1998) PFAM: multiple sequence alignments and HMM-profiles of protein domains. Nucl. Acids Res., 26, 320-322.
14. Strahl, B.D. and Allis, C.D. (2000) The language of covalent histone modifications. Nature, 403, 41-45.
15. Szklarczyk, D. et al. (2011) The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res., 39, D561-D568.
16. Taverna, S.D. et al. (2007) How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers. Nat. Struct. Mol. Biol., 14, 1025-1040.
17. Wu, C. et al. (2009) BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources. Genome Biol., 10, R130.