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Volumn 101, Issue 12, 2011, Pages 1553-1561

De novo sequencing and assembly of Azadirachta indica fruit transcriptome

Author keywords

Azadirachta indica; De novo sequencing; Fruit and seed; Transcriptome

Indexed keywords


EID: 84864842708     PISSN: 00113891     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (27)

References (30)
  • 1
    • 84956817633 scopus 로고    scopus 로고
    • Fact sheet on Azadirachta indica (neem) - a versatile tree for the tropics and subtropics
    • Publication of Forest, Farm, and Community Tree Network (FACT Net), Arkansas, United States
    • Stoney, C., Fact sheet on Azadirachta indica (neem) - a versatile tree for the tropics and subtropics. Publication of Forest, Farm, and Community Tree Network (FACT Net), Arkansas, United States, 1997; www.winrock.org/forestry/factnet.htm.
    • (1997)
    • Stoney, C.1
  • 2
    • 84864834289 scopus 로고    scopus 로고
    • Antifungal properties of neem (Azadirachta indica) leaves extract to treat hair dandruff
    • Niharika, A., Aquicio, J. M. and Anand, A., Antifungal properties of neem (Azadirachta indica) leaves extract to treat hair dandruff. Int. Sci. Res. J., 2010, 2, 244-252.
    • (2010) Int. Sci. Res. J. , vol.2 , pp. 244-252
    • Niharika, A.1    Aquicio, J.M.2    Anand, A.3
  • 3
    • 0002925047 scopus 로고    scopus 로고
    • Biological activities and medicinal properties of neem (Azadirachta indica)
    • Biswas, K., Chattopadhyay, I., Banerjee, R. K. and Bandyopadhyay, U., Biological activities and medicinal properties of neem (Azadirachta indica). Curr. Sci., 2002, 82, 1336-1345.
    • (2002) Curr. Sci. , vol.82 , pp. 1336-1345
    • Biswas, K.1    Chattopadhyay, I.2    Banerjee, R.K.3    Bandyopadhyay, U.4
  • 4
    • 0001477712 scopus 로고
    • Chemical and biological investigations on Azadirachta indica (the neem tree)
    • Govindachari, T. R., Chemical and biological investigations on Azadirachta indica (the neem tree). Curr. Sci., 1992, 63, 117-122.
    • (1992) Curr. Sci. , vol.63 , pp. 117-122
    • Govindachari, T.R.1
  • 6
    • 0041769068 scopus 로고
    • (eds), The Treatise on Indian Medicinal Plants, Publications and Information Directorate, CSIR, New Delhi, India
    • Chatterjee, A. and Pakrashi, S. (eds), The Treatise on Indian Medicinal Plants, Publications and Information Directorate, CSIR, New Delhi, India, 1994, vol. 3, p. 76.
    • (1994) , vol.3 , pp. 76
    • Chatterjee, A.1    Pakrashi, S.2
  • 7
    • 0033924227 scopus 로고    scopus 로고
    • Nematicidal potential of the neem tree Azadirachta indica (A. Juss)
    • Akhtar, M., Nematicidal potential of the neem tree Azadirachta indica (A. Juss). Int. Pest Manage. Rev., 2000, 5, 57-66.
    • (2000) Int. Pest Manage. Rev. , vol.5 , pp. 57-66
    • Akhtar, M.1
  • 8
    • 78751570979 scopus 로고    scopus 로고
    • RNA sequencing: advances, challenges and opportunities
    • Ozsolak, F. and Milos, P. M., RNA sequencing: advances, challenges and opportunities. Nature Rev. Genet., 2011, 12, 87-98.
    • (2011) Nature Rev. Genet. , vol.12 , pp. 87-98
    • Ozsolak, F.1    Milos, P.M.2
  • 9
    • 57749195712 scopus 로고    scopus 로고
    • RNA-seq: a revolutionary tool for transcriptomics
    • Wang, Z., Gerstein, M. and Snyder, M., RNA-seq: a revolutionary tool for transcriptomics. Nature Rev. Genet., 2009, 10, 57-63.
    • (2009) Nature Rev. Genet. , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 10
    • 75649135574 scopus 로고    scopus 로고
    • RNA-seq: from technology to biology
    • Marguerat, S. and Bahler, J., RNA-seq: from technology to biology. Cell. Mol. Life Sci., 2010, 67, 569-579.
    • (2010) Cell. Mol. Life Sci. , vol.67 , pp. 569-579
    • Marguerat, S.1    Bahler, J.2
  • 11
    • 67449141880 scopus 로고    scopus 로고
    • RNA-seq-quantitative measurement of expression through massively parallel RNAsequencing
    • Wilhelm, B. T. and Landry, J. R., RNA-seq-quantitative measurement of expression through massively parallel RNAsequencing. Methods, 2009, 48, 249-257.
    • (2009) Methods , vol.48 , pp. 249-257
    • Wilhelm, B.T.1    Landry, J.R.2
  • 12
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: a revolutionary tool for transcriptomics
    • Wang, Z., Gerstein, M. and Synder, M., RNA-Seq: a revolutionary tool for transcriptomics. Nature Rev. Genet., 2009, 10, 57-63.
    • (2009) Nature Rev. Genet. , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Synder, M.3
  • 13
    • 80052960863 scopus 로고    scopus 로고
    • Next-generation transcriptome assembly
    • Martin, J. A. and Wang, Z., Next-generation transcriptome assembly. Nature Rev. Genet., 2011, 7, 671-682.
    • (2011) Nature Rev. Genet. , vol.7 , pp. 671-682
    • Martin, J.A.1    Wang, Z.2
  • 14
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies - the next generation
    • Metzker, M. L., Sequencing technologies - the next generation. Nature Rev. Genet., 2010, 11, 31-46.
    • (2010) Nature Rev. Genet. , vol.11 , pp. 31-46
    • Metzker, M.L.1
  • 15
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • Shendure, J. and Ji, H., Next-generation DNA sequencing. Nature Biotechnol., 2008, 26, 1135-1145.
    • (2008) Nature Biotechnol. , vol.26 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2
  • 16
    • 79960264362 scopus 로고    scopus 로고
    • Full-length transcriptome assembly from RNA-Seq data without a reference genome
    • Grabherr, M. G. et al., Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature Biotechnol., 2011, 29, 644-652.
    • (2011) Nature Biotechnol. , vol.29 , pp. 644-652
    • Grabherr, M.G.1
  • 18
    • 58149178579 scopus 로고    scopus 로고
    • NCBI Reference sequences: current status, policy and new initiatives
    • (Database Issue)
    • Pruitt, K. D., Tatusova, T., Klimke, W. and Maglott, D. R., NCBI Reference sequences: current status, policy and new initiatives. Nucleic Acids Res., 2009, 37 (Database Issue), D32-D36.
    • (2009) Nucleic Acids Res. , vol.37
    • Pruitt, K.D.1    Tatusova, T.2    Klimke, W.3    Maglott, D.R.4
  • 19
    • 0027249595 scopus 로고
    • dbEST - database for 'expressed sequence tags'
    • Boguski, M. S., Lowe, T. M. and Tolstoshev, C. M., dbEST - database for 'expressed sequence tags'. Nature Genet., 1993, 4, 332-333.
    • (1993) Nature Genet. , vol.4 , pp. 332-333
    • Boguski, M.S.1    Lowe, T.M.2    Tolstoshev, C.M.3
  • 20
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa, A., Götz, S., García-Gómez, J. M., Terol, J., Talón, M. and Robles, M., Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics, 2005, 21, 3674-3676.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Götz, S.2    García-Gómez, J.M.3    Terol, J.4    Talón, M.5    Robles, M.6
  • 21
    • 0027968068 scopus 로고
    • ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G. and Gibson, T. J., ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 1994, 22, 4673- 4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 22
    • 0000262264 scopus 로고
    • A combinatorial problem
    • de Bruijn, N. G., A combinatorial problem. K. Ned. Akad. Wet., 1946, 49, 758-764.
    • (1946) K. Ned. Akad. Wet. , vol.49 , pp. 758-764
    • de Bruijn, N.G.1
  • 23
    • 84963017652 scopus 로고
    • Normal recurring decimals
    • Good, I. J., Normal recurring decimals. J. London Math. Soc., 1946, 21, 167-169.
    • (1946) J. London Math. Soc. , vol.21 , pp. 167-169
    • Good, I.J.1
  • 24
    • 0036950836 scopus 로고    scopus 로고
    • Relationships among seed plants inferred from highly conserved genes: sorting conflicting phylogenetic signals among ancient lineages
    • Magallon, S. and Sanderson, M. J., Relationships among seed plants inferred from highly conserved genes: sorting conflicting phylogenetic signals among ancient lineages. Am. J. Bot., 2002, 89, 1991-2006.
    • (2002) Am. J. Bot. , vol.89 , pp. 1991-2006
    • Magallon, S.1    Sanderson, M.J.2
  • 25
    • 62349142267 scopus 로고    scopus 로고
    • Transcriptome analysis of a spontaneous mutant in sweet orange [Citrus sinensis (L.) Osbeck] during fruit development
    • Liu, Q. et al., Transcriptome analysis of a spontaneous mutant in sweet orange [Citrus sinensis (L.) Osbeck] during fruit development. J. Exp. Bot., 2009, 60, 801-813.
    • (2009) J. Exp. Bot. , vol.60 , pp. 801-813
    • Liu, Q.1
  • 26
    • 84864860980 scopus 로고    scopus 로고
    • Identification and cloning of 11S globulin, a new minor allergen from pistachio nut. Submitted to the Allergen nomenclature subcommittee of the International Union of Immunological Societies, and to the EMBL/GenBank/DDBJ databases
    • Beyer, K., Grishina, G., Bardina, L., Stalcup, D. and Sampson, H., Identification and cloning of 11S globulin, a new minor allergen from pistachio nut. Submitted to the Allergen nomenclature subcommittee of the International Union of Immunological Societies, and to the EMBL/GenBank/DDBJ databases, 2008.
    • (2008)
    • Beyer, K.1    Grishina, G.2    Bardina, L.3    Stalcup, D.4    Sampson, H.5
  • 28
    • 75249106739 scopus 로고    scopus 로고
    • Characterization of the 11S globulin gene family in the castor plant Ricinus communis L
    • Chileh, T., Esteban-Garcia, B., Alonso, D. L. and Garcia-Maroto, F., Characterization of the 11S globulin gene family in the castor plant Ricinus communis L. J. Agric. Food Chem., 2010, 58, 272- 281.
    • (2010) J. Agric. Food Chem. , vol.58 , pp. 272-281
    • Chileh, T.1    Esteban-Garcia, B.2    Alonso, D.L.3    Garcia-Maroto, F.4
  • 29
    • 8844275864 scopus 로고    scopus 로고
    • 26S rRNA-based internal control gene primer pair for reverse transcription-polymerase chain reaction-based quantitative expression studies in diverse plant species
    • Singh, K. et al., 26S rRNA-based internal control gene primer pair for reverse transcription-polymerase chain reaction-based quantitative expression studies in diverse plant species. Anal. Biochem., 2004, 335, 330-333.
    • (2004) Anal. Biochem. , vol.335 , pp. 330-333
    • Singh, K.1
  • 30
    • 81355134083 scopus 로고    scopus 로고
    • Validation and application of reference genes for quantitative gene expression analyses in various tissues of Bupleurum chinense
    • Dong, L., Sui, C., Liu, Y., Yang, Y., Wei, J. and Yang, Y., Validation and application of reference genes for quantitative gene expression analyses in various tissues of Bupleurum chinense. Mol. Biol. Rep., 2010, 38(8), 5017-5023
    • (2010) Mol. Biol. Rep. , vol.38 , Issue.8 , pp. 5017-5023
    • Dong, L.1    Sui, C.2    Liu, Y.3    Yang, Y.4    Wei, J.5    Yang, Y.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.