Atomic force microscopy for the study of membrane proteins

Current Opinion in Biotechnology

Volumn 23, Issue 4, 2012, Pages 510-515

  Fotiadis, Dimitrios ^a  

^a UNIVERSITY OF BERN   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

AFM; ATOMIC FORCE MICROSCOPE (AFM); BIOLOGICAL PROCESS; CELL-CELL COMMUNICATIONS; CONFORMATIONAL CHANGE; MEMBRANE PROTEINS; MOLECULAR TRANSPORT; NATIVE ENVIRONMENT; NATIVE MEMBRANES; SINGLE MOLECULE LEVEL; SUBNANOMETER RESOLUTION; SUPRAMOLECULAR ORGANIZATIONS;

ATOMIC FORCE MICROSCOPY; ENERGY CONVERSION; LIPID BILAYERS; SIGNAL TRANSDUCTION;

PROTEINS;

CALCIUM ION; CONNEXIN 26; CYCLIC AMP; MEMBRANE PROTEIN; OUTER MEMBRANE PROTEIN F; VOLTAGE DEPENDENT ANION CHANNEL;

ATOMIC FORCE MICROSCOPY; CONFORMATIONAL TRANSITION; ELECTRON MICROSCOPY; HALOBACTERIUM SALINARUM; LIPID BILAYER; MITOCHONDRIAL MEMBRANE; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; OUTER MEMBRANE; PRIORITY JOURNAL; PROCESS DEVELOPMENT; PROTEIN CONFORMATION; PROTEIN DETERMINATION; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PURPLE MEMBRANE; REVIEW; SIGNAL NOISE RATIO; SIGNAL TRANSDUCTION; STRUCTURE ANALYSIS; SUPRAMOLECULAR CHEMISTRY; X RAY CRYSTALLOGRAPHY;

ANIMALS; BACTERIA; EUKARYOTA; LIPID BILAYERS; MEMBRANE PROTEINS; MICROSCOPY, ATOMIC FORCE; NANOTECHNOLOGY;

EID: 84864808515     PISSN: 09581669     EISSN: 18790429     Source Type: Journal    
DOI: 10.1016/j.copbio.2011.11.032     Document Type: Review

References (40)

1. Stevens T.J., Arkin I.T. Do more complex organisms have a greater proportion of membrane proteins in their genomes?. Proteins 2000, 39:417-420.
2. Wallin E., von Heijne G. Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms. Protein Sci 1998, 7:1029-1038.
3. Marsh D. Lateral pressure in membranes. Biochim Biophys Acta 1996, 1286:183-223.
4. Binnig G., Quate C.F., Gerber C. Atomic force microscope. Phys Rev Lett 1986, 56:930-933.
5. Drake B., Prater C.B., Weisenhorn A.L., Gould S.A., Albrecht T.R., Quate C.F., Cannell D.S., Hansma H.G., Hansma P.K. Imaging crystals, polymers, and processes in water with the atomic force microscope. Science 1989, 243:1586-1589.
6. Müller D.J. AFM: a nanotool in membrane biology. Biochemistry 2008, 47:7986-7998.
7. Frederix P.L., Bosshart P.D., Engel A. Atomic force microscopy of biological membranes. Biophys J 2009, 96:329-338.
8. Engel A., Müller D.J. Observing single biomolecules at work with the atomic force microscope. Nat Struct Biol 2000, 7:715-718.
9. Müller D.J., Engel A. Atomic force microscopy and spectroscopy of native membrane proteins. Nat Protoc 2007, 2:2191-2197.
10. Müller D.J., Fotiadis D., Scheuring S., Müller S.A., Engel A. Electrostatically balanced subnanometer imaging of biological specimens by atomic force microscope. Biophys J 1999, 76:1101-1111.
11. Canale C., Torre B., Ricci D., Braga P.C. Recognizing and avoiding artifacts in atomic force microscopy imaging. Methods Mol Biol 2011, 736:31-43.
12. Kukulski W., Kaufmann T., Braun T., Remigy H.-W., Fotiadis D., Engel A. Assessing the structure and dynamics of native membrane proteins. Structural Biology of Membrane Proteins 2006, Royal Society of Chemistry. R. Grisshammer, S.K. Buchanan (Eds.).
13. Schabert F.A., Engel A. Reproducible acquisition of Escherichia coli porin surface topographs by atomic force microscopy. Biophys J 1994, 67:2394-2403.
14. Heymann J.B., Müller D.J., Landau E.M., Rosenbusch J.P., Pebay-Peyroula E., Büldt G., Engel A. Charting the surfaces of the purple membrane. J Struct Biol 1999, 128:243-249.
15. Fotiadis D., Hasler L., Müller D.J., Stahlberg H., Kistler J., Engel A. Surface tongue-and-groove contours on lens MIP facilitate cell-to-cell adherence. J Mol Biol 2000, 300:779-789.
16. Harries W.E., Akhavan D., Miercke L.J., Khademi S., Stroud R.M. The channel architecture of aquaporin 0 at a 2.2-å resolution. Proc Natl Acad Sci USA 2004, 101:14045-14050.
17. Gonen T., Cheng Y., Sliz P., Hiroaki Y., Fujiyoshi Y., Harrison S.C., Walz T. Lipid-protein interactions in double-layered two-dimensional AQP0 crystals. Nature 2005, 438:633-638.
18. Fotiadis D., Liang Y., Filipek S., Saperstein D.A., Engel A., Palczewski K. Atomic-force microscopy: rhodopsin dimers in native disc membranes. Nature 2003, 421:127-128.
19. Fotiadis D., Jastrzebska B., Philippsen A., Müller D.J., Palczewski K., Engel A. Structure of the rhodopsin dimer: a working model for G-protein-coupled receptors. Curr Opin Struct Biol 2006, 16:252-259.
20. Ridge K.D., Palczewski K. Visual rhodopsin sees the light: structure and mechanism of G protein signaling. J Biol Chem 2007, 282:9297-9301.
21. Jastrzebska B., Tsybovsky Y., Palczewski K. Complexes between photoactivated rhodopsin and transducin: progress and questions. Biochem J 2010, 428:1-10.
22. Hoogenboom B.W., Suda K., Engel A., Fotiadis D. The supramolecular assemblies of voltage-dependent anion channels in the native membrane. J Mol Biol 2007, 370:246-255.
23. Goncalves R.P., Buzhynskyy N., Prima V., Sturgis J.N., Scheuring S. Supramolecular assembly of VDAC in native mitochondrial outer membranes. J Mol Biol 2007, 369:413-418.
24. Hoogenboom B.W., Hug H.J., Pellmont Y., Martin S., Frederix P.L.T.M., Fotiadis D., Engel A. Quantitative dynamic-mode scanning force microscopy in liquid. Appl Phys Lett 2006, 88:193109.
25. Hoogenboom B.W., Frederix P.L., Fotiadis D., Hug H.J., Engel A. Potential of interferometric cantilever detection and its application for SFM/AFM in liquids. Nanotechnology 2008, 19:384019.
26. Shoshan-Barmatz V., De Pinto V., Zweckstetter M., Raviv Z., Keinan N., Arbel N. VDAC, a multi-functional mitochondrial protein regulating cell life and death. Mol Aspects Med 2010, 31:227-285.
27. Sturgis J.N., Tucker J.D., Olsen J.D., Hunter C.N., Niederman R.A. Atomic force microscopy studies of native photosynthetic membranes. Biochemistry 2009, 48:3679-3698.
28. Kirchhoff H., Lenhert S., Buchel C., Chi L., Nield J. Probing the organization of photosystem II in photosynthetic membranes by atomic force microscopy. Biochemistry 2008, 47:431-440.
29. Müller D.J., Engel A. Voltage and pH-induced channel closure of porin OmpF visualized by atomic force microscopy. J Mol Biol 1999, 285:1347-1351.
30. Mari S.A., Koster S., Bippes C.A., Yildiz O., Kühlbrandt W., Müller D.J. pH-induced conformational change of the beta-barrel-forming protein OmpG reconstituted into native E. coli lipids. J Mol Biol 2010, 396:610-616.
31. Müller D.J., Hand G.M., Engel A., Sosinsky G. Conformational changes in surface structures of isolated Connexin26 gap junctions. EMBO J 2002, 21:3598-3607.
32. Yu J., Bippes C.A., Hand G.M., Müller D.J., Sosinsky G.E. Aminosulfonate modulated pH-induced conformational changes in connexin26 hemichannels. J Biol Chem 2007, 282:8895-8904.
33. Mari S.A., Pessoa J., Altieri S., Hensen U., Thomas L., Morais-Cabral J.H., Muller D.J. Gating of the MlotiK1 potassium channel involves large rearrangements of the cyclic nucleotide-binding domains. Proc Natl Acad Sci USA 2011, 108:20802-20807.
34. Picco L.M., Bozec L., Ulcinas A., Engledew D.J., Antognozzi M., Horton M.A., Miles M.J. Breaking the speed limit with atomic force microscopy. Nanotechnology 2007, 18:044030.
35. Fantner G.E., Schitter G., Kindt J.H., Ivanov T., Ivanova K., Patel R., Holten-Andersen N., Adams J., Thurner P.J., Rangelow I.W., et al. Components for high speed atomic force microscopy. Ultramicroscopy 2006, 106:881-887.
36. Ando T., Kodera N., Takai E., Maruyama D., Saito K., Toda A. A high-speed atomic force microscope for studying biological macromolecules. Proc Natl Acad Sci USA 2001, 98:12468-12472.
37. Yamamoto D., Uchihashi T., Kodera N., Yamashita H., Nishikori S., Ogura T., Shibata M., Ando T. High-speed atomic force microscopy techniques for observing dynamic biomolecular processes. Methods Enzymol 2010, 475:541-564.
38. Uchihashi T., Ando T. High-speed atomic force microscopy and biomolecular processes. Methods Mol Biol 2011, 736:285-300.
39. Shibata M., Uchihashi T., Yamashita H., Kandori H., Ando T. Structural changes in bacteriorhodopsin in response to alternate illumination observed by high-speed atomic force microscopy. Angew Chem Int Ed 2011, 50:4410-4413.
40. Shibata M., Yamashita H., Uchihashi T., Kandori H., Ando T. High-speed atomic force microscopy shows dynamic molecular processes in photoactivated bacteriorhodopsin. Nat Nanotechnol 2010, 5:208-212.