-
1
-
-
60149088848
-
Origins and Mechanisms of miRNAs and siRNAs
-
Carthew RW, Sontheimer EJ, (2009) Origins and Mechanisms of miRNAs and siRNAs. Cell 136: 642-655.
-
(2009)
Cell
, vol.136
, pp. 642-655
-
-
Carthew, R.W.1
Sontheimer, E.J.2
-
2
-
-
78649378267
-
MicroRNA functions in stress responses
-
Leung AK, Sharp PA, (2010) MicroRNA functions in stress responses. Mol Cell 40: 205-215.
-
(2010)
Mol Cell
, vol.40
, pp. 205-215
-
-
Leung, A.K.1
Sharp, P.A.2
-
3
-
-
78649526236
-
MicroRNAs: emerging key regulators of hematopoiesis
-
Havelange V, Garzon R, (2010) MicroRNAs: emerging key regulators of hematopoiesis. Am J Hematol 85: 935-942.
-
(2010)
Am J Hematol
, vol.85
, pp. 935-942
-
-
Havelange, V.1
Garzon, R.2
-
4
-
-
77954284275
-
Low-dose radiation-induced responses: focusing on epigenetic regulation
-
Ma S, Liu X, Jiao B, Yang Y, (2010) Low-dose radiation-induced responses: focusing on epigenetic regulation. Int J Radiat Biol 86: 517-528.
-
(2010)
Int J Radiat Biol
, vol.86
, pp. 517-528
-
-
Ma, S.1
Liu, X.2
Jiao, B.3
Yang, Y.4
-
5
-
-
77949827764
-
MicroRNAs as immune regulators: implications for transplantation
-
Harris A, Krams SM, Martinez OM, (2010) MicroRNAs as immune regulators: implications for transplantation. Am J Transplant 10: 713-719.
-
(2010)
Am J Transplant
, vol.10
, pp. 713-719
-
-
Harris, A.1
Krams, S.M.2
Martinez, O.M.3
-
6
-
-
78650179779
-
Role of microRNAs in cardiovascular disease: therapeutic challenges and potentials
-
Port JD, Sucharov C, (2010) Role of microRNAs in cardiovascular disease: therapeutic challenges and potentials. J Cardiovasc Pharmacol 56: 444-453.
-
(2010)
J Cardiovasc Pharmacol
, vol.56
, pp. 444-453
-
-
Port, J.D.1
Sucharov, C.2
-
7
-
-
78649727507
-
The involvement of microRNAs in Type 2 diabetes
-
Ferland-McCollough D, Ozanne SE, Siddle K, Willis AE, Bushell M, (2010) The involvement of microRNAs in Type 2 diabetes. Biochem Soc Trans 38: 1565-1570.
-
(2010)
Biochem Soc Trans
, vol.38
, pp. 1565-1570
-
-
Ferland-McCollough, D.1
Ozanne, S.E.2
Siddle, K.3
Willis, A.E.4
Bushell, M.5
-
8
-
-
78650034475
-
miRNAs in human cancer
-
Farazi TA, Spitzer JI, Morozov P, Tuschl T, (2011) miRNAs in human cancer. J Pathol 223: 102-115.
-
(2011)
J Pathol
, vol.223
, pp. 102-115
-
-
Farazi, T.A.1
Spitzer, J.I.2
Morozov, P.3
Tuschl, T.4
-
9
-
-
14044251458
-
Human MicroRNA targets
-
John B, Enright AJ, Aravin A, Tuschl T, Sander C, et al. (2004) Human MicroRNA targets. PLoS Biol 2: e363.
-
(2004)
PLoS Biol
, vol.2
-
-
John, B.1
Enright, A.J.2
Aravin, A.3
Tuschl, T.4
Sander, C.5
-
10
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis BP, Burge CB, Bartel DP, (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
11
-
-
34250805982
-
MicroRNA targeting specificity in mammals: determinants beyond seed pairing
-
Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, et al. (2007) MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol Cell 27: 91-105.
-
(2007)
Mol Cell
, vol.27
, pp. 91-105
-
-
Grimson, A.1
Farh, K.K.2
Johnston, W.K.3
Garrett-Engele, P.4
Lim, L.P.5
-
12
-
-
60149095444
-
Most mammalian mRNAs are conserved targets of microRNAs
-
Friedman RC, Farh KK, Burge CB, Bartel DP, (2009) Most mammalian mRNAs are conserved targets of microRNAs. Genome Res 19: 92-105.
-
(2009)
Genome Res
, vol.19
, pp. 92-105
-
-
Friedman, R.C.1
Farh, K.K.2
Burge, C.B.3
Bartel, D.P.4
-
13
-
-
70449372292
-
Accurate microRNA target prediction correlates with protein repression levels
-
Maragkakis M, Alexiou P, Papadopoulos GL, Reczko M, Dalamagas T, et al. (2009) Accurate microRNA target prediction correlates with protein repression levels. BMC Bioinformatics 10: 295.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 295
-
-
Maragkakis, M.1
Alexiou, P.2
Papadopoulos, G.L.3
Reczko, M.4
Dalamagas, T.5
-
14
-
-
67650747402
-
DIANA-microT web server: elucidating microRNA functions through target prediction
-
Maragkakis M, Reczko M, Simossis VA, Alexiou P, Papadopoulos GL, et al. (2009) DIANA-microT web server: elucidating microRNA functions through target prediction. Nucleic Acids Res 37: W273-276.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Maragkakis, M.1
Reczko, M.2
Simossis, V.A.3
Alexiou, P.4
Papadopoulos, G.L.5
-
15
-
-
77950348609
-
Genome-wide dissection of microRNA functions and cotargeting networks using gene set signatures
-
Tsang JS, Ebert MS, van Oudenaarden A, (2010) Genome-wide dissection of microRNA functions and cotargeting networks using gene set signatures. Mol Cell 38: 140-153.
-
(2010)
Mol Cell
, vol.38
, pp. 140-153
-
-
Tsang, J.S.1
Ebert, M.S.2
van Oudenaarden, A.3
-
16
-
-
20944450160
-
Combinatorial microRNA target predictions
-
Krek A, Grun D, Poy MN, Wolf R, Rosenberg L, et al. (2005) Combinatorial microRNA target predictions. Nat Genet 37: 495-500.
-
(2005)
Nat Genet
, vol.37
, pp. 495-500
-
-
Krek, A.1
Grun, D.2
Poy, M.N.3
Wolf, R.4
Rosenberg, L.5
-
17
-
-
33748587841
-
A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes
-
Miranda KC, Huynh T, Tay Y, Ang YS, Tam WL, et al. (2006) A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes. Cell 126: 1203-1217.
-
(2006)
Cell
, vol.126
, pp. 1203-1217
-
-
Miranda, K.C.1
Huynh, T.2
Tay, Y.3
Ang, Y.S.4
Tam, W.L.5
-
18
-
-
34748821761
-
The role of site accessibility in microRNA target recognition
-
Kertesz M, Iovino N, Unnerstall U, Gaul U, Segal E, (2007) The role of site accessibility in microRNA target recognition. Nat Genet 39: 1278-1284.
-
(2007)
Nat Genet
, vol.39
, pp. 1278-1284
-
-
Kertesz, M.1
Iovino, N.2
Unnerstall, U.3
Gaul, U.4
Segal, E.5
-
19
-
-
67650754354
-
DIANA-mirPath: Integrating human and mouse microRNAs in pathways
-
Papadopoulos GL, Alexiou P, Maragkakis M, Reczko M, Hatzigeorgiou AG, (2009) DIANA-mirPath: Integrating human and mouse microRNAs in pathways. Bioinformatics 25: 1991-1993.
-
(2009)
Bioinformatics
, vol.25
, pp. 1991-1993
-
-
Papadopoulos, G.L.1
Alexiou, P.2
Maragkakis, M.3
Reczko, M.4
Hatzigeorgiou, A.G.5
-
20
-
-
79551598113
-
Independent component and pathway-based analysis of miRNA-regulated gene expression in a model of type 1 diabetes
-
Bang-Berthelsen CH, Pedersen L, Floyel T, Hagedorn PH, Gylvin T, et al. (2011) Independent component and pathway-based analysis of miRNA-regulated gene expression in a model of type 1 diabetes. BMC Genomics 12: 97.
-
(2011)
BMC Genomics
, vol.12
, pp. 97
-
-
Bang-Berthelsen, C.H.1
Pedersen, L.2
Floyel, T.3
Hagedorn, P.H.4
Gylvin, T.5
-
21
-
-
34548400259
-
A systems biology approach for pathway level analysis
-
Draghici S, Khatri P, Tarca AL, Amin K, Done A, et al. (2007) A systems biology approach for pathway level analysis. Genome Res 17: 1537-1545.
-
(2007)
Genome Res
, vol.17
, pp. 1537-1545
-
-
Draghici, S.1
Khatri, P.2
Tarca, A.L.3
Amin, K.4
Done, A.5
-
22
-
-
38549124383
-
The microRNA.org resource: targets and expression
-
Betel D, Wilson M, Gabow A, Marks DS, Sander C, (2008) The microRNA.org resource: targets and expression. Nucleic Acids Res 36: D149-153.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Betel, D.1
Wilson, M.2
Gabow, A.3
Marks, D.S.4
Sander, C.5
-
23
-
-
0842321501
-
MicroRNA targets in Drosophila
-
Enright AJ, John B, Gaul U, Tuschl T, Sander C, et al. (2003) MicroRNA targets in Drosophila. Genome Biol 5: R1.
-
(2003)
Genome Biol
, vol.5
-
-
Enright, A.J.1
John, B.2
Gaul, U.3
Tuschl, T.4
Sander, C.5
-
24
-
-
58149203235
-
The database of experimentally supported targets: a functional update of TarBase
-
Papadopoulos GL, Reczko M, Simossis VA, Sethupathy P, Hatzigeorgiou AG, (2009) The database of experimentally supported targets: a functional update of TarBase. Nucleic Acids Res 37: D155-158.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Papadopoulos, G.L.1
Reczko, M.2
Simossis, V.A.3
Sethupathy, P.4
Hatzigeorgiou, A.G.5
-
25
-
-
58149186499
-
miRecords: an integrated resource for microRNA-target interactions
-
Xiao F, Zuo Z, Cai G, Kang S, Gao X, et al. (2009) miRecords: an integrated resource for microRNA-target interactions. Nucleic Acids Res 37: D105-110.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Xiao, F.1
Zuo, Z.2
Cai, G.3
Kang, S.4
Gao, X.5
-
26
-
-
58349111875
-
AmiGO: online access to ontology and annotation data
-
Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, et al. (2009) AmiGO: online access to ontology and annotation data. Bioinformatics 25: 288-289.
-
(2009)
Bioinformatics
, vol.25
, pp. 288-289
-
-
Carbon, S.1
Ireland, A.2
Mungall, C.J.3
Shu, S.4
Marshall, B.5
-
27
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, et al. (2008) KEGG for linking genomes to life and the environment. Nucleic Acids Res 36: D480-484.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
-
28
-
-
58149186477
-
PID: the Pathway Interaction Database
-
Schaefer CF, Anthony K, Krupa S, Buchoff J, Day M, et al. (2009) PID: the Pathway Interaction Database. Nucleic Acids Res 37: D674-679.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Schaefer, C.F.1
Anthony, K.2
Krupa, S.3
Buchoff, J.4
Day, M.5
-
29
-
-
58149177166
-
Reactome knowledgebase of human biological pathways and processes
-
Matthews L, Gopinath G, Gillespie M, Caudy M, Croft D, et al. (2009) Reactome knowledgebase of human biological pathways and processes. Nucleic Acids Res 37: D619-622.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Matthews, L.1
Gopinath, G.2
Gillespie, M.3
Caudy, M.4
Croft, D.5
-
30
-
-
79952049614
-
miRNA-mRNA integrated analysis reveals roles for miRNAs in primary breast tumors
-
Enerly E, Steinfeld I, Kleivi K, Leivonen SK, Aure MR, et al. (2011) miRNA-mRNA integrated analysis reveals roles for miRNAs in primary breast tumors. PLoS One 6: e16915.
-
(2011)
PLoS One
, vol.6
-
-
Enerly, E.1
Steinfeld, I.2
Kleivi, K.3
Leivonen, S.K.4
Aure, M.R.5
-
31
-
-
77949423427
-
Deregulation of microRNA expression in the different genetic subtypes of multiple myeloma and correlation with gene expression profiling
-
Gutierrez NC, Sarasquete ME, Misiewicz-Krzeminska I, Delgado M, De Las Rivas J, et al. (2010) Deregulation of microRNA expression in the different genetic subtypes of multiple myeloma and correlation with gene expression profiling. Leukemia 24: 629-637.
-
(2010)
Leukemia
, vol.24
, pp. 629-637
-
-
Gutierrez, N.C.1
Sarasquete, M.E.2
Misiewicz-Krzeminska, I.3
Delgado, M.4
de Las Rivas, J.5
-
32
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar R, Domrachev M, Lash AE, (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30: 207-210.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
33
-
-
11144358653
-
Jagged1-induced Notch signaling drives proliferation of multiple myeloma cells
-
Jundt F, Probsting KS, Anagnostopoulos I, Muehlinghaus G, Chatterjee M, et al. (2004) Jagged1-induced Notch signaling drives proliferation of multiple myeloma cells. Blood 103: 3511-3515.
-
(2004)
Blood
, vol.103
, pp. 3511-3515
-
-
Jundt, F.1
Probsting, K.S.2
Anagnostopoulos, I.3
Muehlinghaus, G.4
Chatterjee, M.5
-
34
-
-
33746378638
-
Signalling and survival pathways in multiple myeloma
-
Bommert K, Bargou RC, Stuhmer T, (2006) Signalling and survival pathways in multiple myeloma. Eur J Cancer 42: 1574-1580.
-
(2006)
Eur J Cancer
, vol.42
, pp. 1574-1580
-
-
Bommert, K.1
Bargou, R.C.2
Stuhmer, T.3
-
35
-
-
57849158165
-
Notch inhibition blocks multiple myeloma cell-induced osteoclast activation
-
Schwarzer R, Kaiser M, Acikgoez O, Heider U, Mathas S, et al. (2008) Notch inhibition blocks multiple myeloma cell-induced osteoclast activation. Leukemia 22: 2273-2277.
-
(2008)
Leukemia
, vol.22
, pp. 2273-2277
-
-
Schwarzer, R.1
Kaiser, M.2
Acikgoez, O.3
Heider, U.4
Mathas, S.5
-
36
-
-
33646484482
-
Platelets and thrombosis in myeloproliferative diseases
-
Harrison CN, (2005) Platelets and thrombosis in myeloproliferative diseases. Hematology Am Soc Hematol Educ Program pp. 409-415.
-
(2005)
Hematology Am Soc Hematol Educ Program
, pp. 409-415
-
-
Harrison, C.N.1
-
39
-
-
33947683449
-
Thrombosis in multiple myeloma
-
Zangari M, Elice F, Fink L, Tricot G, (2007) Thrombosis in multiple myeloma. Expert Rev Anticancer Ther 7: 307-315.
-
(2007)
Expert Rev Anticancer Ther
, vol.7
, pp. 307-315
-
-
Zangari, M.1
Elice, F.2
Fink, L.3
Tricot, G.4
-
40
-
-
13944278899
-
Epigallocatechin-3-gallate induces apoptosis in estrogen receptor-negative human breast carcinoma cells via modulation in protein expression of p53 and Bax and caspase-3 activation
-
Roy AM, Baliga MS, Katiyar SK, (2005) Epigallocatechin-3-gallate induces apoptosis in estrogen receptor-negative human breast carcinoma cells via modulation in protein expression of p53 and Bax and caspase-3 activation. Mol Cancer Ther 4: 81-90.
-
(2005)
Mol Cancer Ther
, vol.4
, pp. 81-90
-
-
Roy, A.M.1
Baliga, M.S.2
Katiyar, S.K.3
-
41
-
-
33751161701
-
Induction of apoptosis in estrogen receptor-negative breast cancer cells by natural and synthetic cyclopentenones: role of the IkappaB kinase/nuclear factor-kappaB pathway
-
Ciucci A, Gianferretti P, Piva R, Guyot T, Snape TJ, et al. (2006) Induction of apoptosis in estrogen receptor-negative breast cancer cells by natural and synthetic cyclopentenones: role of the IkappaB kinase/nuclear factor-kappaB pathway. Mol Pharmacol 70: 1812-1821.
-
(2006)
Mol Pharmacol
, vol.70
, pp. 1812-1821
-
-
Ciucci, A.1
Gianferretti, P.2
Piva, R.3
Guyot, T.4
Snape, T.J.5
-
42
-
-
77958069025
-
Identification of a novel biomarker, SEMA5A, for non-small cell lung carcinoma in nonsmoking women
-
Lu TP, Tsai MH, Lee JM, Hsu CP, Chen PC, et al. (2010) Identification of a novel biomarker, SEMA5A, for non-small cell lung carcinoma in nonsmoking women. Cancer Epidemiol Biomarkers Prev 19: 2590-2597.
-
(2010)
Cancer Epidemiol Biomarkers Prev
, vol.19
, pp. 2590-2597
-
-
Lu, T.P.1
Tsai, M.H.2
Lee, J.M.3
Hsu, C.P.4
Chen, P.C.5
-
43
-
-
69449097679
-
Semaphorin signaling in cancer cells and in cells of the tumor microenvironment-two sides of a coin
-
Capparuccia L, Tamagnone L, (2009) Semaphorin signaling in cancer cells and in cells of the tumor microenvironment-two sides of a coin. J Cell Sci 122: 1723-1736.
-
(2009)
J Cell Sci
, vol.122
, pp. 1723-1736
-
-
Capparuccia, L.1
Tamagnone, L.2
-
44
-
-
22144454962
-
Semaphorins in cancer
-
Neufeld G, Shraga-Heled N, Lange T, Guttmann-Raviv N, Herzog Y, et al. (2005) Semaphorins in cancer. Front Biosci 10: 751-760.
-
(2005)
Front Biosci
, vol.10
, pp. 751-760
-
-
Neufeld, G.1
Shraga-Heled, N.2
Lange, T.3
Guttmann-Raviv, N.4
Herzog, Y.5
-
45
-
-
23844555629
-
Consensus scoring criteria for improving enrichment in virtual screening
-
Yang JM, Chen YF, Shen TW, Kristal BS, Hsu DF, (2005) Consensus scoring criteria for improving enrichment in virtual screening. J Chem Inf Model 45: 1134-1146.
-
(2005)
J Chem Inf Model
, vol.45
, pp. 1134-1146
-
-
Yang, J.M.1
Chen, Y.F.2
Shen, T.W.3
Kristal, B.S.4
Hsu, D.F.5
-
46
-
-
84900240111
-
Combinatorial Fusion Analysis: Methods and Practice of Combining Multiple Scoring Systems
-
S KB
-
Hsu DF, Chung Y-S, S KB, (2006) Combinatorial Fusion Analysis: Methods and Practice of Combining Multiple Scoring Systems. Advanced Data Mining Technologies in Bioinformatics, IdealGroup Inc pp. 32-62.
-
(2006)
, pp. 32-62
-
-
Hsu, D.F.1
Chung, Y.-S.2
-
47
-
-
78249232295
-
Rank-Score Characteristics (RSC) Function and Cognitive Diversity
-
S KB
-
Hsu DF, S KB, Schweikert C, (2010) Rank-Score Characteristics (RSC) Function and Cognitive Diversity. Brain Informatics pp. 42-54.
-
(2010)
, pp. 42-54
-
-
Hsu, D.F.1
Schweikert, C.2
-
48
-
-
0036645146
-
MicroRNAs in plants
-
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, (2002) MicroRNAs in plants. Genes Dev 16: 1616-1626.
-
(2002)
Genes Dev
, vol.16
, pp. 1616-1626
-
-
Reinhart, B.J.1
Weinstein, E.G.2
Rhoades, M.W.3
Bartel, B.4
Bartel, D.P.5
-
49
-
-
79959967431
-
psRNATarget: a plant small RNA target analysis server
-
Dai X, Zhao PX, (2011) psRNATarget: a plant small RNA target analysis server. Nucleic Acids Res 39: W155-159.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Dai, X.1
Zhao, P.X.2
|