The smaller vesicomyid bivalves in the genus Isorropodon (Bivalvia, Vesicomyidae, Pliocardiinae) also harbour chemoautotrophic symbionts

Symbiosis

Volumn 56, Issue 3, 2012, Pages 129-137

  Rodrigues, Clara F ^a,b   Cunha, Marina R ^b   Olu, Karine ^c   Duperron, Sébastien ^a  

^a SORBONNE UNIVERSITÉ   (France)

^b UNIVERSITY OF AVEIRO   (Portugal)

^c IFREMER   (France)

Author keywords

Atlantic; Isorropodon; Mediterranean; Reduced environments; Symbioses; Vesicomyids

Indexed keywords

BIOMARKER; BIVALVE; CHEMOAUTOTROPHY; COLD SEEP; EVOLUTIONARY BIOLOGY; HYBRIDIZATION; PHYLOGENY; SYMBIONT; SYMBIOSIS;

ATLANTIC OCEAN; GULF OF CADIZ; GULF OF GUINEA; MEDITERRANEAN SEA; MEDITERRANEAN SEA (EAST);

BACTERIA (MICROORGANISMS); BIVALVIA; VESICOMYIDAE;

EID: 84864615023     PISSN: 03345114     EISSN: 18787665     Source Type: Journal    
DOI: 10.1007/s13199-012-0168-0     Document Type: Article

References (48)

1. Allen JA (2001) The family Kelliellidae (Bivalvia: Heterodonta) from the deep Atlantic and its relationship with the family Vesicomyidae. Zool J Linn Soc-Lond 131:199-226
2. Altschul SF, Madden TL, Schaeffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25(17):3389-3402 (Pubitemid 27359211)
3. Amano K, Kiel S (2007) Fossil vesicomyid bivalves from the North Pacific region. Veliger 49:270-293
4. Baco AR, Smith CR, Peek AS, Roderick GK, Vrijenhoek RC (1999) The phylogenetic relationships of whale-fall vesicomyid clams based on mitochondrial COI DNA sequences. Mar Ecol Prog Ser 182:137-147 (Pubitemid 29308105)
5. Carlier A, Ritt B, Rodrigues CF, Sarrazin J, Olu K, Grall J, Clavier J (2010) Heterogeneous energetic pathways and carbon sources on deep eastern Mediterranean cold seep communities. Mar Biol 157 (11):2545-2565
6. Cary SC, Giovannoni SJ (1993) Transovarial inheritance of endosymbiotic bacteria in clams inhabiting deep-sea hydrothermal vents and cold seeps. Proc Natl Acad Sci 90:5695-5699 (Pubitemid 23176228)
7. Cole JR, Chai B, Marsh TL, Farris RJ,Wang Q, Kulam SA, Chandra S, McGarrell DM, Schmiedl TM, Garrity GM, Tiedje JM (2003) The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res 31(1):442-443 (Pubitemid 36150424)
8. Cosel RV, Olu K (2009) Large Vesicomyidae (Mollusca: Bivalvia) from cold seeps in the gulf of Guinea off the coasts of Gabon, Congo and northern Angola. Deep-Sea Res II 56:2350-2379
9. Cosel RV, Salas C (2001) Vesicomyidae (Mollusca: Bivalvia) of the genera Vesicomya, Waisiuconcha, Isorropodon and Callogonia in the eastern Atlantic and the Mediterranean. Sarsia 86(4-5):333-366
10. Decker C, Olu K, Cunha RL, Arnaud-Haond S (2012) Phylogenetic relationships among cold-seep vesicomyid bivalves from the Gulf of Guinea and their western Atlantic and Pacific counterparts. PLoS One 7(4):e33359. doi:10.1371/journal.pone.0033359
11. Dubilier N, Bergin C, Lott C (2008) Symbiotic diversity in marine animals: the art of harnessing chemosynthesis. Nat Rev Microbiol 5:725-740
12. Duggen S, Hoernie K, van den Bogaard P, Rupke L, Phipps Morgan J (2003) Deep roots of the Messinian salinity crisis. Nature 422: 602-606 (Pubitemid 36460410)
13. Duperron S, Fiala-Medioni A, Caprais JC, Olu K, Sibuet M (2007) Evidence for chemoautotrophic symbiosis in a Mediterranean cold seep clam (Bivalvia-: Lucinidae): comparative sequence analysis of bacterial 16S rRNA, APS reductase and RubisCO genes. FEMS Microbiol Ecol 59:64-70 (Pubitemid 44952409)
14. Duperron S, Halary S, Lorion J, Sibuet M, Gaill F (2008) Unexpected co-occurrence of six bacterial symbionts in the gills of the cold seep mussel Idas sp. (Bivalvia: Mytilidae). Environ Microbiol 10 (2):433-445
15. Felsenstein J (1993) PHYLIP (phylogeny inference package) 3.57c edn. Department of Genetics, University of Washington, Seattle
16. Fisher CR (1990) Chemoautotrophic and methanotrophic symbioses in marine invertebrates. Rev Aquat Sci 2(3,4):399-436
17. Fujiwara Y, Kojima S, Mizota C, Maki Y, Fukikura K (2000) Phylogenetic characterization of the endosymbionts of the deepestliving vesicomyid clam, Calyptogena fossajaponica, from the Japan Trench. Venus Jap Jour Mal 59(4):307-316
18. Garcia-Merchan VH, Robainas-Barcia A, Abelló P, Macpherson E, Palero F, Garcia-Rodriguez M, Gil de Sola L, Pascual M (2012) Phylogeographic patterns of decapod crustaceans at the Atlantic- Mediterranean transition. Mol Phylogenet Evol 62:664-672
19. Goffredi SK, Hurtado LA, Hallam S, Vrijenhoek RC (2003) Evolutionary relationships of deep-sea vent and cold seep clams (Mollusca: Vesicomyidae) of the "pacifica/lepta" species complex. Mar Biol 142:311-320 (Pubitemid 36704494)
20. Hammer T, Harper DAT, Ryan PD (2001) PAST: paleontological statistics software package for education and data analysis. Palaeontol Electron 4:1-9
21. Harada M, Yoshida T, Kuwahara H, Shimamura S, Takaki Y, Kato C, Miwa T, Miyake H, Maruyama T (2009) Expression of genes for sulfur oxidation in the intracellular chemoautotrophic symbiont of the deep-sea bivalve Calyptogena okutanii. Extremophiles 13 (6):895-903
22. Hurtado LA, Mateos M, Lutz RA, Vrinjenhoek RC (2003) Coupling of bacterial endosymbiont and host mitochondrial genomes in the hydrothermal vent clam calyptogena magnifica. Appl Environ Microbiol 69(4):2058-2064 (Pubitemid 36443620)
23. Imhoff JF, Sahling H, Suling J, Kath T (2003) 16S rDNA-based phylogeny of sulphur-oxidising bacterial endosymbionts in marine bivalves from cold-seeps environments. Mar Ecol Prog Ser 249:39-51 (Pubitemid 36400138)
24. Kim Y, Yasuda M, Yamagishi A, Oshima T, Ohta S (1995) Characterization of the endosymbiont of a deep-sea bivalve Calyptogena soyoae. Appl Environ Microbiol 61(2):823-827
25. Kojima S, Kobayashi T, Hashimoto J, Ohta S (1995) RFLP analysis of a mitochondrial gene, Cytochrome Oxidase I (COI) of three species of the genus Calyptogena around Japan. J Oceanogr 51:257-259
26. Kojima S, Fujikura K, Okutani T (2004) Multiple trans-Pacific migrations of deep-sea vent/seep endemic bivalves in the family Vesicomyidae. Mol Phylogenet Evol 32:396-406 (Pubitemid 38851956)
27. Kojima S, Tsuchida E, Numanami H, Fujikura K, Okutani T (2006) Synonymy of Calyptogena solidissima with Calyptogena kawamurai (Bivalvia: Vesicimyidae) and its popularion structure revealed by mitochondrial DNA sequences. Zool Sci 23:835-842 (Pubitemid 46086025)
28. Krylova EM, Sahling H (2010) Vesicomyidae (Bivalvia): current taxonomy and distribution. PLoS One 5(4):e9957
29. Krylova EM, Gebruk AY, Portnova DA, Todt C, Haflidason H (2011) New species of the genus Isorropodon (Bivalvia: Vesicomyidae: Pliocardiinae) from cold methane seeps at Nyegga (Norwegian Sea, Voring Plateau, Storrega slide). J Mar Biol Assoc UK 91(5):1135-1144
30. Kuwahara H, Takaki Y, Yoshida T, Shimamura S, Takishita K, Reimer J, Kato C, Maruyama T (2008) Reductive genome evolution in chemoautotrophic intracellular symbionts of deep-sea Calyptogena clams. Extremophiles 12(3):365-374
31. Lane DJ (1991) 16S/(23S rRNA sequencing. In: Stakebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley, New York, pp 115-175
32. Meyer B, Kuever J (2007) Molecular analysis of the distribution and phylogeny of dissimilatory adenosine-59-phosphosulfate reductase- encoding genes (aprBA) among sulfuroxidizing prokaryotes. Microbiol 153:3478-3498 (Pubitemid 47629552)
33. Okutani T, Fujikura K, Kojima S (2000) New taxa and review of vesicomyid bivalves collcted from the northwest Pacific by deep-sea research systems of Japan Marine Science & Technology Center. Venus Jap Jour Mal 59:83-101
34. Oliver PG, Rodrigues CF, Cunha MR (2011) Chemosymbiotic bivalves from the mud volcanoes of the Gulf of Cadiz, NE Atlantic, with descriptions of new species of Solemyidae, Lucinidae and Vesicomyidae. Zookeys 113:1-38
35. Olu-Le Roy K, SibuetM, Fiala-Médioni A, Gofas S, Salas C,Mariotti A, Foucher JP, Woodside J (2004) Cold seep communities in the deep eastern Mediterranean Sea: composition, symbiosis and spatial distribution on mud volcanoes. Deep-Sea Res I 51:1915-1936 (Pubitemid 39533591)
36. Osborn M (2001) Molecular systematics of the vesicomyid clams: Calyptogena kilmeri and Vesicomya gigas. MBARI report. pp 7
37. Peek AS, Gustafson RG, Lutz RA, Vrijenhoek RC (1997) Evolutionary relationships of deep-sea hydrothermal vent and cold-water clams (Bivalvia: Vesicomyidae) results from the mitochondrial cytochrome oxidase subunit I. Mar Biol 130:151-161 (Pubitemid 28084446)
38. Peek AS, Feldman RA, Lutz RA, Vrijenhoek RC (1998) Cospeciation of chemoautotrophic bacteria and deep-sea clams. Proc Natl Acad Sci 95:9962-9966 (Pubitemid 28415277)
39. Peek AS, Gaut BS, Feldman RA, Barry JP, Kochevar RE, Lutz RA, Vrijenhoek RC (2000) Neutral and Nonneutral Mitochondrial Genetic Variation in Deep-Sea Clams from the Family Vesicomyidae. J Mol Evol 50 (2):141-153 (Pubitemid 30429990)
40. Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19(2):1572-1574 (Pubitemid 37038874)
41. Stewart FJ, Cavanaugh CM (2009) Pyrosequencing analysis of endosymbiont population structure: co-occurrence of divergent symbiont lineages in a single vesicomyid host clam. Environ Microbiol 11(8):2136-2147
42. Stewart FJ, Young CR, Cavanaugh CM (2008) Lateral symbiont acquisition in a maternally transmitted chemosynthetic clam endosymbiosis. Mol Biol Evol 25(4):673-687 (Pubitemid 351398323)
43. Stewart FJ, Young CR, Cavanaugh CM (2009) Evidence for homologous recombination in intracellular chemosynthetic clam. Mol Biol Evol 26(6):1391-1404
44. Sturany R (1896). Zoologische Ergebnisse VII. Mollusken I (Prosobranchier und Opisthobranchier; Scaphopoden; Lamellibranchier) gesammelt von S.M. Schiff "Pola" 1890-1894. Denkschriften der Kaiserlichen Akademie der Wissenschaften, Mathematische- Naturwissenschaftlischen Classe 63:1-36, pl.1-2
45. Taviani M (1994) The "calcari a Lucina" macrofauna reconsidered: deep-sea faunal oases from Miocene-age cold vents in the Romagna Apennine, Italy. Geo-Mar Lett 14:185-191
46. Thiele J, Jaeckel S (1931) Muscheln der Deutschen Tiefsee Expedition. Wissenschaftliche Ergebnisse der Deutschen Tiefsee Expedition 1898-1899 :159-268
47. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The Clustal X-Windows interface: flexible strategies for multiple sequence alignments aided by quality analysis tools. Nucleic Acids Res 25(24):4876-4882 (Pubitemid 28022245)
48. Zielinski FU, Pernthaler A, Duperron S, Raggi L, Giere O, Borowski C, Dubilier N (2009) Widespread occurrence of an intranuclear bacterial parasite in vent and seep bathymodiolin mussels. Environ Microbiol 11(5):1150-1167