-
2
-
-
0028864424
-
-
0076-6879 10.1016/S0076-6879(95)61018-9
-
M. Gueron and J. L. Leroy, Methods Enzymol. 0076-6879 10.1016/S0076-6879(95)61018-9 261, 383 (1995).
-
(1995)
Methods Enzymol.
, vol.261
, pp. 383
-
-
Gueron, M.1
Leroy, J.L.2
-
5
-
-
79960629703
-
-
PRLTAO 0031-9007 10.1103/PhysRevLett.106.238107
-
V. Ortiz and J. J. de Pablo, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.106.238107 106, 238107 (2011).
-
(2011)
Phys. Rev. Lett.
, vol.106
, pp. 238107
-
-
Ortiz, V.1
De Pablo, J.J.2
-
6
-
-
33847626738
-
A coarse grain model for DNA
-
DOI 10.1063/1.2431804
-
T. A. Knotts, N. Rathore, D. C. Schwartz, and J. J. de Pablo, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.2431804 126, 084901 (2007). (Pubitemid 46357459)
-
(2007)
Journal of Chemical Physics
, vol.126
, Issue.8
, pp. 084901
-
-
Knotts, T.A.1
Rathore, N.2
Schwartz, D.C.3
De Pablo, J.J.4
-
7
-
-
77951240891
-
-
NARHAD 0305-1048 10.1093/nar/gkp1084
-
B. S. Alexandrov, V. Gelev, S. W. Yoo, L. B. Alexandrov, Y. Fukuyo, A. R. Bishop, K. O. Rasmussen, and A. Usheva, Nucleic Acids Res. NARHAD 0305-1048 10.1093/nar/gkp1084 38, 1790 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 1790
-
-
Alexandrov, B.S.1
Gelev, V.2
Yoo, S.W.3
Alexandrov, L.B.4
Fukuyo, Y.5
Bishop, A.R.6
Rasmussen, K.O.7
Usheva, A.8
-
8
-
-
33750345805
-
Rational design of a super core promoter that enhances gene expression
-
DOI 10.1038/nmeth937, PII NMETH937
-
T. Juven-Gershon, S. Cheng, and J. T. Kadonaga, Nat. Methods NMAEA3 1548-7091 10.1038/nmeth937 3, 917 (2006). (Pubitemid 44614727)
-
(2006)
Nature Methods
, vol.3
, Issue.11
, pp. 917-922
-
-
Juven-Gershon, T.1
Cheng, S.2
Kadonaga, J.T.3
-
9
-
-
77952355398
-
-
JCTCCE 1549-9618 10.1021/ct900653p
-
P. D. Dans, A. Zeida, M. R. Machado, and S. Pantano, J. Chem. Theory Comput. JCTCCE 1549-9618 10.1021/ct900653p 6, 1711 (2010).
-
(2010)
J. Chem. Theory Comput.
, vol.6
, pp. 1711
-
-
Dans, P.D.1
Zeida, A.2
MacHado, M.R.3
Pantano, S.4
-
10
-
-
35949004903
-
-
PLEEE8 1539-3755 10.1103/PhysRevE.52.4217
-
F. Zhang and M. A. Collins, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.52.4217 52, 4217 (1995).
-
(1995)
Phys. Rev. e
, vol.52
, pp. 4217
-
-
Zhang, F.1
Collins, M.A.2
-
11
-
-
78651282789
-
-
1549-9618 10.1021/ct100379f
-
L. Darré, M. R. Machado, P. D. Dans, F. E. Herrera, and S. Pantano, J. Chem. Theory Comput. 1549-9618 10.1021/ct100379f 6, 3793 (2010).
-
(2010)
J. Chem. Theory Comput.
, vol.6
, pp. 3793
-
-
Darré, L.1
MacHado, M.R.2
Dans, P.D.3
Herrera, F.E.4
Pantano, S.5
-
12
-
-
84864596216
-
-
amber 10, University of California, San Francisco
-
D. A. Case, amber 10, University of California, San Francisco, 2008.
-
(2008)
-
-
Case, D.A.1
-
13
-
-
84952104504
-
-
MOPHAM 0026-8976 10.1080/00268978800101881
-
R. W. Pastor, B. R. Brooks, and A. Szabo, Mol. Phys. MOPHAM 0026-8976 10.1080/00268978800101881 65, 1409 (1988).
-
(1988)
Mol. Phys.
, vol.65
, pp. 1409
-
-
Pastor, R.W.1
Brooks, B.R.2
Szabo, A.3
-
14
-
-
0033468737
-
-
1432-881X 10.1007/s002140050460
-
J. Srinivasan, M. W. Trevathan, P. Beroza, and D. A. Case, Theor. Chem. Acc. 1432-881X 10.1007/s002140050460 101, 426 (1999).
-
(1999)
Theor. Chem. Acc.
, vol.101
, pp. 426
-
-
Srinivasan, J.1
Trevathan, M.W.2
Beroza, P.3
Case, D.A.4
-
15
-
-
76749133122
-
-
PRESCM 1539-3755 10.1103/PhysRevE.81.021906
-
O. C. Lee, J. H. Jeon, and W. Sung, Phys. Rev. E PRESCM 1539-3755 10.1103/PhysRevE.81.021906 81, 021906 (2010).
-
(2010)
Phys. Rev. e
, vol.81
, pp. 021906
-
-
Lee, O.C.1
Jeon, J.H.2
Sung, W.3
-
16
-
-
0030024985
-
-
SCIEAS 0036-8075 10.1126/science.271.5250.795
-
S. B. Smith, Y. Cui, and C. Bustamante, Science SCIEAS 0036-8075 10.1126/science.271.5250.795 271, 795 (1996).
-
(1996)
Science
, vol.271
, pp. 795
-
-
Smith, S.B.1
Cui, Y.2
Bustamante, C.3
-
17
-
-
70450261721
-
-
NARHAD 0305-1048 10.1093/nar/gkp608
-
R. Lavery, M. Moakher, J. H. Maddocks, D. Petkeviciute, and K. Zakrzewska, Nucleic Acids Res. NARHAD 0305-1048 10.1093/nar/gkp608 37, 5917 (2009).
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 5917
-
-
Lavery, R.1
Moakher, M.2
Maddocks, J.H.3
Petkeviciute, D.4
Zakrzewska, K.5
-
18
-
-
0023746243
-
-
ARBCEY 0084-6589 10.1146/annurev.bb.17.060188.001405
-
P. J. Hagerman, Annu. Rev. Biophys. Biophys. Chem. ARBCEY 0084-6589 10.1146/annurev.bb.17.060188.001405 17, 265 (1988).
-
(1988)
Annu. Rev. Biophys. Biophys. Chem.
, vol.17
, pp. 265
-
-
Hagerman, P.J.1
-
19
-
-
2342518189
-
Spontaneous sharp bending of double-stranded DNA
-
DOI 10.1016/S1097-2765(04)00210-2, PII S1097276504002102
-
T. E. Cloutier and J. Widom, Mol. Cell MOCEFL 1097-2765 10.1016/S1097-2765(04)00210-2 14, 355 (2004). (Pubitemid 38591406)
-
(2004)
Molecular Cell
, vol.14
, Issue.3
, pp. 355-362
-
-
Cloutier, T.E.1
Widom, J.2
-
20
-
-
19444387811
-
Bacterial repression loops require enhanced DNA flexibility
-
DOI 10.1016/j.jmb.2005.04.035, PII S0022283605004559
-
N. A. Becker, J. D. Kahn, and L. J. Maher III, J. Mol. Biol. JMOBAK 0022-2836 10.1016/j.jmb.2005.04.035 349, 716 (2005). (Pubitemid 40725950)
-
(2005)
Journal of Molecular Biology
, vol.349
, Issue.4
, pp. 716-730
-
-
Becker, N.A.1
Kahn, J.D.2
Maher III, L.J.3
-
21
-
-
40749090377
-
DNA bending stiffness on small length scales
-
DOI 10.1103/PhysRevLett.100.018102
-
C. Yuan, H. Chen, X. W. Lou, and L. A. Archer, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.100.018102 100, 018102 (2008). (Pubitemid 351388327)
-
(2008)
Physical Review Letters
, vol.100
, Issue.1
, pp. 018102
-
-
Yuan, C.1
Chen, H.2
Lou, X.W.3
Archer, L.A.4
-
22
-
-
33845810345
-
-
NNAABX 1748-3387 10.1038/nnano.2006.63
-
P. A. Wiggins, T. van der Heijden, F. Moreno-Herrero, A. Spakowitz, R. Phillips, J. Widom, C. Dekker, and P. C. Nelson, Nat. Nanotechnol. NNAABX 1748-3387 10.1038/nnano.2006.63 1, 137 (2006).
-
(2006)
Nat. Nanotechnol.
, vol.1
, pp. 137
-
-
Wiggins, P.A.1
Van Der Heijden, T.2
Moreno-Herrero, F.3
Spakowitz, A.4
Phillips, R.5
Widom, J.6
Dekker, C.7
Nelson, P.C.8
-
23
-
-
19544379865
-
-
PRLTAO 0031-9007 10.1103/PhysRevLett.93.108108
-
J. Yan and J. F. Marko, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.93.108108 93, 108108 (2004).
-
(2004)
Phys. Rev. Lett.
, vol.93
, pp. 108108
-
-
Yan, J.1
Marko, J.F.2
-
24
-
-
40249090005
-
Kinking the double helix by bending deformation
-
DOI 10.1093/nar/gkm1125
-
Q. Du, A. Kotlyar, and A. Vologodskii, Nucleic Acids Res. 0305-1048 10.1093/nar/gkm1125 36, 1120 (2008). (Pubitemid 351330930)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.4
, pp. 1120-1128
-
-
Du, Q.1
Kotlyar, A.2
Vologodskii, A.3
-
26
-
-
77952246173
-
-
BBMIC4 1471-2105 10.1186/1471-2105-11-262
-
T. Norambuena and F. Melo, BMC Bioinf. BBMIC4 1471-2105 10.1186/1471-2105-11-262 11, 262 (2010).
-
(2010)
BMC Bioinf.
, vol.11
, pp. 262
-
-
Norambuena, T.1
Melo, F.2
|