메뉴 건너뛰기




Volumn 86, Issue 2, 2012, Pages

Breathing, bubbling, and bending: DNA flexibility from multimicrosecond simulations

Author keywords

[No Author keywords available]

Indexed keywords

COARSE-GRAINED; DNA CURVATURE; DNA DOUBLE HELICES; DOUBLE HELIX; EXPERIMENTAL EVIDENCE; LIVING ORGANISMS; PHYSICAL PROCESS; PROTEIN DATA BANK; SPONTANEOUS FORMATION; THERMALLY INDUCED; THERMALLY INDUCED DISTORTIONS;

EID: 84864599207     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.86.021903     Document Type: Article
Times cited : (35)

References (27)
  • 2
    • 0028864424 scopus 로고
    • 0076-6879 10.1016/S0076-6879(95)61018-9
    • M. Gueron and J. L. Leroy, Methods Enzymol. 0076-6879 10.1016/S0076-6879(95)61018-9 261, 383 (1995).
    • (1995) Methods Enzymol. , vol.261 , pp. 383
    • Gueron, M.1    Leroy, J.L.2
  • 5
    • 79960629703 scopus 로고    scopus 로고
    • PRLTAO 0031-9007 10.1103/PhysRevLett.106.238107
    • V. Ortiz and J. J. de Pablo, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.106.238107 106, 238107 (2011).
    • (2011) Phys. Rev. Lett. , vol.106 , pp. 238107
    • Ortiz, V.1    De Pablo, J.J.2
  • 8
    • 33750345805 scopus 로고    scopus 로고
    • Rational design of a super core promoter that enhances gene expression
    • DOI 10.1038/nmeth937, PII NMETH937
    • T. Juven-Gershon, S. Cheng, and J. T. Kadonaga, Nat. Methods NMAEA3 1548-7091 10.1038/nmeth937 3, 917 (2006). (Pubitemid 44614727)
    • (2006) Nature Methods , vol.3 , Issue.11 , pp. 917-922
    • Juven-Gershon, T.1    Cheng, S.2    Kadonaga, J.T.3
  • 10
    • 35949004903 scopus 로고
    • PLEEE8 1539-3755 10.1103/PhysRevE.52.4217
    • F. Zhang and M. A. Collins, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.52.4217 52, 4217 (1995).
    • (1995) Phys. Rev. e , vol.52 , pp. 4217
    • Zhang, F.1    Collins, M.A.2
  • 12
    • 84864596216 scopus 로고    scopus 로고
    • amber 10, University of California, San Francisco
    • D. A. Case, amber 10, University of California, San Francisco, 2008.
    • (2008)
    • Case, D.A.1
  • 13
    • 84952104504 scopus 로고
    • MOPHAM 0026-8976 10.1080/00268978800101881
    • R. W. Pastor, B. R. Brooks, and A. Szabo, Mol. Phys. MOPHAM 0026-8976 10.1080/00268978800101881 65, 1409 (1988).
    • (1988) Mol. Phys. , vol.65 , pp. 1409
    • Pastor, R.W.1    Brooks, B.R.2    Szabo, A.3
  • 15
    • 76749133122 scopus 로고    scopus 로고
    • PRESCM 1539-3755 10.1103/PhysRevE.81.021906
    • O. C. Lee, J. H. Jeon, and W. Sung, Phys. Rev. E PRESCM 1539-3755 10.1103/PhysRevE.81.021906 81, 021906 (2010).
    • (2010) Phys. Rev. e , vol.81 , pp. 021906
    • Lee, O.C.1    Jeon, J.H.2    Sung, W.3
  • 16
    • 0030024985 scopus 로고    scopus 로고
    • SCIEAS 0036-8075 10.1126/science.271.5250.795
    • S. B. Smith, Y. Cui, and C. Bustamante, Science SCIEAS 0036-8075 10.1126/science.271.5250.795 271, 795 (1996).
    • (1996) Science , vol.271 , pp. 795
    • Smith, S.B.1    Cui, Y.2    Bustamante, C.3
  • 18
    • 0023746243 scopus 로고
    • ARBCEY 0084-6589 10.1146/annurev.bb.17.060188.001405
    • P. J. Hagerman, Annu. Rev. Biophys. Biophys. Chem. ARBCEY 0084-6589 10.1146/annurev.bb.17.060188.001405 17, 265 (1988).
    • (1988) Annu. Rev. Biophys. Biophys. Chem. , vol.17 , pp. 265
    • Hagerman, P.J.1
  • 19
    • 2342518189 scopus 로고    scopus 로고
    • Spontaneous sharp bending of double-stranded DNA
    • DOI 10.1016/S1097-2765(04)00210-2, PII S1097276504002102
    • T. E. Cloutier and J. Widom, Mol. Cell MOCEFL 1097-2765 10.1016/S1097-2765(04)00210-2 14, 355 (2004). (Pubitemid 38591406)
    • (2004) Molecular Cell , vol.14 , Issue.3 , pp. 355-362
    • Cloutier, T.E.1    Widom, J.2
  • 20
    • 19444387811 scopus 로고    scopus 로고
    • Bacterial repression loops require enhanced DNA flexibility
    • DOI 10.1016/j.jmb.2005.04.035, PII S0022283605004559
    • N. A. Becker, J. D. Kahn, and L. J. Maher III, J. Mol. Biol. JMOBAK 0022-2836 10.1016/j.jmb.2005.04.035 349, 716 (2005). (Pubitemid 40725950)
    • (2005) Journal of Molecular Biology , vol.349 , Issue.4 , pp. 716-730
    • Becker, N.A.1    Kahn, J.D.2    Maher III, L.J.3
  • 21
    • 40749090377 scopus 로고    scopus 로고
    • DNA bending stiffness on small length scales
    • DOI 10.1103/PhysRevLett.100.018102
    • C. Yuan, H. Chen, X. W. Lou, and L. A. Archer, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.100.018102 100, 018102 (2008). (Pubitemid 351388327)
    • (2008) Physical Review Letters , vol.100 , Issue.1 , pp. 018102
    • Yuan, C.1    Chen, H.2    Lou, X.W.3    Archer, L.A.4
  • 23
    • 19544379865 scopus 로고    scopus 로고
    • PRLTAO 0031-9007 10.1103/PhysRevLett.93.108108
    • J. Yan and J. F. Marko, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.93.108108 93, 108108 (2004).
    • (2004) Phys. Rev. Lett. , vol.93 , pp. 108108
    • Yan, J.1    Marko, J.F.2
  • 24
    • 40249090005 scopus 로고    scopus 로고
    • Kinking the double helix by bending deformation
    • DOI 10.1093/nar/gkm1125
    • Q. Du, A. Kotlyar, and A. Vologodskii, Nucleic Acids Res. 0305-1048 10.1093/nar/gkm1125 36, 1120 (2008). (Pubitemid 351330930)
    • (2008) Nucleic Acids Research , vol.36 , Issue.4 , pp. 1120-1128
    • Du, Q.1    Kotlyar, A.2    Vologodskii, A.3
  • 26
    • 77952246173 scopus 로고    scopus 로고
    • BBMIC4 1471-2105 10.1186/1471-2105-11-262
    • T. Norambuena and F. Melo, BMC Bioinf. BBMIC4 1471-2105 10.1186/1471-2105-11-262 11, 262 (2010).
    • (2010) BMC Bioinf. , vol.11 , pp. 262
    • Norambuena, T.1    Melo, F.2
  • 27


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.