Mis-assembled "segmental duplications" in two versions of the Bos taurus genome

PLoS ONE

Volumn 7, Issue 8, 2012, Pages

  Zimin, Aleksey V ^a   Kelley, David R ^a   Roberts, Michael ^a   Marçais, Guillaume ^a   Salzberg, Steven L ^b   Yorke, James A ^a  

^a Bldg 142   (United States)

^b JOHNS HOPKINS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BASE PAIRING; BOS TAURUS; CHROMOSOME DUPLICATION; FLUORESCENCE IN SITU HYBRIDIZATION; GENOME ANALYSIS; MAMMAL; NONHUMAN; VALIDITY;

ANIMALS; CATTLE; GENOME; HUMANS; REPRODUCIBILITY OF RESULTS; SEGMENTAL DUPLICATIONS, GENOMIC;

BOS TAURUS;

EID: 84864566633     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0042680     Document Type: Article

References (6)

1. She X, Jiang Z, Clark RA, Liu G, Cheng Z, et al. (2004) Shotgun sequence assembly and recent segmental duplications within the human genome. Nature 431: 930.
2. Tellam RL, Lemay DG, Van Tassell CP, Lewin HA, Worley KC, et al. (2009) Unlocking the bovine genome. BMC Genomics 24 (10): 193.
3. The Bovine Genome Sequencing and Analysis Consortium (BGSAC) (2009) The Genome Sequence of Taurine Cattle: a window to ruminant biology and evolution. Science 324: 522.
4. Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, et al. (2009) A whole-genome assembly of the domestic cow, Bos taurus. Genome Biology 10 (4): R42.
5. Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, et al. (2004) Versatile and open software for comparing large genomes. Genome Biology 5(2): R12.
6. Liu GE, Ventura M, Cellamare A, Chen L, Cheng Z, et al. (2009) Analysis of recent segmental duplications in the bovine genome. BMC Genomics 10: 571.