Genetic variations of Chinese melon landraces investigated with EST-SSR markers

Horticulture Environment and Biotechnology

Volumn 52, Issue 2, 2011, Pages 163-169

  Kong, Qiusheng ^a   Xiang, Changping ^a   Yang, Jin ^a   Yu, Zhongwei ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

cluster analysis; functional marker; genetic diversity; PIC; principle coordinate analysis

Indexed keywords

CUCUMIS;

EID: 84864436441     PISSN: 22113452     EISSN: 22113460     Source Type: Journal    
DOI: 10.1007/s13580-011-0087-7     Document Type: Article

References (27)

1. Andersen, J. R. and T. Lubberstedt. 2003. Functional markers in plants. Trends Plant Sci. 8: 554-560.
2. Anderson, J. A., G. A. Churchill, J. E. Autrique, S. D. Tanksley, and M. E. Sorrells. 1993. Optimizing parental selection for genetic linkage maps. Genome 36: 181-186.
3. Chabane, K., G. A. Ablett, G. M. Cordeiro, J. Valkoun, and R. J. Henry. 2005. EST versus genomic derived microsatellite markers for genotyping wild and cultivated barley. Genet. Resour. Crop Evol. 52: 903-909.
4. Chabane, K., R. Varshney, A. Graner, and J. Valkoun. 2008. Generationand exploitation of EST-derived SSR markers for assaying molecular diversity in durum wheat populations. Genet. Resour. Crop Evol. 55: 869-881.
5. Chiba, N., K. Suwabe, T. Nunome, and M. Hirai. 2003. Development of microsatellite markers in melon (Cucumis melo L.) and their application to major cucurbit crops. Breeding Sci. 53: 21-27.
6. Cordeiro, G. M, R. Casu, C. L. McIntyre, J. M. Manners, and R. J. Henry. 2001. Microsatellite markers from sugarcane (Saccharum spp.) ESTs cross transferable to erianthus and sorghum. Plant Sci. 160: 1115-1123.
7. Danin-Poleg, Y., N. Reis, G. Tzuri, and N. Katzir. 2001. Development and characterization of microsatellite markers in Cucumis. Theor. Appl. Genet. 102: 61-72.
8. Fukino, N., Y. Sakata, M. Kunihisa, and S. Matsumoto. 2007. Characterisation of novel simple sequence repeat (SSR) markers for melon (Cucumis melo L.) and their use for genotype identification. J. Hortic. Sci. Biotechnol. 82: 330-334.
9. Gonzalo, M. J., M. Oliver, J. Garcia-Mas, A. J. Monforte, R. Dolcet-Sanjuan, N. Katzir, P. Arus, and A. Monforte. 2005. Simple-sequence repeat markers used in merging linkage maps of melon (Cucumis melo L.). Theor. Appl. Genet. 110: 802-811.
10. Guo, W. Z., C. P. Cai, C. B. Wang, Z. G. Han, X. L. Song, K. Wang, X. W. Niu, C. Wang, K. Y. Lu, B. Shi, and T. Z. Zhang. 2007. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in gossypium. Genetics 176: 527-541.
11. Gupta, P. K., S. Rustgi, S. Sharma, R. Singh, N. Kumar, and H. S. Balyan. 2003. Transferable EST-SSR markers for the study of polymorphism and genetic diversity in bread wheat. Mol. Genet. Genomics 270: 315-323.
12. Katzir, N., Y. Danin-Poleg, G. Tzuri, Z. Karchi, U. Lavi, and P. B. Cregan. 1996. Length polymorphism and homologies of microsatellites in several Cucurbitaceae species. Theor. Appl. Genet. 93: 1282-1290.
13. Kong, Q., C. Xiang, Z. Yu, C. Zhang, F. Liu, C. Peng, and X. Peng. 2007. Mining and charactering microsatellites in Cucumis melo expressed sequence tags from sequence database. Mol. Ecol. Notes 7: 281-283.
14. Laurent, V., P. Devaux, T. Thiel, F. Viard, S. Mielordt, P. Touzet, and M. Quillet. 2007. Comparative effectiveness of sugar beet microsatellie markers isolated from genomic libraries and GenBank ESTs to map the sugar beet genome. Theor. Appl. Genet. 115: 793-805.
15. Luan, F., I. Delannay, and J. Staub. 2008. Chinese melon (Cucumis melo L.) diversity analyses provide strategies for germplasm curation, genetic improvement, and evidentiary support of domestication patterns. Euphytica 164: 445-461.
16. Metzgar, D., J. Bytof, and C. Wills. 2000. Selection against frameshift mutations limits microsatellite expansion in coding DNA. Genome Res. 10: 72-80.
17. Monforte, A. J., J. Garcia-Mas, P. Arus, and E. Minch. 2003. Genetic variability in melon based on microsatellite variation. Plant Breeding 122: 153-157.
18. Nakata, E., J. Staub, A. Lopez-Sese, and N. Katzir. 2005. Genetic diversity of Japanese melon cultivars (Cucumis melo L.) as assessed by random amplified polymorphic DNA and simple sequence repeat markers. Genet. Resour. Crop Evol. 52: 405-419.
19. Powell, W., G. C. Machray, and J. Provan. 1996. Polymorphism revealed by simple sequence repeats. Trends Plant Sci. 1: 215-222.
20. Ritschel, P. S., T. C. Lins, R. L. Tristan, G. S. Buso, J. A. Buso, and M. E. Ferreira. 2004. Development of microsatellite markers from an enriched genomic library for genetic analysis of melon (Cucumis melo L.). BMC Plant Biol. 4: 9.
21. Robinson, R. W. and D. S. Decker-Walters. 1997. Cucurbits. CAB International, New York, USA.
22. Sensoy, S., S. Buyukalaca, and K. Abak. 2007. Evaluation of genetic diversity in Turkish melons (Cucumis melo L.) based on phenotypic characters and RAPD markers. Genet. Resour. Crop Evol. 54: 1351-1365.
23. Staub, J. E., J. Bacher, and K. Poetter. 1996. Factors affecting the application of random amplified polymorphic DNAs in cucumber (Cucumis sativus L.). Hortic. Sci. 31: 262-266.
24. Szabó, Z., G. Gyulai, M. Humphreys, L. Horváth, A. Bittsánszky, R. Lágler, and L. Heszky. 2005. Genetic variation of melon (C. melo) compared to an extinct landrace from the Middle Ages (Hungary) I. rDNA, SSR and SNP analysis of 47 cultivars. Euphytica 146: 87-94.
25. Varshney, R. K., A. Graner, and M. E. Sorrells. 2005. Genic microsatellite markers in plants: features and applications. Trends in Biotechnol. 23: 48-55.
26. Yashiro, K., H. Iwata, Y. Akashi, K. O. Tomita, M. Kuzuya, Y. Tsumura, and K. Kato. 2005. Genetic relationship among East and South Asian melon (Cucumis melo L.) revealed by AFLP analysis. Breeding Sci. 55: 197-206.
27. Yi, G. B., J. M. Lee, S. Lee, D. Choi, and B. D. Kim. 2006. Exploitation of pepper EST-SSRs and an SSR-based linkage map. Theor. Appl. Genet. 114: 113-130.