Trichoderma biodiversity in China

Journal of Applied Genetics

Volumn 53, Issue 3, 2012, Pages 343-354

  Sun, Rui yan ^a,b   Liu, Zhi cheng ^a,b   Fu, Kehe ^a,b   Fan, Lili ^a,b   Chen, Jie ^a,b  

^a SHANGHAI JIAO TONG UNIVERSITY   (China)

^b AGRO ENVIRONMENTAL PROTECTION INSTITUTE   (China)

Author keywords

Biogeography; Molecular identification; Phylogenetic analysis; Trichoderma

Indexed keywords

ARTICLE; BIODIVERSITY; CHINA; FUNGAL STRAIN; HYPOCREA LIXII; HYPOCREA VIRENS; NONHUMAN; TRICHODERMA; TRICHODERMA ASPERELLUM; TRICHODERMA ATRIOVIRIDE; TRICHODERMA AUREOVRIRIDE; TRICHODERMA BREVICOMPACTUM; TRICHODERMA CITRIOVIRIDE; TRICHODERMA ERINACEUM; TRICHODERMA GAMSII; TRICHODERMA HAMATUM; TRICHODERMA INTRICATUM; TRICHODERMA KONINGII; TRICHODERMA KONINGIOPSIS; TRICHODERMA LONGIBRANCHIATUM; TRICHODERMA PLEUROTICOLA; TRICHODERMA REESEII; TRICHODERMA SINENSIS; TRICHODERMA SPIRALE; TRICHODERMA STROMATICUM; TRICHODERMA TOMENTOSUM; TRICHODERMA VELUTINUM; TRICHODERMA VERMIPILUM;

BIODIVERSITY; CHINA; GEOGRAPHIC MAPPING; PHYLOGENY; SPECIES SPECIFICITY; TRICHODERMA;

TRICHODERMA; TRICHODERMA ASPERELLUM; TRICHODERMA BREVICOMPACTUM; TRICHODERMA ERINACEUM; TRICHODERMA HAMATUM; TRICHODERMA KONINGIOPSIS; TRICHODERMA SINENSIS; TRICHODERMA SPIRALE; TRICHODERMA STROMATICUM; TRICHODERMA TOMENTOSUM; TRICHODERMA VELUTINUM; TRICHODERMA VIRIDE;

EID: 84864383568     PISSN: 12341983     EISSN: None     Source Type: Journal    
DOI: 10.1007/s13353-012-0093-1     Document Type: Article

References (64)

1. Bailey BA, Bae H, Strem MD, Roberts DP, Thomas SE, Crozier J, Samuels GJ, Choi I-Y, Holmes KA (2006) Fungal and plant gene expression during the colonization of cacao seedlings by endophytic isolates of four Trichoderma species. Planta 224: 1449-1464.
2. Bissett J, Szakacs G, Nolan CA, Druzhinina I, Kullnig-Gradinger C, Kubicek CP (2003) New species of Trichoderma from Asia. Can J Bot 81: 570-586.
3. Błaszczyk L, Popiel D, Chełkowski J, Koczyk G, Samuels GJ, Sobieralski K, Siwulski M (2011) Species diversity of Trichoderma in Poland. J Appl Genet 52: 233-243.
4. Carbone I, Kohn LM (1999) A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91: 553-556.
5. Chaverri P, Samuels G (2003) Hypocrea/Trichoderma (ascomycota, hypocreales, hypocreaceae): species with green ascospores: Centraalbureau voor Schimmelcultures, pp 1-36.
6. Chaverri P, Castlebury LA, Samuels GJ, Geiser DM (2003) Multilocus phylogenetic structure within the Trichoderma harzianum/Hypocrea lixii complex. Mol Phylogenet Evol 27: 302-313.
7. Chełkowski J, Golka L, Ste{ogonek}pień Ł (2003) Application of STS markers for leaf rust resistance genes in near-isogenic lines of spring wheat cv. Thatcher. J App Genet 44: 323-338.
8. Danielson R, Davey C (1973) The abundance of Trichoderma propagules and the distribution of species in forest soils. Soil Biol Biochem 5: 485-494.
9. Doohan FM, Parry DW, Jenkinson P, Nicholson P (1998) The use of species-specific PCR-based assays to analyse Fusarium ear blight of wheat. Plant Pathol 47: 197-205.
10. Druzhinina I, Kopchinskiy A (2004a) TrichoBLAST version 1. 0, Multiloci database of phylogenetic markers and similarity search. Published online by the International Subcommission on Trichoderma and Hypocrea Taxonomy (ISTH). Home page at: http://www. isth. info/tools/blast/index. php.
11. Druzhinina IS, Kopchinskiy AG (2004b) TrichoBLAST version 1. 0, Trichoderma oligonucleotide key. Published online by the International Subcommission on Trichoderma and Hypocrea Taxonomy (ISTH). Home page at: http://www. isth. info/tools/molkey/index. php.
12. Druzhinina IS, Kubicek CP (2005) Species concepts and biodiversity in Trichoderma and Hypocrea: from aggregate species to species clusters. J Zhejiang Univ Sci B 6: 100-112.
13. Druzhinina IS, Kopchinskiy AG, Komoń M, Bissett J, Szakacs G, Kubicek CP (2005) An oligonucleotide barcode for species identification in Trichoderma and Hypocrea. Fungal Genet Biol 42: 813-828.
14. Druzhinina IS, Kubicek CP, Komoń-Zelazowska M, Mulaw TB, Bissett J (2010) The Trichoderma harzianum demon: complex speciation history resulting in coexistence of hypothetical biological species, recent agamospecies and numerous relict lineages. BMC Evol Biol 10: 94.
15. Eck RV, Dayhoff MO (1966) Atlas of protein sequence and structure. National Biomedical Research Foundation, Silver Springs, MD.
16. Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32(5): 1792-1797.
17. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
18. Gams W, Bissett J (1998) Morphology and identification of Trichoderma. In: Kubicek CP, Hannan GE (eds) Trichoderma and Gliocladium, vol 1: basic biology, taxonomy and genetics. Taylor and Francis, London, pp 3-34.
19. Gao W, Baoju L, Sun J, Yanxia S (2007) Inderntificaotion of Trichoderma Speices from Contaminnated Substrate During Cultivation of Pleurotus ostreatus. Acta Edulis Fungi 14(3): 81-85.
20. Harman GE, Howell CR, Viterbo A, Chet I, Lorito M (2004) Trichoderma species-opportunistic, avirulent plant symbionts. Nat Rev Microbiol 2: 43-56.
21. He Z, Sun H, Gao Y (2008) Identification of Trichoderma Species on Mushrooms. J Hebei Normal Univ Sci Technol 22(4): 41-45.
22. He Z, Gao Z, Gao Y, Zhao B, Zhang X (2010a) ITS sequence of Trichoderma species in soil planted vegetables in the greenhouse and UP-PCR analysis on genetic diversity. Acta Phytophylacica Sinica 37(5): 459-465.
23. He Z, Gao Z, Hou D (2010b) Study on species of Trichoderma on edible fungi and conidiospore production on the edible fungi residue with cotton seed shell as fermentation medium. Jiangsu Agric Sci 3: 440-442.
24. Hermosa MR, Keck E, Chamorro I, Rubio B, Sanz L, Vizcaíno JA, Grondona I, Monte E (2004) Genetic diversity shown in Trichoderma biocontrol isolates. Mycol Res 108: 897-906.
25. Hill TCJ, Walsh KA, Harris JA, Moffett BF (2003) Using ecological diversity measures with bacterial communities. FEMS Microbiol Ecol 43: 1-11.
26. Hjeljord L, Tronsmo A (1998) Trichoderma and Gliocladium in biological control: an overview. In: Harman GE, Kubicek CP (eds) Trichoderma and Gliocladium, vol 2: enzymes, biological control and commercial application. Taylor and Francis, London, pp 131-151.
27. Hoyos-Carvajal L, Orduz S, Bissett J (2009) Genetic and metabolic biodiversity of Trichoderma from Colombia and adjacent neotropic regions. Fungal Genet Biol 46: 615-631.
28. Jia DC, Yu ZF, Qiao M, Zhang KQ (2009) A new Chinese record of the genus Trichoderma. Mycosystema 28(6): 860-862.
29. Klein D, Eveleigh DE (1998) Ecology of Trichoderma. In: Harman GE, Kubicek CP (eds) Trichoderma and Gliocladium, vol 1: basic biology, taxonomy and genetics. Taylor and Francis, London, pp 57-74.
30. Kubicek CP, Penttilä ME (1998) Regulation of production of plant polysaccharide degrading enzymes by Trichoderma. In: Harman GE, Kubicek CP (eds) Trichoderma and Gliocladium, vol 1: basic biology, taxonomy and genetics. Taylor and Francis, London, pp 49-71.
31. Kubicek CP, Bissett J, Druzhinina I, Kullnig-Gradinger C, Szakacs G (2003) Genetic and metabolic diversity of Trichoderma: a case study on South East Asian isolates. Fungal Genetics Biol 38: 310-319.
32. Kubicek CP, Komoń-Zelazowska M, Druzhinina IS (2008) Fungal genus Hypocrea/Trichoderma: from barcodes to biodiversity. J Zhejiang Univ Sci B 9(10): 753-763.
33. Kullnig-Gradinger CM, Szakacs G, Kubicek CP (2002) Phylogeny and evolution of the genus Trichoderma: a multigene approach. Mycol Res 106: 757-767.
34. Li G, Chen J, Liu T, Liu L (2010) Trichoderma koningiopsis: A New Chinese Record of the Genus Trichoderma. Microbiol China 37(11): 1663-1665.
35. Luo X, Wen C (2003) Studies on Eeology and Biological Control of Antagonisti Trichoderma spp. Against Phytophthora capsici in ya'an. Sichuan Agricultural University, ya'an Sichuan, China.
36. Migheli Q, Balmas V, Komoñ-Zelazowska M, Scherm B, Fiori S, Kopchinskiy AG, Kubicek CP, Druzhinina IS (2009) Soils of a Mediterranean hot spot of biodiversity and endemism (Sardinia, Tyrrhenian Islands) are inhabited by pan-European, invasive species of Hypocrea/Trichoderma. Environ Microbiol 11(1): 35-46.
37. Nei M, Kumar S (2000) Molecular evolution and phylogenetics. Oxford University Press, New York.
38. Pan Z, Fu J, Ma L, Wang H (2010) Diversity of Trichoderma spp. isolated from medicinal plant rhizosphere soils in Liaoning Province. J Zhejiang Univ Agric and Life Sci 36(4): 405-410.
39. Samuels GJ, Chaverri P, Farr DF, McCray EB (2009) Trichoderma online systematic mycology and microbiology laboratory home page at: http://ntars-gringov/taxadescriptions/keys/TrichodermaIndexcfm.
40. Samuels GJ, Dodd SL, Gams W, Castlebury LA (2002) Trichoderma species associated with the green mold epidemic of commercially grown Agaricus bisporus. Mycologia 94: 146-170.
41. Shao L, Shi Y, Guo L (2008) Trichoderma Species Isolated from Contaminated Mushrooms and Cultivation Substrste in the Beijing Region. Acta Edulis Fungi 15(1): 86-90.
42. Sivasithamparam K, Ghisalberti EL (1998) Secondary metabolism in Trichoderma and Gliocladium. In: Harman GE, Kubicek CP (eds) Trichoderma and Glicoladium, vol 1: basic biology, taxonomy and genetics. Taylor and Francis, London, pp 139-191.
43. Sun J, Duan Y-X, Lǚ G-Z (2006a) Morphological Identification of Trichoderma Species in Liaoning Province. J Fungal Res 4(2): 38-44.
44. Sun J, Duan X-X, Lǚ G-Z (2006b) Primary Research On the Diversity Resource of Trichoderma in Liaoning Province. J Anhui Agri Sci 34(17): 4193-4195, 4197.
45. Tai FL (1979) Sylloge fungorum sinicorum. Science Press, Academia Sinica, Peking, China.
46. Tamura K, Nei M, Kumar S (2004) Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci USA 101: 11030-11035.
47. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
48. Vargas Gil S, Pastor S, March GJ (2009) Quantitative isolation of biocontrol agents Trichoderma spp., Gliocladium spp. and Actinomycetes from soil with culture media. Microbiol Res 164(2): 196-205.
49. Wen C, Chen W, Tao J (1992) Distribution of Trichoderma spp. in the Cotton Soil and Their Biological Activities. Acta Phytopathologica Sinica 4: 306.
50. Wen C, Chen W, Tao J (1993) Studies on The Taxonomy of The Genus Trichoderma in Southwestern China. Acta Myeologlca Sinlea 12(2): 118-130.
51. White TJ, Bruns T, Lee S, Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Shinsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic, San Diego, pp 315-322.
52. Widden P, Scattolin V (1988) Competitive interactions and ecological strategies of Trichoderma species colonizing spruce litter. Mycologia 80: 795-803.
53. Wu X, Wu X, Hu F, He H, Xie B (2008) Identification of Trichoderma Species Associated with Cultivated Edible Fungi. J Agric Biotochnol 16(6): 1048-1055.
54. Wuczkowski M, Druzhinina I, Gherbawy Y, Klug B, Prillinger HJ, Kubicek CP (2003) Species pattern and genetic diversity of Trichoderma in a mid-European, primeval floodplain-Forest. Microbiol Res 158: 125-133.
55. Xia C, Chen Y (2009) Biodiversity Research of the Genus Trichoderma from Yunnan Province: Data from Morphology and ITS Sequence. Southwest Forestry University, China.
56. Yu H-l, Wei J-g, Su X-l (2010) Investigation on Trichoderma resources in forest soil of Northern Guangxi. Guangxi Agric Sci 41(7): 703-706.
57. Yu Z-F, Qiao M, Zhang Y, Zhang K-Q (2007) Two new species of Trichoderma from Yunnan, China. Antonie van Leeuwenhoek 92: 101-108.
58. Yuan Z-L, Chen Y-C, Zhang C-L, Lin F-C, Chen L-Q (2008) Trichoderma chlorosporum, a new record of endophytic fungl from Dendrobium in China. Mycosystema 27(4): 608-610.
59. Ze F, Qiao Y-M, Zhang Y, Zhang K-Q (2007) Two new species of Trichoderma from Yunnan, China. Antonie van Leeuwenhoek 92: 101-108.
60. Zhang C-L, Xu T (2004) Trichoderma species from China. J Zhejiang Univ Agric and Life Sci 30(4): 464.
61. Zhang C-L, Xu T (2005) Records of Trichoderma species from Hebei, Zhejiang, Yunnan and Tibet of China. Mycosystema 24(2): 184-192.
62. Zhang E, Zhou B, Yang L (1996) Ecological distribution of Trichoderma propagules in main vegetation soils of Yunnan. Chin J Appl Ecol 7: 78-82.
63. Zhang C-L, Druzhinina IS, Kubicek CP, Xu T (2005) Trichoderma biodiversity in China: Evidence for a North to South distribution of species in East Asia. FEMS Microbiol Lett 251: 251-257.
64. Zhao Z, Sun X, Yang R, Yang H, Lǚ G (2004) Diversity of Trichoderma in greenhouse soil. J Zhejiang Univ Agric and Life Sci 30(4): 467.