Selective breeding in fish and conservation of genetic resources for aquaculture

Reproduction in Domestic Animals

Volumn 47, Issue SUPPL.4, 2012, Pages 255-263

  Lind, C E ^a   Ponzoni, R W ^a   Nguyen, N H ^a   Khaw, H L ^a  

^a WORLDFISH   (Malaysia)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; AQUACULTURE; ARTICLE; BREEDING; ENVIRONMENTAL PROTECTION; FISH; GENETIC SELECTION; GENETIC VARIABILITY; GENETICS; METHODOLOGY; PHYSIOLOGY;

ANIMALS; AQUACULTURE; BREEDING; CONSERVATION OF NATURAL RESOURCES; FISHES; GENETIC VARIATION; SELECTION, GENETIC;

EID: 84864325100     PISSN: 09366768     EISSN: 14390531     Source Type: Journal    
DOI: 10.1111/j.1439-0531.2012.02084.x     Document Type: Article

References (91)

1. Abella TA, Palada MS, Newkirk GF, 1990: Within family selection for growth rate with rotation mating in Oreochromis niloticus. Proceedings of the 2nd Asian Fisheries Forum. Asian Fisheries Society, Manilla, Tokyo, Japan, 17-22 April 1989, pp. 515-518.
2. Allendorf FW, 1986: Genetic drift and the loss of alleles versus heterozygosity. Zoo Biol 5, 181-190.
3. Allendorf FW, Luikart G, 2007: Conservation and the Genetics of Populations. Blackwell Publishing, Oxford, UK.
4. Araki H, Schmid C, 2010: Is hatchery stocking a help or harm?: evidence, limitations and future directions in ecological and genetic surveys. Aquaculture 308(Supplement 1), S2-S11.
5. Avise JC, 1994: Molecular Markers, Natural History and Evolution. Chapman & Hall, New York, NY.
6. Bartley DM, Harvey BJ, Pullin RSV, 2007: Workshop on Status and Trends in Aquatic Genetic Resources: A Basis for International Policy, 8-10 May 2006. FAO Fisheries Proceedings No. 5. FAO, Rome, p. 179.
7. Bentsen HB, Oleson I, 2002: Designing aquaculture mass selection programs to avoid high inbreeding rates. Aquaculture 204, 349-359.
8. Benzie JAH, 2009: Use and exchange of genetic resources of penaeid shrimps for food and aquaculture. Rev Aquacult 1, 232-250.
9. Bolivar RB, Newkirk GF, 2000: Response to selection for body weight of Nile Tilapia (Oreochromis niloticus) in different culture environments. Proceedings of ISTA V, Rio de Janeiro, Brazil, September 3-7, 2000. pp. 12-23.
10. Bolivar RB, Newkirk GF, 2002: Response to within family selection for body weight in Nile tilapia (Oreochromis niloticus) using a single-trait animal model. Aquaculture 204, 371-381.
11. Bolivar RB, Bartolome ZP, Newkirk GF, 1994: Response to within-family selection for growth in Nile tilapia (Oreochromis niloticus). In: Chou LM, Munro AD, Lam TJ, Chen TW, Cheong LKK, Ding JK, Hooi KK, Khoo HW, Phang VPE, Shim KF, Tan CH (eds), The Third Asian Fisheries Forum. The Asian Fisheries Society, Manila, Philippines, p. 548.
12. Brown RC, Woolliams JA, McAndrew BJ, 2005: Factors influencing effective population size in commercial populations of gilthead seabream, Sparus aurata. Aquaculture 247, 219-225.
13. Brummett RE, Angoni DE, Pouomogne V, 2004: On-farm and on-station comparison of wild and domesticated Cameroonian populations of Oreochromis niloticus. Aquaculture 242, 157-164.
14. Burgman M, 2005: Risks and Decisions for Conservation and Environmental Management. Cambridge University Press, Cambridge, UK.
15. Cabrita E, Sarasquete C, Martinez-Paramo S, Robles V, Beirao J, Perez-Cerezales S, Herraez MP, 2010: Cryopreservation of fish sperm: applications and perspectives. J Appl Ichthyol 26, 623-635.
16. Camacho AS, Abella T, Tayamen MM, 2001: Fish genetics research and development in the Philippines. In: Gupta MV, Acosta BO (eds), Fish Genetics Research in Member Countries and Institutions of the International Network on Genetics in Aquaculture. ICLARM Conf. Proc. 64, Penang, Malaysia, pp. 71-76.
17. Cockerham CC, 1970: Avoidance and rate of inbreeding. In: Kojima K-I (ed.), Mathematical Topics in Population Genetics. Springer-Verlag, Berlin, Heidelberg, New York, pp. 104-127.
18. Cox LA, 2008: What's wrong with risk matrices? Risk Anal 28, 497-512.
19. Cox LAT, Babayev D, Huber W, 2005: Some limitations of qualitative risk rating systems. Risk Anal 25, 651-662.
20. D'Amato M, Esterhuyse M, van der Waal B, Brink D, Volckaert F, 2007: Hybridization and phylogeography of the Mozambique tilapia Oreochromis mossambicus in southern Africa evidenced by mitochondrial and microsatellite DNA genotyping. Conserv Genet 8, 475-488.
21. Darwall W, Smith K, Allen D, Holland R, Harrison I, Brooks E, 2011: The Diversity of Life in African Freshwaters: Underwater, Under Threat. An Analysis of the Status and Distribution of Freshwater Species Throughout Mainland Africa. IUCN, Cambridge, United Kingdom and Gland, Switzerland, p. 347.
22. Eknath AE, 1991: Simple Broodstock Management to Control Indirect Selection and Inbreeding: Indian Carp Example. NAGA, The ICLARM Quarterly 738, 13-14.
23. Eknath AE, Hulata G, 2009: Use and exchange of genetic resources of Nile tilapia (Oreochromis niloticus). Rev Aquac 1, 197-213.
24. Eknath AE, Dey MM, Rye M, Gjerde B, Abella TA, Sevilleja R, Tayamen MM, Reyes RA, Bentsen HB, 1998: Selective breeding of Nile tilapia for Asia. 6th World Congress on Genetics Applied to Livestock Production, Vol. 27. University of New England, Armidale, Australia, pp. 89-96.
25. Evans B, Bartlett J, Sweijd N, Cook P, Elliott NG, 2004: Loss of genetic variation at microsatellite loci in hatchery produced abalone in Australia (Haliotis rubra) and South Africa (Haliotis midae). Aquaculture 233, 109-127.
26. Falconer DS, Mackay TFC, 1996: Introduction to Quantitative Genetics, 4th edn. Longman Group, Essex, UK.
27. FAO, 2008: Aquaculture development. 5. Genetic resource management. Vol. FAO Technical Guidelines for Responsible Fishereis No. 5, Suppl. 3 FAO, Rome, p. 125.
28. Ferguson A, Taggart JB, Prodöhl PA, McMeel O, Thompson C, Stone C, McGinnity P, Hynes RA, 1995: The application of molecular markers to the study and conservation of fish populations, with special reference to Salmo. J Fish Biol 47, 103-126.
29. Fessehaye Y, El-Bialy Z, Rezk MA, Crooijmans R, Bovenhuis H, Komen H, 2006: Mating systems and male reproductive success in Nile tilapia (Oreochromis niloticus) in breeding hapas: a microsatellite analysis. Aquaculture 256, 148-158.
30. Fessehaye Y, Bovenhuis H, Rezk M, Ponzoni RW, Komen H, 2007: Mass spawning of Oreochromis niloticus for fry production: threats and opportunities selective breeding. In: van der Zijpp AJ, Verreth JAJ, Tri LQ, van Mensvoort MEF, Bosma RH, Beveridge MCM (eds), Fishponds in Farming Systems. Wageningen Academic Press, Wageningen, The Netherlands, pp. 37-48.
31. Franklin IR, Frankham R, 1998: How large must populations be to retain evolutionary potential? Anim Conserv 1, 69-70.
32. Frost LA, Evans BS, Jerry DR, 2006: Loss of genetic diversity due to hatchery culture practices in barramundi (Lates calcarifer). Aquaculture 261, 1056-1064.
33. Gallardo JA, Garcia X, Lhorente JP, Neira R, 2004: Inbreeding and inbreeding depression of female reproductive traits in two populations of Coho salmon selected using BLUP predictors of breeding values. Aquaculture 234, 111-122.
34. Gilmour AR, Gogel BJ, Cullis BR, Welham SJ, Thompson R, 2002: ASReml User Guide Release 1.0. VSN International Ltd, Hemel Hampstead, UK.
35. Gjedrem T, 2000: Genetic improvement of cold-water fish species. Aquac Res 31, 25-33.
36. Gjedrem T, 2010: The first family-based breeding program in aquaculture. Rev Aquac 2, 2-15.
37. Gjerde B, Gjoen HM, Villanueva B, 1996: Optimum designs for fish breeding programmes with constrained inbreeding. Mass selection for a normally distributed trait. Livest Prod Sci 47, 59-72.
38. Gozlan RE, 2008: Introduction of non-native freshwater fish: is it all bad? Fish Fish 9, 106-115.
39. Groeneveld E, 1990: PEST User's Manual. Dept of Animal Science, University of Illinois, USA: Urbana, Illinois.
40. Guo X, 2009: Use and exchange of genetic resources in molluscan aquaculture. Rev Aquac 1, 251-259.
41. Helfman GS, 2007: Fish Conservation: A Guide to Understanding and Restoring Global Aquatic Biodiversity and Fishery Resources. Island Press, Washington, DC.
42. Huang CM, Liao IC, 1990: Response to mass selection for growth rate in Oreochromis niloticus. Aquaculture 85, 199-205.
43. Hulata G, Wohlfarth GW, Halevy A, 1986: Mass selection for growth-rate in the Nile tilapia (Oreochromis niloticus). Aquaculture 57, 177-184.
44. Jeney Z, Jian Z, 2009: Use and exchange of aquatic resources relevant for food and aquaculture: common carp (Cyprinus carpio L.). Rev Aquac 1, 163-173.
45. Jonsson E, Johnsson JI, Bjornsson BT, 1998: Growth hormone increases aggressive behavior in juvenile rainbow trout. Horm Behav 33, 9-15.
46. Kapuscinski AR, Hayes KR, Li S, Dana G, 2007: Environmental Risk Assessment of Genetically Modified Organisms Vol 3: Methodologies for Transgenic Fish. CAB International, Cambridge, MA, USA, p. 304.
47. Kause A, Ritola O, Paananen T, Wahlroos H, Mantysaari EA, 2005: Genetic trends in growth, sexual maturity and skeletal deformations, and rate of inbreeding in a breeding programme for rainbow trout (Oncorhynchus mykiss). Aquaculture 247, 177-187.
48. Khaw HL, Ponzoni RW, Danting MJC, 2008: Estimation of genetic change in the GIFT strain of Nile tilapia (Oreochromis niloticus) by comparing contemporary progeny produced by males born in 1991 or in 2003. Aquaculture 275, 64-69.
49. Lind CE, Evans BS, Knauer J, Taylor JJU, Jerry DR, 2009: Decreased genetic diversity and a reduced effective population size in cultured silver-lipped pearl oysters (Pinctada maxima). Aquaculture 286, 12-19.
50. Lind CE, Brummett RE, Ponzoni RW, in press: Exploitation and conservation of fish genetic resources in Africa: issues and priorities for aquaculture development and research. Rev Aquacult doi 10.1111/j.1753-5131.2012.01068.x.
51. Linhart O, Rodina M, Cosson J, 2000: Cryopreservation of sperm in common carp Cyprinus carpio: sperm motility and hatching success of embryos. Cryobiology 41, 241-250.
52. Mair GC, Nam YK, Solar II, 2007: Risk management: reducing risk through confinement of transgenic fish. In: Kapuscinski AR, Hayes KR, Li S, Dana G (eds), Environmental Risk Assessment of Genetically Modified Organisms: Volume 3 Methodologies for Transgenic Fish. CAB International, Cambridge, USA, pp. 209-238.
53. Maluwa AO, Gjerde B, 2007: Response to selection for harvest body weight of Oreochromis shiranus. Aquaculture 273, 33-41.
54. McGinnity P, Stone C, Taggart JB, Cooke D, Cotter D, Hynes R, McCamley C, Cross T, Ferguson A, 1997: Genetic impact of escaped farmed Atlantic salmon (Salmo salar L.) on native populations: use of DNA profiling to assess freshwater performance of wild, farmed, and hybrid progeny in a natural river environment. ICES J Mar Sci 54, 998-1008.
55. McGinnity P, Prodöhl P, Ferguson A, Hynes R, Maoiléidigh NO, Baker N, Cotter D, O'Hea B, Cooke D, Rogan G, Taggart J, Cross T, 2003: Fitness reduction and potential extinction of wild populations of Atlantic salmon, Salmo salar, as a result of interactions with escaped farm salmon. Proc R Soc Lond B 270, 2443-2450.
56. McPhee CP, Jones CM, Shanks SA, 2004: Selection for increased weight at 9 months in redclaw crayfish (Cherax quadricarinatus). Aquaculture 237, 131-140.
57. Meuwissen T, 2007: Operation of conservation schemes. In: Oldenbreok K (ed.), Utilisation and Conservation of Farm Animal Genetic Resources. Wageningen Academic Publishers, Wageningen, The Netherlands, pp. 167-194.
58. Na-Nakorn U, Brummett RE, 2009: Use and exchange of aquatic genetic resources for food and aquaculture: Clarias catfish. Rev Aquac 1, 214-223.
59. Neira R, 2010: Breeding in Aquaculture Species: Genetic Improvement Programs in Developing Countries. 9th World Congress on Genetics Applied to Livestock Production. Leipzig, Germany. pp. 1-8.
60. Nguyen TTT, 2009: Patterns of use and exchange of genetic resources of the striped catfish Pangasianodon hypophthalmus (Sauvage 1878). Rev Aquac 1, 224-231.
61. Nguyen TTT, Davy FB, Rimmer MA, De Silva SS, 2009: Use and exchange of genetic resources of emerging species for aquaculture and other purposes. Rev Aquac 1, 260-274.
62. Nomura T, Yonezawa K, 1996: A comparison of four systems of group mating for avoiding inbreeding. Genet Sel Evol 28, 141-159.
63. Norris AT, Bradley DG, Cunningham EP, 1999: Microsatellite genetic variation between and within farmed and wild Atlantic salmon (Salmo salar) populations. Aquaculture 180, 247-264.
64. Olesen I, Myhr A, Rosendal GK, 2011: Sustainable aquaculture: are we getting there? Ethical perspectives on salmon farming. J Agric Environ Ethics 24, 381-408.
65. Ponzoni RW, Hamzah A, Tan S, Kamaruzzaman N, 2005: Genetic parameters and response to selection for live weight in the GIFT strain of Nile Tilapia (Oreochromis niloticus). Aquaculture 247, 203-210.
66. Ponzoni RW, Nguyen NH, Khaw HL, 2006: Importance and implementation of simple and advanced selective breeding programs for aquaculture species in developing countries. Proceedings of 8th World Congress on Genetics Applied to Livestock Production, Belo Horizonte, Brazil.
67. Ponzoni RW, Nguyen NH, Khaw HL, 2007: Investment appraisal of genetic improvement programs in Nile tilapia (Oreochromis niloticus). Aquaculture 269, 187-199.
68. Ponzoni RW, Nguyen NH, Khaw HL, Ninh NH, 2008: Accounting for genotype by environment interaction in economic appraisal of genetic improvement programs in common carp Cyprinus carpio. Aquaculture 285, 47-55.
69. Ponzoni RW, Nguyen NH, Khaw HL, 2009: Genetic improvement programs for aquaculture species in developing countries: prospects and challenges. Proceedings of the 18th conference of the Association for the Advancement of Animal Breeding and Genetics, 27 Sept - 3 Oct 2009, Australia.
70. Ponzoni RW, Khaw HL, Nguyen NH, Hamzah A, 2010: Inbreeding and effective population size in the Malaysian nucleus of the GIFT strain of Nile tilapia (Oreochromis niloticus). Aquaculture 302, 42-48.
71. Ponzoni RW, Nguyen NH, Khaw HL, 2011a: Fundamental considerations about design and sample size in strain comparisons and their implications. Aquac Res 42, 1855-1858.
72. Ponzoni RW, Nguyen NH, Khaw HL, Hamzah A, Bakar KRA, Yee HY, 2011b: Genetic improvement of Nile tilapia (Oreochromis niloticus) with special reference to the work conducted by the WorldFish Center with the GIFT strain. Rev Aquac 3, 27-41.
73. Pullin RSV, 2005: Conservation of Farmed Fish Genetic Resources: Broad Options, Strategies, Availability of Methods, and Comparisons with those for Conservation of the Genetic Resources of Other Farmed Animals. Procceedings of an International Workshop "Options and Strategies for the Conservation of Farm Animal Genetic Resources". FAO, Montpellier, France, pp. 87-103.
74. Reddy PVGK, Gjerde B, Mahapatra KD, Jana RK, Saha JN, Rye M, Meher PK, 1999: Selective Breeding Procedures for Asian Carps. Central Institute of Freshwater Aquaculture, Bhubanseswar, India.
75. Rhymer JM, Simberloff D, 1996: Extinction by hybridization and introgression. Annu Rev Ecol Syst 27, 83-109.
76. Senanan W, Kapuscinski AR, Na-Nakorn U, Miller LM, 2004: Genetic impacts of hybrid catfish farming (Clarias macrocephalus-C. gariepinus) on native catfish populations in central Thailand. Aquaculture 235, 167-184.
77. Shehzad A, 2009: Evaluation of Prevalence and Genetic Variation of Epicarditis and Heart Abnormalities in Farmed Atlantic salmon (Salmo salar). Masters Thesis. Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, Ås, Norway.
78. Silva SSD, Nguyen TTT, Turchini GM, Amarasinghe US, Abery NW, 2009: Alien species in aquaculture and biodiversity: a paradox in food production. Ambio 38, 24-28.
79. Smitherman RO, Khater AA, Cassell NI, Dunham RA, 1988: Reproductive performance of three strains of Oreochromis niloticus. Aquaculture 70, 29-37.
80. Solar II, 2009: Use and exchange of salmonid genetic resources relevant for food and aquaculture. Rev Aquac 1, 174-196.
81. Svasand T, Crosetti D, Garcia-Vazquez E, Verspoor E, 2007: Genetic impact of aquaculture activities on native populations. Genimpact final scientific report (EU contract n. RICA-CT-2005-022802), p. 176.
82. Teichert-Coddington DR, Smitherman RO, 1988: Lack of response by Tilapia nilotica to mass selection for rapid early growth. Trans Am Fish Soc 117, 297-300.
83. Thodesen J, Ponzoni RW, 2004: GIFT Technology Manual: An Aid to Tilapia Selective Breeding. WorldFish Center, Penang, Malaysia.
84. Uraiwan S, Doyle RW, 1986: Replicate variance and the choice of selection procedures for tilapia (Oreochromis niloticus) stock improvement in Thailand. Aquaculture 57, 93-98.
85. Van Vleck LD, 1993: Selection Index and Introduction to Mixed Model Methods. CRC Press Inc, Boca Raton, FL, USA.
86. Villanueva B, Wooliams JA, Gjerde B, 1996: Optimum designs for breeding programmes under mass selection with an application in fish breeding. Anim Sci 63, 563-576.
87. Vitule JRS, Freire CA, Simberloff D, 2009: Introduction of non-native freshwater fish can certainly be bad. Fish Fish 10, 98-108.
88. Viveiros ATM, So N, Komen J, 2000: Sperm cryopreservation of African catfish, Clarias gariepinus: cryoprotectants, freezing rates and sperm:egg dilution ratio. Theriogenology 54, 1395-1408.
89. Vrijenhoek RC, 1998: Conservation genetics of freshwater fish. J Fish Biol 53, 394-412.
90. Waples RS, Do C, 1994: Genetic risk associated with supplementation of Pacific samonids: captive broodstock programs. Can J Fish Aquat Sci 51, 310-329.
91. WorldFish Center, 2002: Nairobi Declaration: Conservation of Aquatic Biodiversity and use of Genetically Improved and Alien Species for Aquaculture in Africa. The WorldFish Center, Penang, Malaysia.