메뉴 건너뛰기




Volumn 424, Issue 2, 2012, Pages 331-337

Variations in the epigenetic regulation of lineage-specific genes among human pluripotent stem cell lines

Author keywords

Gene expression; Histone modification; Human embryonic stem cells; Induced pluripotent stem cells

Indexed keywords

HISTONE; NESTIN; OCTAMER TRANSCRIPTION FACTOR 4; TRANSCRIPTION FACTOR NANOG; TRANSCRIPTION FACTOR SOX2;

EID: 84864293059     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2012.06.122     Document Type: Article
Times cited : (8)

References (34)
  • 1
    • 33745865934 scopus 로고    scopus 로고
    • Chromatin in pluripotent embryonic stem cells and differentiation
    • Meshorer E., Misteli T. Chromatin in pluripotent embryonic stem cells and differentiation. Nat. Rev. Mol. Cell Biol. 2006, 7:540-546.
    • (2006) Nat. Rev. Mol. Cell Biol. , vol.7 , pp. 540-546
    • Meshorer, E.1    Misteli, T.2
  • 2
    • 36248966518 scopus 로고    scopus 로고
    • Induction of pluripotent stem cells from adult human fibroblasts by defined factors
    • Takahashi K., Tanabe K., Ohnuki M., et al. Induction of pluripotent stem cells from adult human fibroblasts by defined factors. Cell 2007, 131:861-872.
    • (2007) Cell , vol.131 , pp. 861-872
    • Takahashi, K.1    Tanabe, K.2    Ohnuki, M.3
  • 3
    • 63049090064 scopus 로고    scopus 로고
    • A fresh look at iPS cells
    • Yamanaka S. A fresh look at iPS cells. Cell 2009, 137:13-17.
    • (2009) Cell , vol.137 , pp. 13-17
    • Yamanaka, S.1
  • 4
    • 77956260872 scopus 로고    scopus 로고
    • Chromatin structure and gene expression programs of human embryonic and induced pluripotent stem cells
    • Guenther M.G., Frampton G.M., Soldner F., et al. Chromatin structure and gene expression programs of human embryonic and induced pluripotent stem cells. Cell Stem Cell 2010, 7:249-257.
    • (2010) Cell Stem Cell , vol.7 , pp. 249-257
    • Guenther, M.G.1    Frampton, G.M.2    Soldner, F.3
  • 5
    • 0035839136 scopus 로고    scopus 로고
    • Translating the histone code
    • Jenuwein T., Allis C.D. Translating the histone code. Science 2001, 293:1074-1080.
    • (2001) Science , vol.293 , pp. 1074-1080
    • Jenuwein, T.1    Allis, C.D.2
  • 6
    • 5444225805 scopus 로고    scopus 로고
    • Elongation by RNA polymerase II: the short and long of it
    • Sims R.J., Belotserkovskaya R., Reinberg D. Elongation by RNA polymerase II: the short and long of it. Genes Dev. 2004, 18:2437-2468.
    • (2004) Genes Dev. , vol.18 , pp. 2437-2468
    • Sims, R.J.1    Belotserkovskaya, R.2    Reinberg, D.3
  • 7
    • 0036850325 scopus 로고    scopus 로고
    • Cellular memory and the histone code
    • Turner B.M. Cellular memory and the histone code. Cell 2002, 111:285-291.
    • (2002) Cell , vol.111 , pp. 285-291
    • Turner, B.M.1
  • 8
    • 0037172993 scopus 로고    scopus 로고
    • Methylation of histone H3 Lys 4 in coding regions of active genes
    • Bernstein B.E., Humphrey E.L., Erlich R.L., et al. Methylation of histone H3 Lys 4 in coding regions of active genes. Proc. Natl. Acad. Sci. USA 2002, 99:8695-8700.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 8695-8700
    • Bernstein, B.E.1    Humphrey, E.L.2    Erlich, R.L.3
  • 9
    • 2442454683 scopus 로고    scopus 로고
    • Distinct localization of histone H3 acetylation and H3-K4 methylation to the transcription start sites in the human genome
    • Liang G., Lin J.C., Wei V., et al. Distinct localization of histone H3 acetylation and H3-K4 methylation to the transcription start sites in the human genome. Proc. Natl. Acad. Sci. USA 2004, 101:7357-7362.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 7357-7362
    • Liang, G.1    Lin, J.C.2    Wei, V.3
  • 10
    • 33646865180 scopus 로고    scopus 로고
    • Control of developmental regulators by Polycomb in human embryonic stem cells
    • Lee T.I., Jenner R.G., Boyer L.A., et al. Control of developmental regulators by Polycomb in human embryonic stem cells. Cell 2006, 125:301-313.
    • (2006) Cell , vol.125 , pp. 301-313
    • Lee, T.I.1    Jenner, R.G.2    Boyer, L.A.3
  • 11
    • 30044435641 scopus 로고    scopus 로고
    • Histone lysine methylation patterns in human cell types are arranged in distinct three-dimensional nuclear zones
    • Zinner R., Albiez H., Walter J., et al. Histone lysine methylation patterns in human cell types are arranged in distinct three-dimensional nuclear zones. Histochem. Cell Biol. 2006, 125:3-19.
    • (2006) Histochem. Cell Biol. , vol.125 , pp. 3-19
    • Zinner, R.1    Albiez, H.2    Walter, J.3
  • 12
    • 33646070846 scopus 로고    scopus 로고
    • A bivalent chromatin structure marks key developmental genes in embryonic stem cells
    • Bernstein B.E., Mikkelsen T.S., Xie X., et al. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 2006, 125:315-326.
    • (2006) Cell , vol.125 , pp. 315-326
    • Bernstein, B.E.1    Mikkelsen, T.S.2    Xie, X.3
  • 13
    • 34447098370 scopus 로고    scopus 로고
    • A chromatin landmark and transcription initiation at most promoters in human cells
    • Guenther M.G., Levine S.S., Boyer L.A., et al. A chromatin landmark and transcription initiation at most promoters in human cells. Cell 2007, 130:77-88.
    • (2007) Cell , vol.130 , pp. 77-88
    • Guenther, M.G.1    Levine, S.S.2    Boyer, L.A.3
  • 14
    • 78651066223 scopus 로고    scopus 로고
    • Epigenetic signatures and temporal expression of lineage-specific genes in hESCs during differentiation to hepatocytes in vitro
    • Kim H., Jang M.J., Kang M.J., et al. Epigenetic signatures and temporal expression of lineage-specific genes in hESCs during differentiation to hepatocytes in vitro. Hum. Mol. Genet. 2011, 20:401-412.
    • (2011) Hum. Mol. Genet. , vol.20 , pp. 401-412
    • Kim, H.1    Jang, M.J.2    Kang, M.J.3
  • 15
    • 70649095120 scopus 로고    scopus 로고
    • Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts
    • Doi A., Park I.H., Wen B., et al. Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts. Nat. Genet. 2009, 41:1350-1353.
    • (2009) Nat. Genet. , vol.41 , pp. 1350-1353
    • Doi, A.1    Park, I.H.2    Wen, B.3
  • 16
    • 77955449906 scopus 로고    scopus 로고
    • Epigenetic memory in induced pluripotent stem cells
    • Kim K., Doi A., Wen B., et al. Epigenetic memory in induced pluripotent stem cells. Nature 2010, 467:285-290.
    • (2010) Nature , vol.467 , pp. 285-290
    • Kim, K.1    Doi, A.2    Wen, B.3
  • 17
    • 79952264847 scopus 로고    scopus 로고
    • Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells
    • Lister R., Pelizzola M., Kida Y.S., et al. Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells. Nature 2011, 471:68-73.
    • (2011) Nature , vol.471 , pp. 68-73
    • Lister, R.1    Pelizzola, M.2    Kida, Y.S.3
  • 18
    • 85027958626 scopus 로고    scopus 로고
    • Incomplete DNA methylation underlies a transcriptional memory of somatic cells in human iPS cells
    • Ohi Y., Qin H., Hong C., et al. Incomplete DNA methylation underlies a transcriptional memory of somatic cells in human iPS cells. Nat. Cell Biol. 2011, 13:541-549.
    • (2011) Nat. Cell Biol. , vol.13 , pp. 541-549
    • Ohi, Y.1    Qin, H.2    Hong, C.3
  • 19
    • 67649222358 scopus 로고    scopus 로고
    • Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures
    • Chin M.H., Mason M.J., Xie W., et al. Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures. Cell Stem Cell 2009, 5:111-123.
    • (2009) Cell Stem Cell , vol.5 , pp. 111-123
    • Chin, M.H.1    Mason, M.J.2    Xie, W.3
  • 20
    • 70349445082 scopus 로고    scopus 로고
    • Transcriptional signature and memory retention of human-induced pluripotent stem cells
    • Marchetto M.C., Yeo G.W., Kainohana O., et al. Transcriptional signature and memory retention of human-induced pluripotent stem cells. PLoS One 2009, 4:e7076.
    • (2009) PLoS One , vol.4
    • Marchetto, M.C.1    Yeo, G.W.2    Kainohana, O.3
  • 21
    • 77957325592 scopus 로고    scopus 로고
    • Persistent donor cell gene expression among human induced pluripotent stem cells contributes to differences with human embryonic stem cells
    • Ghosh Z., Wilson K.D., Wu Y., et al. Persistent donor cell gene expression among human induced pluripotent stem cells contributes to differences with human embryonic stem cells. PLoS One 2010, 5:e8975.
    • (2010) PLoS One , vol.5
    • Ghosh, Z.1    Wilson, K.D.2    Wu, Y.3
  • 22
    • 78651469084 scopus 로고    scopus 로고
    • Evaluation of 28 human embryonic stem cell lines for use as unrelated donors in stem cell therapy: implications of HLA and ABO genotypes
    • Lee J.E., Kang M.S., Park M.H., et al. Evaluation of 28 human embryonic stem cell lines for use as unrelated donors in stem cell therapy: implications of HLA and ABO genotypes. Cell Transplant 2010, 19:1383-1395.
    • (2010) Cell Transplant , vol.19 , pp. 1383-1395
    • Lee, J.E.1    Kang, M.S.2    Park, M.H.3
  • 23
    • 78650450972 scopus 로고    scopus 로고
    • Efficient differentiation of human pluripotent stem cells into functional CD34+ progenitor cells by combined modulation of the MEK/ERK and BMP4 signaling pathways
    • Park S.W., Jun Koh Y., Jeon J., et al. Efficient differentiation of human pluripotent stem cells into functional CD34+ progenitor cells by combined modulation of the MEK/ERK and BMP4 signaling pathways. Blood 2010, 116:5762-5772.
    • (2010) Blood , vol.116 , pp. 5762-5772
    • Park, S.W.1    Jun Koh, Y.2    Jeon, J.3
  • 24
    • 33646872978 scopus 로고    scopus 로고
    • Chromatin signatures of pluripotent cell lines
    • Azuara V., Perry P., Sauer S., et al. Chromatin signatures of pluripotent cell lines. Nat. Cell Biol. 2006, 8:532-538.
    • (2006) Nat. Cell Biol. , vol.8 , pp. 532-538
    • Azuara, V.1    Perry, P.2    Sauer, S.3
  • 25
    • 34548434716 scopus 로고    scopus 로고
    • Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells
    • Pan G., Tian S., Nie J., et al. Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells. Cell Stem Cell 2007, 1:299-312.
    • (2007) Cell Stem Cell , vol.1 , pp. 299-312
    • Pan, G.1    Tian, S.2    Nie, J.3
  • 26
    • 34548424709 scopus 로고    scopus 로고
    • Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells
    • Zhao X.D., Han X., Chew J.L., et al. Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells. Cell Stem Cell 2007, 1:286-298.
    • (2007) Cell Stem Cell , vol.1 , pp. 286-298
    • Zhao, X.D.1    Han, X.2    Chew, J.L.3
  • 28
    • 29244438472 scopus 로고    scopus 로고
    • CpG-binding protein (CXXC finger protein 1) is a component of the mammalian Set1 histone H3-Lys4 methyltransferase complex, the analogue of the yeast Set1/COMPASS complex
    • Lee J.H., Skalnik D.G. CpG-binding protein (CXXC finger protein 1) is a component of the mammalian Set1 histone H3-Lys4 methyltransferase complex, the analogue of the yeast Set1/COMPASS complex. J. Biol. Chem. 2005, 280:41725-41731.
    • (2005) J. Biol. Chem. , vol.280 , pp. 41725-41731
    • Lee, J.H.1    Skalnik, D.G.2
  • 29
    • 0031949215 scopus 로고    scopus 로고
    • Rex-1, a gene encoding a transcription factor expressed in the early embryo, is regulated via Oct-3/4 and Oct-6 binding to an octamer site and a novel protein, Rox-1, binding to an adjacent site
    • Ben-Shushan E., Thompson J.R., Gudas L.J., et al. Rex-1, a gene encoding a transcription factor expressed in the early embryo, is regulated via Oct-3/4 and Oct-6 binding to an octamer site and a novel protein, Rox-1, binding to an adjacent site. Mol. Cell Biol. 1998, 18:1866-1878.
    • (1998) Mol. Cell Biol. , vol.18 , pp. 1866-1878
    • Ben-Shushan, E.1    Thompson, J.R.2    Gudas, L.J.3
  • 30
    • 0027273372 scopus 로고
    • An octamer motif contributes to the expression of the retinoic acid-regulated zinc finger gene Rex-1 (Zfp-42) in F9 teratocarcinoma cells
    • Hosler B.A., Rogers M.B., Kozak C.A., et al. An octamer motif contributes to the expression of the retinoic acid-regulated zinc finger gene Rex-1 (Zfp-42) in F9 teratocarcinoma cells. Mol. Cell Biol. 1993, 13:2919-2928.
    • (1993) Mol. Cell Biol. , vol.13 , pp. 2919-2928
    • Hosler, B.A.1    Rogers, M.B.2    Kozak, C.A.3
  • 31
    • 40749104852 scopus 로고    scopus 로고
    • An extended transcriptional network for pluripotency of embryonic stem cells
    • Kim J., Chu J., Shen X., et al. An extended transcriptional network for pluripotency of embryonic stem cells. Cell 2008, 132:1049-1061.
    • (2008) Cell , vol.132 , pp. 1049-1061
    • Kim, J.1    Chu, J.2    Shen, X.3
  • 32
    • 33747679358 scopus 로고    scopus 로고
    • Regulation of the pluripotency marker Rex-1 by Nanog and Sox2
    • Shi W., Wang H., Pan G., et al. Regulation of the pluripotency marker Rex-1 by Nanog and Sox2. J. Biol. Chem. 2006, 281:23319-23325.
    • (2006) J. Biol. Chem. , vol.281 , pp. 23319-23325
    • Shi, W.1    Wang, H.2    Pan, G.3
  • 33
    • 33747195353 scopus 로고    scopus 로고
    • Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
    • Takahashi K., Yamanaka S. Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell 2006, 126:663-676.
    • (2006) Cell , vol.126 , pp. 663-676
    • Takahashi, K.1    Yamanaka, S.2
  • 34
    • 34547624303 scopus 로고    scopus 로고
    • Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
    • Mikkelsen T.S., Ku M., Jaffe D.B., et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 2007, 448:553-560.
    • (2007) Nature , vol.448 , pp. 553-560
    • Mikkelsen, T.S.1    Ku, M.2    Jaffe, D.B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.