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Volumn 81, Issue 3, 2012, Pages 239-250

454-pyrosequencing of the transcriptome in leaf and flower buds of Japanese apricot (Prunus mume Sieb. et Zucc.) at different dormant stages

Author keywords

454 pyrosequencing; Database; Dormancy; EST; Japanese apricot

Indexed keywords

PRUNUS; PRUNUS ARMENIACA; PRUNUS MUME;

EID: 84864254596     PISSN: 18823351     EISSN: 1882336X     Source Type: Journal    
DOI: 10.2503/jjshs1.81.239     Document Type: Article
Times cited : (27)

References (37)
  • 3
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders, S. and W. Huber. 2010. Differential expression analysis for sequence count data. Genome Biol. 11: R106.
    • (2010) Genome Biol , vol.11
    • Anders, S.1    Huber, W.2
  • 4
    • 67649085779 scopus 로고    scopus 로고
    • Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection
    • Barakat, A., D. S. DiLoreto, Y. Zhang, C. Smith, K. Baier, W. A. Powell, N. Wheeler, R. Sederoff and J. E. Carlson. 2009. Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection. BMC Plant Biotech. 9: 51.
    • (2009) BMC Plant Biotech , vol.9 , pp. 51
    • Barakat, A.1    Diloreto, D.S.2    Zhang, Y.3    Smith, C.4    Baier, K.5    Powell, W.A.6    Wheeler, N.7    Sederoff, R.8    Carlson, J.E.9
  • 5
    • 71949094941 scopus 로고    scopus 로고
    • Combining nextgeneration pyrosequencing with microarray for large scale expression analysis in non-model species
    • Bellin, D., A. Ferrarini, A. Chimento, O. Kaiser, N. Levenkova, P. Bouffard and M. Delledonne. 2009. Combining nextgeneration pyrosequencing with microarray for large scale expression analysis in non-model species. BMC Genomics 10: 555.
    • (2009) BMC Genomics , vol.10 , pp. 555
    • Bellin, D.1    Ferrarini, A.2    Chimento, A.3    Kaiser, O.4    Levenkova, N.5    Bouffard, P.6    Delledonne, M.7
  • 6
    • 44049086018 scopus 로고    scopus 로고
    • Sequencing and annotation of the evergrowing locus in peach [Prunus persica (L.) Batsch] reveals a cluster of six MADS-box transcription factors as candidate genes for regulation of terminal bud formation
    • Bielenberg, D. G., Z. Li, T. Zhebentyayeva, S. Fan, G. L. Reighard, R. Scorza and A. G. Abbott. 2008. Sequencing and annotation of the evergrowing locus in peach [Prunus persica (L.) Batsch] reveals a cluster of six MADS-box transcription factors as candidate genes for regulation of terminal bud formation. Tree Genet. Gen. 4: 495-507.
    • (2008) Tree Genet. Gen , vol.4 , pp. 495-507
    • Bielenberg, D.G.1    Li, Z.2    Zhebentyayeva, T.3    Fan, S.4    Reighard, G.L.5    Scorza, R.6    Abbott, A.G.7
  • 8
    • 3042615882 scopus 로고    scopus 로고
    • Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs
    • Chevreux, B., T. Pfisterer, B. Drescher, A. J. Driesel, W. E. Müller, T. Wetter and S. Suhai. 2004. Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs. Genome Res. 14: 1147-1159.
    • (2004) Genome Res , vol.14 , pp. 1147-1159
    • Chevreux, B.1    Pfisterer, T.2    Drescher, B.3    Driesel, A.J.4    Müller, W.E.5    Wetter, T.6    Suhai, S.7
  • 10
    • 77950502897 scopus 로고    scopus 로고
    • Low temperatures impact dormancy status, flowering competence, and transcript profiles in crown buds of leafy spurge
    • Doǧramaci, M., D. P. Horvath, W. S. Chao, M. E. Foley, M. J. Christoffers and J. V. Anderson. 2010. Low temperatures impact dormancy status, flowering competence, and transcript profiles in crown buds of leafy spurge. Plant Mol. Biol. 73: 207-226.
    • (2010) Plant Mol. Biol , vol.73 , pp. 207-226
    • Doǧramaci, M.1    Horvath, D.P.2    Chao, W.S.3    Foley, M.E.4    Christoffers, M.J.5    Anderson, J.V.6
  • 11
    • 77949363090 scopus 로고    scopus 로고
    • Mapping quantitative trait loci associated with chilling requirement, heat requirement and bloom date in peach (Prunus persica)
    • Fan, S., D. G. Bielenberg, T. N. Zhebentyayeva, G. L. Reighard, W. R. Okie, D. Holland and A. G. Abbott. 2010. Mapping quantitative trait loci associated with chilling requirement, heat requirement and bloom date in peach (Prunus persica). New Phytol. 185: 917-930.
    • (2010) New Phytol , vol.185 , pp. 917-930
    • Fan, S.1    Bielenberg, D.G.2    Zhebentyayeva, T.N.3    Reighard, G.L.4    Okie, W.R.5    Holland, D.6    Abbott, A.G.7
  • 12
    • 79954580291 scopus 로고    scopus 로고
    • Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome
    • Fraser, B. A., C. J. Weadick, I. Janowitz, F. H. Rodd and K. A. Hughes. 2011. Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome. BMC Genomics 12: 202.
    • (2011) BMC Genomics , vol.12 , pp. 202
    • Fraser, B.A.1    Weadick, C.J.2    Janowitz, I.3    Rodd, F.H.4    Hughes, K.A.5
  • 16
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang, X. and A. Madan. 1999. CAP3: A DNA sequence assembly program. Genome Res. 9: 868-877.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 17
    • 0033290515 scopus 로고    scopus 로고
    • ESTScan: A program for detecting, evaluating, and reconstructing potential coding regions in EST sequences
    • Iseli, C., C. V. Jongeneel and P. Bucher. 1999. ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences. Proc. Int. Conf. Intell. Syst. Mol. Biol. 138-148.
    • (1999) Proc. Int. Conf. Intell. Syst. Mol. Biol , pp. 138-148
    • Iseli, C.1    Jongeneel, C.V.2    Bucher, P.3
  • 18
    • 77950502620 scopus 로고    scopus 로고
    • Gene expression of DAM5 and DAM6 is suppressed by chilling temperatures and inversely correlated with bud break rate
    • Jimenéz, S., G. L. Reighard and D. G. Bielenberg. 2010. Gene expression of DAM5 and DAM6 is suppressed by chilling temperatures and inversely correlated with bud break rate. Plant Mol. Biol. 73: 157-167.
    • (2010) Plant Mol. Biol , vol.73 , pp. 157-167
    • Jimenéz, S.1    Reighard, G.L.2    Bielenberg, D.G.3
  • 20
    • 79953812539 scopus 로고    scopus 로고
    • Novel aspects of transcriptional regulation in the winter survival and maintenance of poplar
    • Ko, J. H., C. Parassinos, D. Keathley and K-H. Han. 2011. Novel aspects of transcriptional regulation in the winter survival and maintenance of poplar. Tree Physiol. 31: 208-225.
    • (2011) Tree Physiol , vol.31 , pp. 208-225
    • Ko, J.H.1    Parassinos, C.2    Keathley, D.3    Han, K.-H.4
  • 21
    • 0000814181 scopus 로고
    • Dormancy-a new universal terminology
    • Lang, G. A. 1987. Dormancy-a new universal terminology. HortScience 22: 817-820.
    • (1987) HortScience , vol.22 , pp. 817-820
    • Lang, G.A.1
  • 23
    • 61349162295 scopus 로고    scopus 로고
    • Transcript profiling in Vitis riparia during chilling requirement fulfillment reveals coordination of gene expression patterns with optimized bud break
    • Mathiason, K., D. He, J. Grimplet, J. Venkateswari, D. W. Galbraith, E. Or and A. Fennell. 2009. Transcript profiling in Vitis riparia during chilling requirement fulfillment reveals coordination of gene expression patterns with optimized bud break. Funct. Integr. Genomics 9: 81-96.
    • (2009) Funct. Integr. Genomics , vol.9 , pp. 81-96
    • Mathiason, K.1    He, D.2    Grimplet, J.3    Venkateswari, J.4    Galbraith, D.W.5    Or, E.6    Fennell, A.7
  • 26
    • 84864217206 scopus 로고    scopus 로고
    • Development of flower buds during dormancy in Prunus species
    • (In Japanese)
    • Ooka, T., H. Jotatsu, R. Sasaki, H. Yamane, R. Tao and K. Yonemori. 2010. Development of flower buds during dormancy in Prunus species. Hort. Res. (Japan) 9 (Suppl. 1): 71 (In Japanese).
    • (2010) Hort. Res. (Japan) , vol.9 , Issue.SUPPL. 1 , pp. 71
    • Ooka, T.1    Jotatsu, H.2    Sasaki, R.3    Yamane, H.4    Tao, R.5    Yonemori, K.6
  • 28
    • 80052418917 scopus 로고    scopus 로고
    • Functional and expressional analyses of PmDAM genes associated with endodormancy in Japanese apricot (Prunus mume)
    • Sasaki, R., H. Yamane, T. Ooka, H. Jotatsu, Y. Kitamura, T. Akagi and R. Tao. 2011. Functional and expressional analyses of PmDAM genes associated with endodormancy in Japanese apricot (Prunus mume). Plant Physiol. 157: 485-497.
    • (2011) Plant Physiol , vol.157 , pp. 485-497
    • Sasaki, R.1    Yamane, H.2    Ooka, T.3    Jotatsu, H.4    Kitamura, Y.5    Akagi, T.6    Tao, R.7
  • 29
    • 52949091475 scopus 로고    scopus 로고
    • Influence of the current state of global warming on fruit tree growth in Japan
    • (In Japanese with English abstract)
    • Sugiura, T., H. Kuroda and H. Sugiura. 2007. Influence of the current state of global warming on fruit tree growth in Japan. Hort. Res. (Japan) 6: 257-263 (In Japanese with English abstract).
    • (2007) Hort. Res. (Japan) , vol.6 , pp. 257-263
    • Sugiura, T.1    Kuroda, H.2    Sugiura, H.3
  • 30
    • 1342290788 scopus 로고    scopus 로고
    • Impact of global warming on environments for apple and satsuma mandarin production estimated from changes of the annual mean temperature
    • (In Japanese with English abstract)
    • Sugiura, T. and M. Yokozawa. 2004. Impact of global warming on environments for apple and satsuma mandarin production estimated from changes of the annual mean temperature. J. Japan. Soc. Hort. Sci. 73: 72-78 (In Japanese with English abstract).
    • (2004) J. Japan. Soc. Hort. Sci , vol.73 , pp. 72-78
    • Sugiura, T.1    Yokozawa, M.2
  • 31
    • 0034069495 scopus 로고    scopus 로고
    • Gene Ontology: Tool for the unification of biology
    • The Gene Ontology Consortium
    • The Gene Ontology Consortium. 2000. Gene Ontology: tool for the unification of biology. Nature Genet. 25: 25-29.
    • (2000) Nature Genet , vol.25 , pp. 25-29
  • 32
    • 39049191101 scopus 로고    scopus 로고
    • Differential expression of dehydrin in flower buds of two Japanese apricot cultivars requiring different chilling requirements for bud break
    • Yamane, H., Y. Kashiwa, E. Kakehi, K. Yonemori, H. Mori, K. Hayashi, K. Iwamoto, R. Tao and I. Kataoka. 2006. Differential expression of dehydrin in flower buds of two Japanese apricot cultivars requiring different chilling requirements for bud break. Tree Physiol. 26: 1559-1563.
    • (2006) Tree Physiol , vol.26 , pp. 1559-1563
    • Yamane, H.1    Kashiwa, Y.2    Kakehi, E.3    Yonemori, K.4    Mori, H.5    Hayashi, K.6    Iwamoto, K.7    Tao, R.8    Kataoka, I.9
  • 33
    • 52949121079 scopus 로고    scopus 로고
    • Suppression subtractive hybridization and differential screening reveals endodormancy-associated expression of an SVP/AGL24-type MADS-box gene in lateral vegetative buds of Japanese apricot
    • Yamane, H., Y. Kashiwa, T. Ooka, R. Tao and K. Yonemori. 2008. Suppression subtractive hybridization and differential screening reveals endodormancy-associated expression of an SVP/AGL24-type MADS-box gene in lateral vegetative buds of Japanese apricot. J. Amer. Soc. Hort. Sci. 133: 708-716.
    • (2008) J. Amer. Soc. Hort. Sci , vol.133 , pp. 708-716
    • Yamane, H.1    Kashiwa, Y.2    Ooka, T.3    Tao, R.4    Yonemori, K.5
  • 34
    • 79960224143 scopus 로고    scopus 로고
    • Expressional regulation of PpDAM5 and PpDAM6, peach (Prunus persica) dormancy-associated MADS-box genes, by low temperature and dormant-breaking reagent treatment
    • Yamane, H., T. Ooka, H. Jotatsu, Y. Hosaka, R. Sasaki and R. Tao. 2011a. Expressional regulation of PpDAM5 and PpDAM6, peach (Prunus persica) dormancy-associated MADS-box genes, by low temperature and dormant-breaking reagent treatment. J. Exp. Bot. 62: 3481-3488.
    • (2011) J. Exp. Bot , vol.62 , pp. 3481-3488
    • Yamane, H.1    Ooka, T.2    Jotatsu, H.3    Hosaka, Y.4    Sasaki, R.5    Tao, R.6
  • 35
    • 79960431254 scopus 로고    scopus 로고
    • Expression analysis of PpDAM5 and PpDAM6 during flower bud development in peach (Prunus persica)
    • Yamane, H., T. Ooka, H. Jotatsu, R. Sasaki and R. Tao. 2011b. Expression analysis of PpDAM5 and PpDAM6 during flower bud development in peach (Prunus persica). Sci. Hortic. 129: 844-848.
    • (2011) Sci. Hortic , vol.129 , pp. 844-848
    • Yamane, H.1    Ooka, T.2    Jotatsu, H.3    Sasaki, R.4    Tao, R.5
  • 36
    • 79960851083 scopus 로고    scopus 로고
    • Comparative analyses of dormancyassociated MADS-box genes, PpDAM5 and PpDAM6, in lowand high-chill peaches (Prunus persica L.)
    • Yamane, H., R. Tao, T. Ooka, H. Jotatsu, R. Sasaki and K. Yonemori. 2011c. Comparative analyses of dormancyassociated MADS-box genes, PpDAM5 and PpDAM6, in lowand high-chill peaches (Prunus persica L.). J. Japan. Soc. Hort. Sci. 80: 276-283.
    • (2011) J. Japan. Soc. Hort. Sci , vol.80 , pp. 276-283
    • Yamane, H.1    Tao, R.2    Ooka, T.3    Jotatsu, H.4    Sasaki, R.5    Yonemori, K.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.