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Activating mutations in ALK provide a therapeutic target in neuroblastoma
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George, R. E.; Sanda, T.; Hanna, M.; Froehling, S.; Luther, W., II; Zhang, J.; Ahn, Y.; Zhou, W; London, W. B.; McGrady, P.; Xue, L.; Zozulya, S.; Gregor, V. E.; Webb, T. R.; Gray, N. S.; Gilliland, D. G.; Diller, L.; Greulich, H.; Morris, S. W.; Meyerson, M.; Look, A. Activating mutations in ALK provide a therapeutic target in neuroblastoma Nature 2008, 455, 975-978
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Fusion of a kinase gene, ALK, to a nucleolar protein gene, NPM, in non-Hodgkin's lymphoma
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Morris, S. W.; Kirstein, M. N.; Valentine, M. B.; Dittmer, K. G.; Shapiro, D. N.; Saltman, D. L.; Look, A. T. Fusion of a kinase gene, ALK, to a nucleolar protein gene, NPM, in non-Hodgkin's lymphoma Science 1994, 263, 1281-1284
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Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer
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references therein
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Soda, M.; Choi, Y. L.; Enomoto, M.; Takada, S.; Yamashita, Y.; Ishikawa, S.; Fujiwara, S.-I.; Watanabe, H.; Kurashina, K.; Hatanaka, H.; Bando, M.; Ohno, S.; Ishikawa, Y.; Aburatani, H.; Niki, T.; Sohara, Y.; Sugiyama, Y.; Mano, H. Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer Nature 2007, 448, 561-566 and references therein
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Soda, M.1
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Kurashina, K.9
Hatanaka, H.10
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Niki, T.15
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Crizotinib
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http://www.cancer.gov/cancertopics/druginfo/fda-crizotinib; see also Shaw, A. T.; Yasothan, U.; Kirkpatrick, P.; crizotinib. Nature Rev. Drug Discovery, 2011, 10 (12), 897-898, see also ref 9.
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Shaw, A.T.1
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Differential Inhibitor Sensitivity of Anaplastic Lymphoma Kinase Variants Found in Neuroblastoma
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DOI: 10.1126/scitranslmed.3002950
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Bresler, S. C.; Wood, A. C.; Haglund, E. A.; Courtright, J.; Belcastro, L. T.; Plegaria, J. S.; Cole, K.; Toporovskaya, Y.; Zhao, H.; Carpenter, E. L.; Christensen, J. G.; Maris, J. M.; Lemmon, M. A.; Mossé, Y. P. Differential Inhibitor Sensitivity of Anaplastic Lymphoma Kinase Variants Found in Neuroblastoma. Sci. Transl. Med. 2011, 108 (3), 108ra114, DOI: 10.1126/scitranslmed.3002950.
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Cole, K.7
Toporovskaya, Y.8
Zhao, H.9
Carpenter, E.L.10
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Maris, J.M.12
Lemmon, M.A.13
Mossé, Y.P.14
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78649475696
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The neuroblastoma-associated F1174L ALK mutation causes resistance to an ALK kinase inhibitor in ALK-translocated cancers
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See also Sasaki, T.; Okuda, K.; Zheng, W.; Butrynski, J.; Capelletti, M.; Wang, L.; Gray, N. S.; Wilner, K.; Christensen, J. G.; Demetri, G.; Shapiro, G. I.; Rodig, S. J.; Eck, M. J.; Jänne, P. A. The neuroblastoma-associated F1174L ALK mutation causes resistance to an ALK kinase inhibitor in ALK-translocated cancers Cancer Res. 2010, 70 (24) 10038-43
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Sasaki, T.1
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Wang, L.6
Gray, N.S.7
Wilner, K.8
Christensen, J.G.9
Demetri, G.10
Shapiro, G.I.11
Rodig, S.J.12
Eck, M.J.13
Jänne, P.A.14
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7
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78049426513
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EML4-ALK Mutations in Lung cancer that confer resistance to ALK inhibitors
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See also Choi, Y. L.; Soda, M.; Yamashita, Y.; Ueno, T.; Takashima, J.; Nakajima, T.; Yatabe, Y.; Takeuchi, K.; Hamada, T.; Haruta, H.; Ishikawa, Y.; Kimura, H.; Mitsudomi, T.; Tanio, Y.; Mano, H. EML4-ALK Mutations in Lung cancer that confer resistance to ALK inhibitors N. Engl. J. Med. 2010, 363 (18) 1734-1739
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Nakajima, T.6
Yatabe, Y.7
Takeuchi, K.8
Hamada, T.9
Haruta, H.10
Ishikawa, Y.11
Kimura, H.12
Mitsudomi, T.13
Tanio, Y.14
Mano, H.15
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8
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82555205478
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ALK Mutations Conferring Differential Resistance to Structurally Diverse ALK Inhibitors
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See also Heuckmann, J. M.; Hoelzel, M.; Sos, M. L.; Heynck, S.; Balke-Want, H.; Koker, M.; Peifer, M.; Weiss, J.; Lovly, C. M.; Gruetter, C.; Rauh, D.; Pao, W.; Thomas, R. K. ALK Mutations Conferring Differential Resistance to Structurally Diverse ALK Inhibitors Clin. Cancer Res. 2011, 17 (23) 7394-7401
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Heuckmann, J.M.1
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Sos, M.L.3
Heynck, S.4
Balke-Want, H.5
Koker, M.6
Peifer, M.7
Weiss, J.8
Lovly, C.M.9
Gruetter, C.10
Rauh, D.11
Pao, W.12
Thomas, R.K.13
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9
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84055211821
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Discovery of Potent and Highly Selective Thienopyridine Janus Kinase 2 Inhibitors
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13 and SRC are related in that they share a common downstream signaling pathway via Stat3. For details of the JAK kinase enzyme assays; see Laurie, B.; Schenkel, L. B.; Huang, X.; Cheng, A.; Deak, H. L.; Doherty, E.; Emkey, R.; Gu, Y.; Gunaydin, H.; Kim, J. L.; Lee, J.; Loberg, R.; Olivieri, P.; Pistillo, J.; Tang, J.; Wan, Q.; Wang, H.-L.; Wang, S.-W.; Wells, M. C.; Wu, B.; Yu, V.; Liu, L.; Geuns-Meyer, S. Discovery of Potent and Highly Selective Thienopyridine Janus Kinase 2 Inhibitors J. Med. Chem. 2011, 54 (24) 8440-8450
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Laurie, B.1
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Huang, X.3
Cheng, A.4
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Doherty, E.6
Emkey, R.7
Gu, Y.8
Gunaydin, H.9
Kim, J.L.10
Lee, J.11
Loberg, R.12
Olivieri, P.13
Pistillo, J.14
Tang, J.15
Wan, Q.16
Wang, H.-L.17
Wang, S.-W.18
Wells, M.C.19
Wu, B.20
Yu, V.21
Liu, L.22
Geuns-Meyer, S.23
more..
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10
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79951988430
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Comparison of 2 Cell-Based Phosphoprotein Assays to Support Screening and D evelopment of an ALK Inhibitor
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For details of the ALK kinase enzyme and cellular screens, see Drew, A. E.; Al-Assaad, S.; Yu, V.; Andrews, P.; Merkel, P.; Szilvassy, S.; Emkey, R.; Lewis, R.; Brake, R. L. Comparison of 2 Cell-Based Phosphoprotein Assays to Support Screening and D evelopment of an ALK Inhibitor J. Biomol. Screening 2011, 16 (2) 164-173 Details of the IGF1R and SRC enzyme assays and INSR cellular assay are reported in the Supporting Information.
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(2011)
J. Biomol. Screening
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Drew, A.E.1
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Szilvassy, S.6
Emkey, R.7
Lewis, R.8
Brake, R.L.9
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11
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80052806086
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Structure Based Drug Design of Crizotinib (PF-02341066), a Potent and Selective Dual Inhibitor of Mesenchymal-Epithelial Transition Factor (c-MET) Kinase and Anaplastic Lymphoma Kinase (ALK)
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Cui, J. J.; Tran-Dube, M.; Shen, H.; Nambu, M.; Kung, P.-P.; Pairish, M.; Jia, L.; Meng, J.; Funk, L.; Botrous, I.; McTigue, M.; Grodsky, N.; Ryan, K.; Padrique, E.; Alton, G.; Timofeevski, S.; Yamazaki, S.; Li, Q.; Zou, H.; Christensen, J.; Mroczkowski, B.; Bender, S.; Kania, R. S.; Edwards, M. P. Structure Based Drug Design of Crizotinib (PF-02341066), a Potent and Selective Dual Inhibitor of Mesenchymal-Epithelial Transition Factor (c-MET) Kinase and Anaplastic Lymphoma Kinase (ALK) J. Med. Chem. 2011, 54 (18) 6342-6363
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Meng, J.8
Funk, L.9
Botrous, I.10
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Grodsky, N.12
Ryan, K.13
Padrique, E.14
Alton, G.15
Timofeevski, S.16
Yamazaki, S.17
Li, Q.18
Zou, H.19
Christensen, J.20
Mroczkowski, B.21
Bender, S.22
Kania, R.S.23
Edwards, M.P.24
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12
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61349202340
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5-Aminomethylbenzimdazoles as potent ITK antagonists
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There is evidence of a close association between the benzimidazole nitrogen and the backbone carbonyl of Met1199 in all of the co-crystal structures that we have obtained for this class of ALK inhibitors. For compound 36 (Figure 3), the N-to-O distance is measured at 2.9 Å, which is consistent with an intermolecular hydrogen bond between these two centers. The interatomic distance between the benzoyl carbonyl oxygen of the inhibitor and the backbone NH of Met199 measures 3.0 Å in this structure. These interatomic distances are compatible with this class of compounds adopting an exocyclic acylimine tautomer, which is best able to satisfy the observed hydrogen-bonding pattern. Riether, D.; Zindell, R.; Kowalski, J. A.; Cook, B. N.; Bentzien, J.; De Lombaert, S.; Thomson, D.; Kugler, S. Z., Jr.; Skow, D.; Martin, L. S.; Raymond, E. L.; Khine, H H.; O'Shea, K.; Woska, J. R., Jr.; Jeanfavre, D.; Sellati, R.; Ralph, K. L. M.; Ahlberg, J.; Labissiere, G.; Kashem, M. A.; Pullen, S. S.; Takahashi, H. 5-Aminomethylbenzimdazoles as potent ITK antagonists Bioorg. Med. Chem. Lett. 2009, 19, 1588-1591
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Riether, D.1
Zindell, R.2
Kowalski, J.A.3
Cook, B.N.4
Bentzien, J.5
De Lombaert, S.6
Thomson, D.7
Kugler Jr., S.Z.8
Skow, D.9
Martin, L.S.10
Raymond, E.L.11
Khine, H.H.12
O'Shea, K.13
Woska Jr., J.R.14
Jeanfavre, D.15
Sellati, R.16
Ralph, K.L.M.17
Ahlberg, J.18
Labissiere, G.19
Kashem, M.A.20
Pullen, S.S.21
Takahashi, H.22
more..
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13
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58549089165
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Discovery of potent inhibitors of interleukin-2 inducible T-cell kinase (ITK) through structure-based drug design
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See also Cook, B. N.; Bentzien, J.; White, A.; Nemoto, P. A.; Wang, J.; Man, C. C.; Soleymanzadeh, F.; Khine, H. H.; Kashem, M. A.; Kugler, S. Z., Jr.; Wolak, J. P.; Roth, G. P.; De Lombaert, S.; Pullen, S. S.; Takahashi, H. Discovery of potent inhibitors of interleukin-2 inducible T-cell kinase (ITK) through structure-based drug design Bioorg. Med. Chem. Lett. 2009, 19, 773-777
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Cook, B.N.1
Bentzien, J.2
White, A.3
Nemoto, P.A.4
Wang, J.5
Man, C.C.6
Soleymanzadeh, F.7
Khine, H.H.8
Kashem, M.A.9
Kugler Jr., S.Z.10
Wolak, J.P.11
Roth, G.P.12
De Lombaert, S.13
Pullen, S.S.14
Takahashi, H.15
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14
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34250159880
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Hit-to-lead studies on benzimidazole inhibitors of ITK: Discovery of a novel class of kinase inhibitors
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For a discussion of acyliminobenzimidazole tautomerism, see Snow, R. J.; Abeywardane, A.; Campbell, S.; Lord, J.; Kashem, M. A.; Khine, H. H.; King, J.; Kowalski, J. A.; Pullen, S. S.; Roma, T.; Roth, G. P.; Sarko, C. R.; Wilson, N. S.; Winters, M. P.; Wolaka, J. P.; Cywin, C. L. Hit-to-lead studies on benzimidazole inhibitors of ITK: discovery of a novel class of kinase inhibitors Bioorg. Med. Chem. Lett. 2007, 17, 3660-3665
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Bioorg. Med. Chem. Lett.
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Snow, R.J.1
Abeywardane, A.2
Campbell, S.3
Lord, J.4
Kashem, M.A.5
Khine, H.H.6
King, J.7
Kowalski, J.A.8
Pullen, S.S.9
Roma, T.10
Roth, G.P.11
Sarko, C.R.12
Wilson, N.S.13
Winters, M.P.14
Wolaka, J.P.15
Cywin, C.L.16
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15
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33845231575
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Crystal Structures of IRAK-4 Kinase in Complex with Inhibitors: A Serine/Threonine Kinase with Tyrosine as a Gatekeeper
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See also Wang, Z.; Liu, J.; Sudom, S.; Ayres, M.; Li, S.; Wesche, H.; Powers, J. P.; Walker, N. P. C. Crystal Structures of IRAK-4 Kinase in Complex with Inhibitors: A Serine/Threonine Kinase with Tyrosine as a Gatekeeper Structure 2006, 14, 1835-1844
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(2006)
Structure
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Wang, Z.1
Liu, J.2
Sudom, S.3
Ayres, M.4
Li, S.5
Wesche, H.6
Powers, J.P.7
Walker, N.P.C.8
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84864275018
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PCT Int. Appl. WO 2012018668
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Bode, C. M.; Cheng, A. C.; Choquette, D.; Lewis, Richard, T.; Potashman, M. H.; Romero, K.; Stellwagen, J. C.; Whittington, D. A. Benzimidazole and azabenzimidazole compounds that inhibit anaplastic lymphoma kinase. PCT Int. Appl. WO 2012018668, 2012.
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(2012)
Benzimidazole and Azabenzimidazole Compounds That Inhibit Anaplastic Lymphoma Kinase
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Bode, C.M.1
Cheng, A.C.2
Choquette, D.3
Lewis Richard, T.4
Potashman, M.H.5
Romero, K.6
Stellwagen, J.C.7
Whittington, D.A.8
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17
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84864275017
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Screen was performed by KINOMEscan, a division of DiscoveRx, 11180 Roselle Street, San Diego. CA 92121 USA
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Screen was performed by KINOMEscan, a division of DiscoveRx, 11180 Roselle Street, San Diego. CA 92121 USA; http://kinomescan.com/.
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18
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84864187114
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Screen was performed by Carna Biosciences
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Screen was performed by Carna Biosciences. https://www.carnabio.com/ english/product/search.cgi?mode=profiling.
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19
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84864275016
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Details of additional studies will be reported elsewhere. In March 2011, Tesaro, Inc. signed an agreement with Amgen granting Tesaro exclusive worldwide rights for the development, manufacture, commercialization, and distribution of small molecule inhibitors of ALK. For more information, please contact Dr. Mary Lynne Hedley MLHedley@tesarobio.com
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Details of additional studies will be reported elsewhere. In March 2011, Tesaro, Inc. signed an agreement with Amgen granting Tesaro exclusive worldwide rights for the development, manufacture, commercialization, and distribution of small molecule inhibitors of ALK. For more information, please contact Dr. Mary Lynne Hedley: MLHedley@tesarobio.com
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84864228972
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WO 2010/057121
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Allen, J. R.; Bourbeau, M. P.; Chen, N.; He, E.; Kunz, R.; Rumfelt, S. Pyrazine compounds as phosphodiesterase 10 inhibitors and their preparation and use in the treatment of diseases. WO 2010/057121, 2010.
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(2010)
Pyrazine Compounds As Phosphodiesterase 10 Inhibitors and Their Preparation and Use in the Treatment of Diseases
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Allen, J.R.1
Bourbeau, M.P.2
Chen, N.3
He, E.4
Kunz, R.5
Rumfelt, S.6
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21
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84864264704
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U.S. Patent US 2010/0160280
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Allen, J. R.; Chen, N.; Falsey, J. R.; Frohn, M.; Harrington, P.; He, E.; Kaller, M. R.; Kunz, R.; Mercede, S. J.; Nguyen, T. T.; Pickrell, A. J.; Reichelt, A.; Rumfelt, S.; Rzasa, R. M.; Sham, K.; Siegmund, A. C.; Tegley, C. M.; Yao, G. Aminopyridine and carboxypyridine compounds as phosphodiesterase 10 inhibitors. U.S. Patent US 2010/0160280, 2010.
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(2010)
Aminopyridine and Carboxypyridine Compounds As Phosphodiesterase 10 Inhibitors
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Allen, J.R.1
Chen, N.2
Falsey, J.R.3
Frohn, M.4
Harrington, P.5
He, E.6
Kaller, M.R.7
Kunz, R.8
Mercede, S.J.9
Nguyen, T.T.10
Pickrell, A.J.11
Reichelt, A.12
Rumfelt, S.13
Rzasa, R.M.14
Sham, K.15
Siegmund, A.C.16
Tegley, C.M.17
Yao, G.18
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22
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84864235494
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WO 2010/138589
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Castanedo, G.; Chan, B.; Goldstein, D. M.; Kondru, R. K.; Lucas, M. C.; Palmer, W. S.; Price, S.; Safina, B.; Savy, P. P. A.; Seward, E. M.; Sutherlin, D. P.; Sweeney, Z. K. Preparation of bicyclic pyrimidines as selective inhibitors of the p110 delta isoform of PI3K for treating inflammation, immune diseases, and cancers. WO 2010/138589, 2010.
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(2010)
Preparation of Bicyclic Pyrimidines As Selective Inhibitors of the p110 Delta Isoform of PI3K for Treating Inflammation, Immune Diseases, and Cancers
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Castanedo, G.1
Chan, B.2
Goldstein, D.M.3
Kondru, R.K.4
Lucas, M.C.5
Palmer, W.S.6
Price, S.7
Safina, B.8
Savy, P.P.A.9
Seward, E.M.10
Sutherlin, D.P.11
Sweeney, Z.K.12
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