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Volumn 20, Issue 8, 2012, Pages 890-896

Permutation-based approaches do not adequately allow for linkage disequilibrium in gene-wide multi-locus association analysis

Author keywords

correlated tests; gene wide analysis; GWAS

Indexed keywords

ARTICLE; CONTROLLED STUDY; DATA ANALYSIS; GENE LINKAGE DISEQUILIBRIUM; GENETIC ASSOCIATION; GENETIC MARKER; HUMAN; MULTILOCUS SEQUENCE TYPING; PERMUTATION TEST; PRIORITY JOURNAL; SAMPLING ERROR; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICAL ANALYSIS;

EID: 84864152039     PISSN: 10184813     EISSN: 14765438     Source Type: Journal    
DOI: 10.1038/ejhg.2012.8     Document Type: Article
Times cited : (18)

References (23)
  • 3
    • 84969213492 scopus 로고    scopus 로고
    • Wellcome trust case control consortium: Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
    • Wellcome Trust Case Control Consortium: Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature 2007; 447: 661-678.
    • (2007) Nature , vol.447 , pp. 661-678
  • 4
    • 78049337953 scopus 로고    scopus 로고
    • Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index
    • Speliotes EK, Willer CJ, Berndt SI et al: Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index. Nat Genet 2010; 42: 937-948.
    • (2010) Nat Genet , vol.42 , pp. 937-948
    • Speliotes, E.K.1    Willer, C.J.2    Berndt, S.I.3
  • 5
    • 77957947562 scopus 로고    scopus 로고
    • Hundreds of variants clustered in genomic loci and biological pathways affect human height
    • Lango Allen H, Estrada K, Lettre G et al: Hundreds of variants clustered in genomic loci and biological pathways affect human height. Nature 2010; 467: 832-838.
    • (2010) Nature , vol.467 , pp. 832-838
    • Lango Allen, H.1    Estrada, K.2    Lettre, G.3
  • 6
    • 79953209030 scopus 로고    scopus 로고
    • Corrigendum: Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis
    • Voight BF, Scott LJ, Steinthorsdottir V et al: Corrigendum: twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. Nat Genet 2011; 43: 388.
    • (2011) Nat Genet , vol.43 , pp. 388
    • Voight, B.F.1    Scott, L.J.2    Steinthorsdottir, V.3
  • 7
    • 68449086236 scopus 로고    scopus 로고
    • Common polygenic variation contributes to risk of schizophrenia and bipolar disorder
    • International Schizophrenia Consortium
    • International Schizophrenia Consortium, Purcell SM, Wray NR et al: Common polygenic variation contributes to risk of schizophrenia and bipolar disorder. Nature 2009; 460: 748-752.
    • (2009) Nature , vol.460 , pp. 748-752
    • Purcell, S.M.1    Wray, N.R.2
  • 8
    • 79952489475 scopus 로고    scopus 로고
    • Estimating missing heritability for disease from genome-wide association studies
    • Lee SH, Wray NR, Goddard ME, Visscher PM: Estimating missing heritability for disease from genome-wide association studies. Am J Hum Genet 2011; 88: 294-305.
    • (2011) Am J Hum Genet , vol.88 , pp. 294-305
    • Lee, S.H.1    Wray, N.R.2    Goddard, M.E.3    Visscher, P.M.4
  • 9
    • 4143134235 scopus 로고    scopus 로고
    • The future of association studies: Gene-based analysis and replication
    • DOI 10.1086/423901
    • Neale BM, Sham PC: The future of association studies: gene-based analysis and replication. Am J Hum Genet 2004; 75: 353-362. (Pubitemid 39095812)
    • (2004) American Journal of Human Genetics , vol.75 , Issue.3 , pp. 353-362
    • Neale, B.M.1    Sham, P.C.2
  • 10
    • 60549085927 scopus 로고    scopus 로고
    • Gene-wide analyses of genome-wide association datasets: Evidence for multiple common risk alleles for schizophrenia and bipolar disorder and for overlap in genetic risk
    • Moskvina V, Craddock N, Holmans P et al: Gene-wide analyses of genome-wide association datasets: evidence for multiple common risk alleles for schizophrenia and bipolar disorder and for overlap in genetic risk. Mol Psych 2009; 14: 252-260.
    • (2009) Mol Psych , vol.14 , pp. 252-260
    • Moskvina, V.1    Craddock, N.2    Holmans, P.3
  • 11
    • 67649584052 scopus 로고    scopus 로고
    • Gene ontology analysis of GWA study data sets provides insights into the biology of bipolar disorder
    • Holmans P, Green EK, Pahwa JS et al: Gene ontology analysis of GWA study data sets provides insights into the biology of bipolar disorder. Am J Hum Genet 2009; 85: 13-24.
    • (2009) Am J Hum Genet , vol.85 , pp. 13-24
    • Holmans, P.1    Green, E.K.2    Pahwa, J.S.3
  • 12
    • 36249029788 scopus 로고    scopus 로고
    • Pathway-based approaches for analysis of genomewide association studies
    • DOI 10.1086/522374
    • Wang K, Li M, Bucan M: Pathway-based approaches for analysis of genomewide association studies. Am J Hum Genet 2007; 81: 1278-1283. (Pubitemid 350211456)
    • (2007) American Journal of Human Genetics , vol.81 , Issue.6 , pp. 1278-1283
    • Wang, K.1    Li, M.2    Bucan, M.3
  • 13
    • 78649573450 scopus 로고    scopus 로고
    • Genetic evidence implicates the immune system and cholesterol metabolism in the aetiology of alzheimer's disease
    • Jones L, Holmans PA, Hamshere ML et al: Genetic evidence implicates the immune system and cholesterol metabolism in the aetiology of Alzheimer's disease. PLoS ONE 2010; 5: e13950.
    • (2010) PLoS ONE , vol.5
    • Jones, L.1    Holmans, P.A.2    Hamshere, M.L.3
  • 15
    • 0344826563 scopus 로고    scopus 로고
    • Rank truncated product of P-values, with application to genomewide association scans
    • DOI 10.1002/gepi.10264
    • Dudbridge F, Koeleman BPC: Rank truncated product of P values, with application to genomewide association scans. Genet Epidemiol 2003; 25: 360-366. (Pubitemid 37486884)
    • (2003) Genetic Epidemiology , vol.25 , Issue.4 , pp. 360-366
    • Dudbridge, F.1    Koeleman, B.P.C.2
  • 17
    • 77955064853 scopus 로고    scopus 로고
    • A versatile gene-based test for genome-wide association studies
    • Liu JZ, Mcrae AF, Nyholt DR et al: A versatile gene-based test for genome-wide association studies. Am J Hum Genet 2010; 87: 139-145.
    • (2010) Am J Hum Genet , vol.87 , pp. 139-145
    • Liu, J.Z.1    McRae, A.F.2    Nyholt, D.R.3
  • 18
    • 51749119425 scopus 로고    scopus 로고
    • Analysis of multiple snps in a candidate gene or region
    • Chapman J, Whittaker J: Analysis of multiple SNPs in a candidate gene or region. Genet Epidemiol 2008; 32: 560-566.
    • (2008) Genet Epidemiol , vol.32 , pp. 560-566
    • Chapman, J.1    Whittaker, J.2
  • 19
    • 0001038967 scopus 로고
    • The generalization of student's ratio
    • Hotelling H: The generalization of Student's ratio. Ann Math Stat 1931; 3: 360-378.
    • (1931) Ann Math Stat , vol.3 , pp. 360-378
    • Hotelling, H.1
  • 21
    • 33846565755 scopus 로고    scopus 로고
    • Improved power by use of a weighted score test for linkage disequilibrium mapping
    • DOI 10.1086/511312
    • Wang T, Elston RC: Improved power by use of a weighted score test for linkage disequilibrium mapping. Am J Hum Genet 2007; 80: 353-360. (Pubitemid 46175683)
    • (2007) American Journal of Human Genetics , vol.80 , Issue.2 , pp. 353-360
    • Wang, T.1    Elston, R.C.2
  • 22
    • 0032714352 scopus 로고    scopus 로고
    • Genomic control for association studies
    • Devlin B, Roeder K: Genomic control for association studies. Biometrics 1999; 55: 997-1004.
    • (1999) Biometrics , vol.55 , pp. 997-1004
    • Devlin, B.1    Roeder, K.2
  • 23
    • 15544379620 scopus 로고    scopus 로고
    • Analysis of single-locus tests to detect gene/disease associations
    • DOI 10.1002/gepi.20050
    • Roeder K, Bacanu SA, Sonpar V, Zhang X, Devlin B: Analysis of single-locus tests to detect gene/disease associations. Genet Epidemiol 2005; 28: 207-219. (Pubitemid 40404575)
    • (2005) Genetic Epidemiology , vol.28 , Issue.3 , pp. 207-219
    • Roeder, K.1    Bacanu, S.-A.2    Sonpar, V.3    Zhang, X.4    Devlin, B.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.