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Volumn 6, Issue , 2012, Pages

Condor-COPASI: High-throughput computing for biochemical networks

Author keywords

Computational modelling; Distributed computing; High throughput computing; Simulation; Systems biology

Indexed keywords

ALGORITHM; ARTICLE; BIOLOGICAL MODEL; COMPUTER PROGRAM; METHODOLOGY; SIGNAL TRANSDUCTION; STATISTICS; SYSTEMS BIOLOGY; TIME;

EID: 84864151850     PISSN: None     EISSN: 17520509     Source Type: Journal    
DOI: 10.1186/1752-0509-6-91     Document Type: Article
Times cited : (43)

References (25)
  • 1
    • 0036500993 scopus 로고    scopus 로고
    • Systems biology: a brief overview
    • 10.1126/science.1069492, 11872829
    • Kitano H. Systems biology: a brief overview. Science 2002, 295(5560):1662-4. 10.1126/science.1069492, 11872829.
    • (2002) Science , vol.295 , Issue.5560 , pp. 1662-1664
    • Kitano, H.1
  • 4
    • 60849119860 scopus 로고    scopus 로고
    • Biochemical simulations: stochastic, approximate stochastic and hybrid approaches
    • Pahle J. Biochemical simulations: stochastic, approximate stochastic and hybrid approaches. Briefings Bioinf 2009, 10:53-64.
    • (2009) Briefings Bioinf , vol.10 , pp. 53-64
    • Pahle, J.1
  • 6
    • 4544344218 scopus 로고    scopus 로고
    • Web-based kinetic modelling using JWS Online
    • 10.1093/bioinformatics/bth200, 15072998
    • Olivier BG, Snoep JL. Web-based kinetic modelling using JWS Online. Bioinformatics 2004, 20(13):2143-4. 10.1093/bioinformatics/bth200, 15072998.
    • (2004) Bioinformatics , vol.20 , Issue.13 , pp. 2143-2144
    • Olivier, B.G.1    Snoep, J.L.2
  • 7
    • 0035478586 scopus 로고    scopus 로고
    • The Virtual Cell: a software environment for computational cell biology
    • 10.1016/S0167-7799(01)01740-1, 11587765
    • Loew LM, Schaff JC. The Virtual Cell: a software environment for computational cell biology. Trends Biotechnol 2001, 19(10):401-6. 10.1016/S0167-7799(01)01740-1, 11587765.
    • (2001) Trends Biotechnol , vol.19 , Issue.10 , pp. 401-406
    • Loew, L.M.1    Schaff, J.C.2
  • 9
    • 70350383070 scopus 로고    scopus 로고
    • Design and architecture of web services for simulation of biochemical systems
    • Berlin / Heidelberg: Springer, Paton N, Missier P, Hedeler C
    • Dada J, Mendes P. Design and architecture of web services for simulation of biochemical systems. Data Integration in the, Life Sciences 2009, 182-195. Berlin / Heidelberg: Springer, Paton N, Missier P, Hedeler C.
    • (2009) Data Integration in the, Life Sciences , pp. 182-195
    • Dada, J.1    Mendes, P.2
  • 12
    • 84871363275 scopus 로고    scopus 로고
    • Python Programming Language - Official Website
    • Python Programming Language - Official Website. [http://python.org/].
  • 13
    • 84871430548 scopus 로고    scopus 로고
    • Django | The Web framework for perfectionists with deadlines
    • Django | The Web framework for perfectionists with deadlines. [http://www.djangoproject.com/].
  • 14
    • 84870838603 scopus 로고    scopus 로고
    • Matplotlib: python plotting
    • matplotlib: python plotting. [http://matplotlib.sourceforge.net/].
  • 15
    • 84871460925 scopus 로고    scopus 로고
    • Visualization: Motion Chart - Google Chart Tools - Google Code
    • Visualization: Motion Chart - Google Chart Tools - Google Code. [http://code.google.com/apis/chart/interactive/docs/gallery/motionchart.html].
  • 16
    • 51049105974 scopus 로고    scopus 로고
    • A new strategy for assessing sensitivities in biochemical models
    • Sahle S, Mendes P, Hoops S, Kummer U. A new strategy for assessing sensitivities in biochemical models. Philos Trans R Soc A 2008, 366(1880):3619-3631.
    • (2008) Philos Trans R Soc A , vol.366 , Issue.1880 , pp. 3619-3631
    • Sahle, S.1    Mendes, P.2    Hoops, S.3    Kummer, U.4
  • 17
    • 0021481124 scopus 로고
    • Newton-type minimization via the Lanczos method
    • Nash S. Newton-type minimization via the Lanczos method. SIAM J Numer Anal 1984, 21(4):770-788.
    • (1984) SIAM J Numer Anal , vol.21 , Issue.4 , pp. 770-788
    • Nash, S.1
  • 20
    • 0029790351 scopus 로고    scopus 로고
    • Ultrasensitivity in the mitogen-activated protein kinase cascade
    • Huang CY, Ferrell JE. Ultrasensitivity in the mitogen-activated protein kinase cascade. Proc Nat Acad Sci U S A 1996, 93(19):10078-10083.
    • (1996) Proc Nat Acad Sci U S A , vol.93 , Issue.19 , pp. 10078-10083
    • Huang, C.Y.1    Ferrell, J.E.2
  • 21
    • 0033850017 scopus 로고    scopus 로고
    • Switching from Simple to Complex Oscillations in Calcium Signaling
    • 10.1016/S0006-3495(00)76373-9, 1301015, 10968983
    • Kummer U, Olsen LF, Dixon CJ, Green AK, Bomberg-Bauer E, Baier G. Switching from Simple to Complex Oscillations in Calcium Signaling. Biophys J 2000, 79(3):1188-1195. 10.1016/S0006-3495(00)76373-9, 1301015, 10968983.
    • (2000) Biophys J , vol.79 , Issue.3 , pp. 1188-1195
    • Kummer, U.1    Olsen, L.F.2    Dixon, C.J.3    Green, A.K.4    Bomberg-Bauer, E.5    Baier, G.6
  • 22
    • 84871393271 scopus 로고    scopus 로고
    • Oracle Grid Engine
    • Oracle Grid Engine. http://www.oracle.com/us/products/tools/oracle-grid-engine-075549.html.
  • 23
    • 84871432054 scopus 로고    scopus 로고
    • Maui Cluster Scheduler
    • Maui Cluster Scheduler. [http://www.clusterresources.com/products/maui-cluster-scheduler.php].
  • 24
    • 84871429328 scopus 로고    scopus 로고
    • TORQUE Resource Manager
    • TORQUE Resource Manager. [http://www.adaptivecomputing.com/products/open-source/torque/].
  • 25
    • 84871424839 scopus 로고    scopus 로고
    • PBS Works - Enabling On-Demand Computing
    • PBS Works - Enabling On-Demand Computing. [http://www.pbsworks.com/].


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.