-
1
-
-
33751080282
-
The role of modeling in systems biology
-
Cambridge: MIT Press, Szallasi Z, Stelling J, Periwal V
-
Kell DB, Knowles JD. The role of modeling in systems biology. System modeling in cellular biology: from concepts to nuts and bolts 2006, 3-18. Cambridge: MIT Press, Szallasi Z, Stelling J, Periwal V.
-
(2006)
System modeling in cellular biology: from concepts to nuts and bolts
, pp. 3-18
-
-
Kell, D.B.1
Knowles, J.D.2
-
2
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
10.1093/nar/gkm882, 2238879, 18077471
-
Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, Itoh M, Katayama T, Kawashima S, Okuda S, Tokimatsu T, et al. KEGG for linking genomes to life and the environment. Nucleic Acids Res 2008, 36:D480-D484. 10.1093/nar/gkm882, 2238879, 18077471.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
Itoh, M.6
Katayama, T.7
Kawashima, S.8
Okuda, S.9
Tokimatsu, T.10
-
3
-
-
34250191844
-
Reactome: a knowledgebase of biological pathways and processes
-
10.1186/gb-2007-8-3-r39, 1868929, 17367534
-
Vastrik I, D'Eustachio P, Schmidt E, Joshi-Tope G, Gopinath G, Croft D, de Bono B, Gillespie M, Jassal B, Lewis S, et al. Reactome: a knowledgebase of biological pathways and processes. Genome Biol 2007, 8:R39. 10.1186/gb-2007-8-3-r39, 1868929, 17367534.
-
(2007)
Genome Biol
, vol.8
-
-
Vastrik, I.1
D'Eustachio, P.2
Schmidt, E.3
Joshi-Tope, G.4
Gopinath, G.5
Croft, D.6
de Bono, B.7
Gillespie, M.8
Jassal, B.9
Lewis, S.10
-
4
-
-
3843128481
-
Reconstruction and Validation of Saccharomyces cerevisiae iND750, a Fully Compartmentalized Genome-Scale Metabolic Model
-
10.1101/gr.2250904, 442145, 15197165
-
Duarte N, Herrgård M, Palsson B. Reconstruction and Validation of Saccharomyces cerevisiae iND750, a Fully Compartmentalized Genome-Scale Metabolic Model. Genome Res 2004, 14(7):1298-1309. 10.1101/gr.2250904, 442145, 15197165.
-
(2004)
Genome Res
, vol.14
, Issue.7
, pp. 1298-1309
-
-
Duarte, N.1
Herrgård, M.2
Palsson, B.3
-
5
-
-
33846910173
-
Global reconstruction of the human metabolic network based on genomic and bibliomic data
-
10.1073/pnas.0610772104, 1794290, 17267599
-
Duarte NC, Becker SA, Jamshidi N, Thiele I, Mo ML, Vo TD, Srivas R, Palsson BO. Global reconstruction of the human metabolic network based on genomic and bibliomic data. Proc Natl Acad Sci USA 2007, 104(6):1777-1782. 10.1073/pnas.0610772104, 1794290, 17267599.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.6
, pp. 1777-1782
-
-
Duarte, N.C.1
Becker, S.A.2
Jamshidi, N.3
Thiele, I.4
Mo, M.L.5
Vo, T.D.6
Srivas, R.7
Palsson, B.O.8
-
6
-
-
63349096475
-
The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program
-
10.1016/j.jprot.2008.11.010, 2689360, 19084081
-
Schneider M, Lane L, Boutet E, Lieberherr D, Tognolli M, Bougueleret L, Bairoch A. The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program. J Proteomics 2009, 72(3):567-573. 10.1016/j.jprot.2008.11.010, 2689360, 19084081.
-
(2009)
J Proteomics
, vol.72
, Issue.3
, pp. 567-573
-
-
Schneider, M.1
Lane, L.2
Boutet, E.3
Lieberherr, D.4
Tognolli, M.5
Bougueleret, L.6
Bairoch, A.7
-
7
-
-
34249889888
-
Storing and annotating of kinetic data
-
Rojas I, Golebiewski M, Kania R, Krebs O, Mir S, Weidemann A, Wittig U. Storing and annotating of kinetic data. In Silico Biol 2007, 7(2 Suppl):S37-S44.
-
(2007)
In Silico Biol
, vol.7
, Issue.2 SUPPL
-
-
Rojas, I.1
Golebiewski, M.2
Kania, R.3
Krebs, O.4
Mir, S.5
Weidemann, A.6
Wittig, U.7
-
8
-
-
6044249965
-
Saccharomyces genome database: underlying principles and organisation
-
10.1093/bib/5.1.9, 15153302
-
Dwight SS, Balakrishnan R, Christie KR, Costanzo MC, Dolinski K, Engel SR, Feierbach B, Fisk DG, Hirschman J, Hong EL, et al. Saccharomyces genome database: underlying principles and organisation. Brief Bioinform 2004, 5(1):9-22. 10.1093/bib/5.1.9, 15153302.
-
(2004)
Brief Bioinform
, vol.5
, Issue.1
, pp. 9-22
-
-
Dwight, S.S.1
Balakrishnan, R.2
Christie, K.R.3
Costanzo, M.C.4
Dolinski, K.5
Engel, S.R.6
Feierbach, B.7
Fisk, D.G.8
Hirschman, J.9
Hong, E.L.10
-
9
-
-
38549127678
-
ChEBI: a database and ontology for chemical entities of biological interest
-
10.1093/nar/gkm791, 2238832, 17932057
-
Degtyarenko K, Matos P, Ennis M, Hastings J, Zbinden M, McNaught A, Alcántara R, Darsow M, Guedj M, Ashburner M. ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res 2008, 36:D344-D350. 10.1093/nar/gkm791, 2238832, 17932057.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Degtyarenko, K.1
Matos, P.2
Ennis, M.3
Hastings, J.4
Zbinden, M.5
McNaught, A.6
Alcántara, R.7
Darsow, M.8
Guedj, M.9
Ashburner, M.10
-
10
-
-
54949108677
-
PubChem: Integrated Platform of Small Molecules and Biological Activities
-
Elsevier, Wheeler R, Spellmeyer D
-
Bolton EE, Wang Y, Thiessen PA, Bryant SH. PubChem: Integrated Platform of Small Molecules and Biological Activities. Annual Reports in Computational Chemistry 2008, 4:217-241. Elsevier, Wheeler R, Spellmeyer D.
-
(2008)
Annual Reports in Computational Chemistry
, vol.4
, pp. 217-241
-
-
Bolton, E.E.1
Wang, Y.2
Thiessen, P.A.3
Bryant, S.H.4
-
11
-
-
33751356224
-
Systems biology, metabolic modelling and metabolomics in drug discovery and development
-
10.1016/j.drudis.2006.10.004, 17129827
-
Kell DB. Systems biology, metabolic modelling and metabolomics in drug discovery and development. Drug Discov Today 2006, 11(23-24):1085-1092. 10.1016/j.drudis.2006.10.004, 17129827.
-
(2006)
Drug Discov Today
, vol.11
, Issue.23-24
, pp. 1085-1092
-
-
Kell, D.B.1
-
12
-
-
34249880382
-
Integration of CellDesigner and SABIO-RK
-
Funahashi A, Jouraku A, Matsuoka Y, Kitano H. Integration of CellDesigner and SABIO-RK. In Silico Biol 2007, 7(2 Suppl):S81-S90.
-
(2007)
In Silico Biol
, vol.7
, Issue.2 SUPPL
-
-
Funahashi, A.1
Jouraku, A.2
Matsuoka, Y.3
Kitano, H.4
-
13
-
-
33845368513
-
COPASI: a COmplex PAthway SImulator
-
10.1093/bioinformatics/btl485, 17032683
-
Hoops S, Sahle S, Lee C, Pahle J, Simus N, Singhal M, Xu L, Mendes P, Kummer U. COPASI: a COmplex PAthway SImulator. Bioinformatics 2006, 22(24):3067-3074. 10.1093/bioinformatics/btl485, 17032683.
-
(2006)
Bioinformatics
, vol.22
, Issue.24
, pp. 3067-3074
-
-
Hoops, S.1
Sahle, S.2
Lee, C.3
Pahle, J.4
Simus, N.5
Singhal, M.6
Xu, L.7
Mendes, P.8
Kummer, U.9
-
14
-
-
0242574982
-
Parameter Estimation in Biochemical Pathways: A Comparison of Global Optimization Methods
-
10.1101/gr.1262503, 403766, 14559783
-
Moles C, Mendes P, Banga J. Parameter Estimation in Biochemical Pathways: A Comparison of Global Optimization Methods. Genome Res 2003, 13(11):2467-2474. 10.1101/gr.1262503, 403766, 14559783.
-
(2003)
Genome Res
, vol.13
, Issue.11
, pp. 2467-2474
-
-
Moles, C.1
Mendes, P.2
Banga, J.3
-
15
-
-
10244255212
-
Taverna: a tool for the composition and enactment of bioinformatics workflows
-
10.1093/bioinformatics/bth361, 15201187
-
Oinn T, Addis M, Ferris J, Marvin D, Senger M, Greenwood M, Carver T, Glover K, Pocock MR, Wipat A, et al. Taverna: a tool for the composition and enactment of bioinformatics workflows. Bioinformatics 2004, 20(17):3045-3054. 10.1093/bioinformatics/bth361, 15201187.
-
(2004)
Bioinformatics
, vol.20
, Issue.17
, pp. 3045-3054
-
-
Oinn, T.1
Addis, M.2
Ferris, J.3
Marvin, D.4
Senger, M.5
Greenwood, M.6
Carver, T.7
Glover, K.8
Pocock, M.R.9
Wipat, A.10
-
16
-
-
33747833111
-
Taverna: a tool for building and running workflows of services
-
Web Server, 10.1093/nar/gkl320, 1538887, 16845108
-
Hull D, Wolstencroft K, Stevens R, Goble C, Pocock MR, Li P, Oinn T. Taverna: a tool for building and running workflows of services. Nucleic Acids Res 2006, (34 Web Server):W729-W732. 10.1093/nar/gkl320, 1538887, 16845108.
-
(2006)
Nucleic Acids Res
, Issue.34
-
-
Hull, D.1
Wolstencroft, K.2
Stevens, R.3
Goble, C.4
Pocock, M.R.5
Li, P.6
Oinn, T.7
-
17
-
-
0037342537
-
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
-
10.1093/bioinformatics/btg015, 12611808
-
Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, Arkin AP, Bornstein BJ, Bray D, Cornish-Bowden A, et al. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics 2003, 19(4):524-531. 10.1093/bioinformatics/btg015, 12611808.
-
(2003)
Bioinformatics
, vol.19
, Issue.4
, pp. 524-531
-
-
Hucka, M.1
Finney, A.2
Sauro, H.M.3
Bolouri, H.4
Doyle, J.C.5
Kitano, H.6
Arkin, A.P.7
Bornstein, B.J.8
Bray, D.9
Cornish-Bowden, A.10
-
18
-
-
28644433993
-
Minimum information requested in the annotation of biochemical models (MIRIAM)
-
10.1038/nbt1156, 16333295
-
Le Novere N, Finney A, Hucka M, Bhalla U, Campagne F, Collado-Vides J, Crampin E, Halstead M, Klipp E, Mendes P, et al. Minimum information requested in the annotation of biochemical models (MIRIAM). Nat Biotechnol 2005, 23(12):1509-1515. 10.1038/nbt1156, 16333295.
-
(2005)
Nat Biotechnol
, vol.23
, Issue.12
, pp. 1509-1515
-
-
Le Novere, N.1
Finney, A.2
Hucka, M.3
Bhalla, U.4
Campagne, F.5
Collado-Vides, J.6
Crampin, E.7
Halstead, M.8
Klipp, E.9
Mendes, P.10
-
19
-
-
77951953604
-
SBRML: a markup language to associate systems biology data with models
-
Dada JO, Spasic I, Paton NW, Mendes P. SBRML: a markup language to associate systems biology data with models. Bioinformatics 2009, 26(7):932-938.
-
(2009)
Bioinformatics
, vol.26
, Issue.7
, pp. 932-938
-
-
Dada, J.O.1
Spasic, I.2
Paton, N.W.3
Mendes, P.4
-
20
-
-
33847218326
-
MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics
-
10.1186/1471-2105-7-281, 1522028, 16753052
-
Spasic I, Dunn W, Velarde G, Tseng A, Jenkins H, Hardy N, Oliver S, Kell D. MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics. BMC Bioinformatics 2006, 7:281. 10.1186/1471-2105-7-281, 1522028, 16753052.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 281
-
-
Spasic, I.1
Dunn, W.2
Velarde, G.3
Tseng, A.4
Jenkins, H.5
Hardy, N.6
Oliver, S.7
Kell, D.8
-
21
-
-
77956300325
-
Enzyme kinetics informatics: from instrument to browser
-
10.1111/j.1742-4658.2010.07778.x, 20738395
-
Swainston N, Golebiewski M, Messiha H, Malys N, Kania R, Kengne S, Krebs O, Mir S, Sauer-Danzwith H, Smallbone K, et al. Enzyme kinetics informatics: from instrument to browser. FEBS J 2010, 277:3769-3779. 10.1111/j.1742-4658.2010.07778.x, 20738395.
-
(2010)
FEBS J
, vol.277
, pp. 3769-3779
-
-
Swainston, N.1
Golebiewski, M.2
Messiha, H.3
Malys, N.4
Kania, R.5
Kengne, S.6
Krebs, O.7
Mir, S.8
Sauer-Danzwith, H.9
Smallbone, K.10
-
22
-
-
53749085229
-
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology
-
10.1038/nbt1492, 18846089
-
Herrgard M, Swainston N, Dobson P, Dunn W, Arga Y, Arvas M, Buthgen N, Borger S, Costenoble R, Heinemann M, et al. A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. Nat Biotechnol 2008, 26(10):1155-1160. 10.1038/nbt1492, 18846089.
-
(2008)
Nat Biotechnol
, vol.26
, Issue.10
, pp. 1155-1160
-
-
Herrgard, M.1
Swainston, N.2
Dobson, P.3
Dunn, W.4
Arga, Y.5
Arvas, M.6
Buthgen, N.7
Borger, S.8
Costenoble, R.9
Heinemann, M.10
-
23
-
-
70350383070
-
Design and Architecture of Web Services for Simulation of Biochemical Systems
-
Springer Berlin/Heidelberg
-
Dada JO, Mendes P. Design and Architecture of Web Services for Simulation of Biochemical Systems. Data Integration in the Life Sciences 6th International Workshop, DILS 2009, Manchester, UK, July 20-22, 2009. Proceedings: 2009 2009, 182-195. Springer Berlin/Heidelberg.
-
(2009)
Data Integration in the Life Sciences 6th International Workshop, DILS 2009, Manchester, UK, July 20-22, 2009. Proceedings: 2009
, pp. 182-195
-
-
Dada, J.O.1
Mendes, P.2
-
24
-
-
0030305457
-
R: A language for data analysis and graphics
-
Ihaka R, Gentleman R. R: A language for data analysis and graphics. J Comput Graph Stat 1996, 5:299-314.
-
(1996)
J Comput Graph Stat
, vol.5
, pp. 299-314
-
-
Ihaka, R.1
Gentleman, R.2
-
25
-
-
40749162829
-
LibSBML: An API Library for SBML
-
Bornstein B, Keating S, Jouraku A, Hucka M. LibSBML: An API Library for SBML. Bioinformatics 2008, 26(6):880-881.
-
(2008)
Bioinformatics
, vol.26
, Issue.6
, pp. 880-881
-
-
Bornstein, B.1
Keating, S.2
Jouraku, A.3
Hucka, M.4
-
26
-
-
38349133639
-
Automated manipulation of systems biology models using libSBML within Taverna workflows
-
10.1093/bioinformatics/btm578, 18056069
-
Li P, Oinn T, Soiland S, Kell D. Automated manipulation of systems biology models using libSBML within Taverna workflows. Bioinformatics 2008, 24:287-289. 10.1093/bioinformatics/btm578, 18056069.
-
(2008)
Bioinformatics
, vol.24
, pp. 287-289
-
-
Li, P.1
Oinn, T.2
Soiland, S.3
Kell, D.4
-
27
-
-
0032406131
-
Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation
-
10.1093/bioinformatics/14.10.869, 9927716
-
Mendes P, Kell DB. Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation. Bioinformatics 1998, 14:869-883. 10.1093/bioinformatics/14.10.869, 9927716.
-
(1998)
Bioinformatics
, vol.14
, pp. 869-883
-
-
Mendes, P.1
Kell, D.B.2
-
28
-
-
0033857139
-
Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? Testing biochemistry
-
10.1046/j.1432-1327.2000.01527.x, 10951190
-
Teusink B, Passarge J, Reijenga C, Esgalhado E, van der Weijden C, Schepper M, Walsh M, Bakker B, van Dam K, Westerhoff H, et al. Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? Testing biochemistry. Eur J Biochem 2000, 267:5313-5329. 10.1046/j.1432-1327.2000.01527.x, 10951190.
-
(2000)
Eur J Biochem
, vol.267
, pp. 5313-5329
-
-
Teusink, B.1
Passarge, J.2
Reijenga, C.3
Esgalhado, E.4
van der Weijden, C.5
Schepper, M.6
Walsh, M.7
Bakker, B.8
van Dam, K.9
Westerhoff, H.10
-
29
-
-
0036038886
-
Schemes of flux control in a model of Saccharomyces cerevisiae glycolysis
-
10.1046/j.1432-1033.2002.03055.x, 12180966
-
Pritchard L, Kell DB. Schemes of flux control in a model of Saccharomyces cerevisiae glycolysis. Eur J Biochem 2002, 269(16):3894-3904. 10.1046/j.1432-1033.2002.03055.x, 12180966.
-
(2002)
Eur J Biochem
, vol.269
, Issue.16
, pp. 3894-3904
-
-
Pritchard, L.1
Kell, D.B.2
-
30
-
-
0029927663
-
Oscillatory, stochastic and chaotic growth rate fluctuations in permittistatically controlled yeast cultures
-
10.1016/0303-2647(95)01577-9, 8735387
-
Davey HM, Davey CL, Woodward AM, Edmonds AN, Lee AW, Kell DB. Oscillatory, stochastic and chaotic growth rate fluctuations in permittistatically controlled yeast cultures. Biosystems 1996, 39(1):43-61. 10.1016/0303-2647(95)01577-9, 8735387.
-
(1996)
Biosystems
, vol.39
, Issue.1
, pp. 43-61
-
-
Davey, H.M.1
Davey, C.L.2
Woodward, A.M.3
Edmonds, A.N.4
Lee, A.W.5
Kell, D.B.6
-
31
-
-
0035991154
-
Hybridization array technology coupled with chemostat culture: Tools to interrogate gene expression in Saccharomyces cerevisiae
-
10.1016/S1046-2023(02)00032-4, 12054884
-
Hayes A, Zhang N, Wu J, Butler P, Hauser N, Hoheisel J, Lim F, Sharrocks A, Oliver S. Hybridization array technology coupled with chemostat culture: Tools to interrogate gene expression in Saccharomyces cerevisiae. Methods 2002, 26(3):281-290. 10.1016/S1046-2023(02)00032-4, 12054884.
-
(2002)
Methods
, vol.26
, Issue.3
, pp. 281-290
-
-
Hayes, A.1
Zhang, N.2
Wu, J.3
Butler, P.4
Hauser, N.5
Hoheisel, J.6
Lim, F.7
Sharrocks, A.8
Oliver, S.9
-
32
-
-
58149157628
-
The PRIDE proteomics identifications database: data submission, query, and dataset comparison
-
full_text, 18592187
-
Jones P, Cote R. The PRIDE proteomics identifications database: data submission, query, and dataset comparison. Methods Mol Biol 2008, 484:287-303. full_text, 18592187.
-
(2008)
Methods Mol Biol
, vol.484
, pp. 287-303
-
-
Jones, P.1
Cote, R.2
-
33
-
-
0035281870
-
Metabolic modeling of microbial strains in silico
-
10.1016/S0968-0004(00)01754-0, 11246024
-
Covert MW, Schilling CH, Famili I, Edwards JS, Selkov E, Palsson BO. Metabolic modeling of microbial strains in silico. Trends Biochem Sci 2001, 26(3):179-186. 10.1016/S0968-0004(00)01754-0, 11246024.
-
(2001)
Trends Biochem Sci
, vol.26
, Issue.3
, pp. 179-186
-
-
Covert, M.W.1
Schilling, C.H.2
Famili, I.3
Edwards, J.S.4
Selkov, E.5
Palsson, B.O.6
-
34
-
-
45449110775
-
SYCAMORE - A SYstems biology Computational Analysis and MOdeling Research Environment
-
10.1093/bioinformatics/btn207, 18463116
-
Weidemann A, Richter S, Stein M, Sahle S, Gauges R, Gabdoulline R, Surovtsova I, Semmelrock N, Besson B, Rojas I, et al. SYCAMORE - A SYstems biology Computational Analysis and MOdeling Research Environment. Bioinformatics 2008, 1463-1464. 10.1093/bioinformatics/btn207, 18463116.
-
(2008)
Bioinformatics
, pp. 1463-1464
-
-
Weidemann, A.1
Richter, S.2
Stein, M.3
Sahle, S.4
Gauges, R.5
Gabdoulline, R.6
Surovtsova, I.7
Semmelrock, N.8
Besson, B.9
Rojas, I.10
-
35
-
-
33644877164
-
BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems
-
Database
-
Le Novere N, Bornstein B, Broicher A, Courtot M, Donizelli M, Dharuri H, Li L, Sauro H, Schilstra M, Shapiro B, et al. BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. Nucleic Acids Res 2006, (34 Database):1362-4962.
-
(2006)
Nucleic Acids Res
, Issue.34
, pp. 1362-4962
-
-
Le Novere, N.1
Bornstein, B.2
Broicher, A.3
Courtot, M.4
Donizelli, M.5
Dharuri, H.6
Li, L.7
Sauro, H.8
Schilstra, M.9
Shapiro, B.10
-
36
-
-
4544344218
-
Web-based kinetic modelling using JWS Online
-
10.1093/bioinformatics/bth200, 15072998
-
Oliver B, Snoep J. Web-based kinetic modelling using JWS Online. Bioinformatics 2004, 20:2143-2144. 10.1093/bioinformatics/bth200, 15072998.
-
(2004)
Bioinformatics
, vol.20
, pp. 2143-2144
-
-
Oliver, B.1
Snoep, J.2
-
37
-
-
77955534569
-
Integration of metabolic databases for the reconstruction of genome-scale metabolic networks
-
10.1186/1752-0509-4-114, 2930596, 20712863
-
Radrich K, Tsuruoka Y, Dobson P, Gevorgyan A, Swainston N, Baart G, Schwartz J-M. Integration of metabolic databases for the reconstruction of genome-scale metabolic networks. BMC Syst Biol 2010, 4(1):114.. 10.1186/1752-0509-4-114, 2930596, 20712863.
-
(2010)
BMC Syst Biol
, vol.4
, Issue.1
-
-
Radrich, K.1
Tsuruoka, Y.2
Dobson, P.3
Gevorgyan, A.4
Swainston, N.5
Baart, G.6
Schwartz, J.-.M.7
-
38
-
-
70350380468
-
An Integration and Analysis Pipeline for Systems Biology in Crop Plant Metabolism
-
Springer-Verlag
-
Weise S, Colmsee C, Grafahrend-Belau E, Junker B, Klukas C, Lange M, Scholz U, Schreiber F. An Integration and Analysis Pipeline for Systems Biology in Crop Plant Metabolism. Data Integration in the Life Sciences 6th International Workshop, DILS 2009, Manchester, UK, July 20-22, 2009. Proceedings. 2009 2009, 196-203. Springer-Verlag.
-
(2009)
Data Integration in the Life Sciences 6th International Workshop, DILS 2009, Manchester, UK, July 20-22, 2009. Proceedings. 2009
, pp. 196-203
-
-
Weise, S.1
Colmsee, C.2
Grafahrend-Belau, E.3
Junker, B.4
Klukas, C.5
Lange, M.6
Scholz, U.7
Schreiber, F.8
-
39
-
-
77952797285
-
Streamlining the construction of large-scale dynamic models using generic kinetic equations
-
10.1093/bioinformatics/btq136, 20363732
-
Adiamah D, Handl J, Schwartz J-M. Streamlining the construction of large-scale dynamic models using generic kinetic equations. Bioinformatics 2010, 26(10):1324-1331. 10.1093/bioinformatics/btq136, 20363732.
-
(2010)
Bioinformatics
, vol.26
, Issue.10
, pp. 1324-1331
-
-
Adiamah, D.1
Handl, J.2
Schwartz, J.-.M.3
-
40
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
-
10.1038/75556, 10802651
-
Ashburner M, Ball C, Blake J, Botstein D, Butler H, Cherry J, Davis A, Dolinski K, Dwight S, Eppig J, et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000, 25(1):25-29. 10.1038/75556, 10802651.
-
(2000)
Nat Genet
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.2
Blake, J.3
Botstein, D.4
Butler, H.5
Cherry, J.6
Davis, A.7
Dolinski, K.8
Dwight, S.9
Eppig, J.10
-
41
-
-
43649095807
-
The markup is the model: Reasoning about systems biology models in the Semantic Web era
-
10.1016/j.jtbi.2007.10.023, 18054049
-
Kell DB, Mendes P. The markup is the model: Reasoning about systems biology models in the Semantic Web era. J Theor Biol 2008, 252:538-543. 10.1016/j.jtbi.2007.10.023, 18054049.
-
(2008)
J Theor Biol
, vol.252
, pp. 538-543
-
-
Kell, D.B.1
Mendes, P.2
-
42
-
-
69949131313
-
LibAnnotationSBML: a library for exploiting SBML annotations
-
10.1093/bioinformatics/btp392, 2734318, 19561017
-
Swainston N, Mendes P. libAnnotationSBML: a library for exploiting SBML annotations. Bioinformatics 2009, 25(17):2292-2293. 10.1093/bioinformatics/btp392, 2734318, 19561017.
-
(2009)
Bioinformatics
, vol.25
, Issue.17
, pp. 2292-2293
-
-
Swainston, N.1
Mendes, P.2
-
43
-
-
34548860112
-
The Edinburgh human metabolic network reconstruction and its functional analysis
-
10.1038/msb4100177, 2013923, 17882155
-
Ma H, Sorokin A, Mazein A, Selkov A, Selkov E, Demin O, Goryanin I. The Edinburgh human metabolic network reconstruction and its functional analysis. Mol Syst Biol 2007, 3:135. 10.1038/msb4100177, 2013923, 17882155.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 135
-
-
Ma, H.1
Sorokin, A.2
Mazein, A.3
Selkov, A.4
Selkov, E.5
Demin, O.6
Goryanin, I.7
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