메뉴 건너뛰기




Volumn 368, Issue 2, 2012, Pages 415-426

The in vivo dissection of direct RFX-target gene promoters in C. elegans reveals a novel cis-regulatory element, the C-box

Author keywords

Caenorhabditis elegans; Cilia; Ciliated sensory neurons; Cis regulatory motifs; Regulatory Factor X transcription factors

Indexed keywords

GREEN FLUORESCENT PROTEIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR RFX; UNCLASSIFIED DRUG;

EID: 84864073761     PISSN: 00121606     EISSN: 1095564X     Source Type: Journal    
DOI: 10.1016/j.ydbio.2012.05.033     Document Type: Article
Times cited : (24)

References (45)
  • 1
    • 51649112751 scopus 로고    scopus 로고
    • Identification and characterization of novel human tissue-specific RFX transcription factors
    • Aftab S., Semenec L., Chu J.S., Chen N. Identification and characterization of novel human tissue-specific RFX transcription factors. BMC Evol. Biol. 2008, 8:226.
    • (2008) BMC Evol. Biol. , vol.8 , pp. 226
    • Aftab, S.1    Semenec, L.2    Chu, J.S.3    Chen, N.4
  • 2
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey T.L., Elkan C. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol. 1994, 2:28-36.
    • (1994) Proc. Int. Conf. Intell. Syst. Mol. Biol. , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 4
    • 2942521105 scopus 로고    scopus 로고
    • CisOrtho: a program pipeline for genome-wide identification of transcription factor target genes using phylogenetic footprinting
    • Bigelow H.R., Wenick A.S., Wong A., Hobert O. CisOrtho: a program pipeline for genome-wide identification of transcription factor target genes using phylogenetic footprinting. BMC Bioinformatics 2004, 5:27.
    • (2004) BMC Bioinformatics , vol.5 , pp. 27
    • Bigelow, H.R.1    Wenick, A.S.2    Wong, A.3    Hobert, O.4
  • 6
    • 0037290834 scopus 로고    scopus 로고
    • Transcriptional regulation of the MHC class II antigen presentation pathway
    • Boss J.M., Jensen P.E. Transcriptional regulation of the MHC class II antigen presentation pathway. Curr. Opin. Immunol. 2003, 15:105-111.
    • (2003) Curr. Opin. Immunol. , vol.15 , pp. 105-111
    • Boss, J.M.1    Jensen, P.E.2
  • 7
    • 0016063911 scopus 로고
    • The genetics of Caenorhabditis elegans
    • Brenner S. The genetics of Caenorhabditis elegans. Genetics 1974, 77:71-94.
    • (1974) Genetics , vol.77 , pp. 71-94
    • Brenner, S.1
  • 8
    • 34249849109 scopus 로고    scopus 로고
    • Mutation of the MAP kinase dyf-5 affects docking and undocking of kinesin-2 motors and reduces their speed in the cilia of Caenorhabditis elegans
    • Burghoorn J., Dekkers M.P., Rademakers S., de Jong T., Willemsen R., Jansen G. Mutation of the MAP kinase dyf-5 affects docking and undocking of kinesin-2 motors and reduces their speed in the cilia of Caenorhabditis elegans. Proc. Natl. Acad. Sci. USA 2007, 104:7157-7162.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 7157-7162
    • Burghoorn, J.1    Dekkers, M.P.2    Rademakers, S.3    de Jong, T.4    Willemsen, R.5    Jansen, G.6
  • 10
    • 77952853308 scopus 로고    scopus 로고
    • Convergent evolution of RFX transcription factors and ciliary genes predated the origin of metazoans
    • Chu J.S., Baillie D.L., Chen N. Convergent evolution of RFX transcription factors and ciliary genes predated the origin of metazoans. BMC Evol. Biol. 2010, 10:130.
    • (2010) BMC Evol. Biol. , vol.10 , pp. 130
    • Chu, J.S.1    Baillie, D.L.2    Chen, N.3
  • 12
    • 33750514794 scopus 로고    scopus 로고
    • Caenorhabditis elegans dyf-2, an orthologue of human WDR19, is a component of the intraflagellar transport machinery in sensory cilia
    • Efimenko E., Blacque O.E., Ou G., Haycraft C.J., Yoder B.K., Scholey J.M., Leroux M.R., Swoboda P. Caenorhabditis elegans dyf-2, an orthologue of human WDR19, is a component of the intraflagellar transport machinery in sensory cilia. Mol. Biol. Cell 2006, 17:4801-4811.
    • (2006) Mol. Biol. Cell , vol.17 , pp. 4801-4811
    • Efimenko, E.1    Blacque, O.E.2    Ou, G.3    Haycraft, C.J.4    Yoder, B.K.5    Scholey, J.M.6    Leroux, M.R.7    Swoboda, P.8
  • 14
    • 70350362831 scopus 로고    scopus 로고
    • RFX3 governs growth and beating efficiency of motile cilia in mouse and controls the expression of genes involved in human ciliopathies
    • El Zein L., Ait-Lounis A., Morle L., Thomas J., Chhin B., Spassky N., Reith W., Durand B. RFX3 governs growth and beating efficiency of motile cilia in mouse and controls the expression of genes involved in human ciliopathies. J. Cell Sci. 2009, 122:3180-3189.
    • (2009) J. Cell Sci. , vol.122 , pp. 3180-3189
    • El Zein, L.1    Ait-Lounis, A.2    Morle, L.3    Thomas, J.4    Chhin, B.5    Spassky, N.6    Reith, W.7    Durand, B.8
  • 15
    • 0029982706 scopus 로고    scopus 로고
    • A consensus motif in the RFX DNA binding domain and binding domain mutants with altered specificity
    • Emery P., Strubin M., Hofmann K., Bucher P., Mach B., Reith W. A consensus motif in the RFX DNA binding domain and binding domain mutants with altered specificity. Mol. Cell Biol. 1996, 16:4486-4494.
    • (1996) Mol. Cell Biol. , vol.16 , pp. 4486-4494
    • Emery, P.1    Strubin, M.2    Hofmann, K.3    Bucher, P.4    Mach, B.5    Reith, W.6
  • 18
    • 0036214657 scopus 로고    scopus 로고
    • PCR fusion-based approach to create reporter gene constructs for expression analysis in transgenic C. elegans
    • Hobert O. PCR fusion-based approach to create reporter gene constructs for expression analysis in transgenic C. elegans. Biotechniques 2002, 32:728-730.
    • (2002) Biotechniques , vol.32 , pp. 728-730
    • Hobert, O.1
  • 19
    • 77957017473 scopus 로고    scopus 로고
    • The molecular and gene regulatory signature of a neuron
    • Hobert O., Carrera I., Stefanakis N. The molecular and gene regulatory signature of a neuron. Trends Neurosci. 2010, 33:435-445.
    • (2010) Trends Neurosci. , vol.33 , pp. 435-445
    • Hobert, O.1    Carrera, I.2    Stefanakis, N.3
  • 23
    • 13944275574 scopus 로고    scopus 로고
    • Identification of transcriptional regulatory elements in chemosensory receptor genes by probabilistic segmentation
    • McCarroll S.A., Li H., Bargmann C.I. Identification of transcriptional regulatory elements in chemosensory receptor genes by probabilistic segmentation. Curr. Biol. 2005, 15:347-352.
    • (2005) Curr. Biol. , vol.15 , pp. 347-352
    • McCarroll, S.A.1    Li, H.2    Bargmann, C.I.3
  • 25
    • 0025942107 scopus 로고
    • Efficient gene transfer in C. elegans: extrachromosomal maintenance and integration of transforming sequences
    • Mello C.C., Kramer J.M., Stinchcomb D., Ambros V. Efficient gene transfer in C. elegans: extrachromosomal maintenance and integration of transforming sequences. EMBO J. 1991, 10:3959-3970.
    • (1991) EMBO J. , vol.10 , pp. 3959-3970
    • Mello, C.C.1    Kramer, J.M.2    Stinchcomb, D.3    Ambros, V.4
  • 26
    • 13844271969 scopus 로고    scopus 로고
    • The dyf-3 gene encodes a novel protein required for sensory cilium formation in Caenorhabditis elegans
    • Murayama T., Toh Y., Ohshima Y., Koga M. The dyf-3 gene encodes a novel protein required for sensory cilium formation in Caenorhabditis elegans. J. Mol. Biol. 2005, 346:677-687.
    • (2005) J. Mol. Biol. , vol.346 , pp. 677-687
    • Murayama, T.1    Toh, Y.2    Ohshima, Y.3    Koga, M.4
  • 28
    • 70949108185 scopus 로고    scopus 로고
    • Cis-regulatory mechanisms of gene expression in an olfactory neuron type in Caenorhabditis elegans
    • Nokes E.B., Van Der Linden A.M., Winslow C., Mukhopadhyay S., Ma K., Sengupta P. Cis-regulatory mechanisms of gene expression in an olfactory neuron type in Caenorhabditis elegans. Dev. Dyn. 2009, 238:3080-3092.
    • (2009) Dev. Dyn. , vol.238 , pp. 3080-3092
    • Nokes, E.B.1    Van Der Linden, A.M.2    Winslow, C.3    Mukhopadhyay, S.4    Ma, K.5    Sengupta, P.6
  • 31
    • 77955593057 scopus 로고    scopus 로고
    • Regulatory factor X (RFX)-mediated transcriptional rewiring of ciliary genes in animals
    • Piasecki B.P., Burghoorn J., Swoboda P. Regulatory factor X (RFX)-mediated transcriptional rewiring of ciliary genes in animals. Proc. Natl. Acad. Sci. USA 2010, 107:12969-12974.
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 12969-12974
    • Piasecki, B.P.1    Burghoorn, J.2    Swoboda, P.3
  • 34
    • 33846813672 scopus 로고    scopus 로고
    • Detection of broadly expressed neuronal genes in C. elegans
    • Ruvinsky I., Ohler U., Burge C.B., Ruvkun G. Detection of broadly expressed neuronal genes in C. elegans. Dev. Biol. 2007, 302:617-626.
    • (2007) Dev. Biol. , vol.302 , pp. 617-626
    • Ruvinsky, I.1    Ohler, U.2    Burge, C.B.3    Ruvkun, G.4
  • 35
    • 0242467199 scopus 로고    scopus 로고
    • Functional tests of enhancer conservation between distantly related species
    • Ruvinsky I., Ruvkun G. Functional tests of enhancer conservation between distantly related species. Development 2003, 130:5133-5142.
    • (2003) Development , vol.130 , pp. 5133-5142
    • Ruvinsky, I.1    Ruvkun, G.2
  • 36
    • 0037508889 scopus 로고    scopus 로고
    • XBX-1 encodes a dynein light intermediate chain required for retrograde intraflagellar transport and cilia assembly in Caenorhabditis elegans
    • Schafer J.C., Haycraft C.J., Thomas J.H., Yoder B.K., Swoboda P. XBX-1 encodes a dynein light intermediate chain required for retrograde intraflagellar transport and cilia assembly in Caenorhabditis elegans. Mol. Biol. Cell 2003, 14:2057-2070.
    • (2003) Mol. Biol. Cell , vol.14 , pp. 2057-2070
    • Schafer, J.C.1    Haycraft, C.J.2    Thomas, J.H.3    Yoder, B.K.4    Swoboda, P.5
  • 37
    • 70649083251 scopus 로고    scopus 로고
    • Worms with a single functional sensory cilium generate proper neuron-specific behavioral output
    • Senti G., Ezcurra M., Lobner J., Schafer W.R., Swoboda P. Worms with a single functional sensory cilium generate proper neuron-specific behavioral output. Genetics 2009, 183:595-605.
    • (2009) Genetics , vol.183 , pp. 595-605
    • Senti, G.1    Ezcurra, M.2    Lobner, J.3    Schafer, W.R.4    Swoboda, P.5
  • 38
    • 59449087041 scopus 로고    scopus 로고
    • Distinct isoforms of the RFX transcription factor DAF-19 regulate ciliogenesis and maintenance of synaptic activity
    • Senti G., Swoboda P. Distinct isoforms of the RFX transcription factor DAF-19 regulate ciliogenesis and maintenance of synaptic activity. Mol. Biol. Cell 2008, 19:5517-5528.
    • (2008) Mol. Biol. Cell , vol.19 , pp. 5517-5528
    • Senti, G.1    Swoboda, P.2
  • 39
    • 67649635952 scopus 로고    scopus 로고
    • Intraflagellar transport and the generation of dynamic, structurally and functionally diverse cilia
    • Silverman M.A., Leroux M.R. Intraflagellar transport and the generation of dynamic, structurally and functionally diverse cilia. Trends Cell Biol. 2009, 19:306-316.
    • (2009) Trends Cell Biol. , vol.19 , pp. 306-316
    • Silverman, M.A.1    Leroux, M.R.2
  • 40
    • 0033713259 scopus 로고    scopus 로고
    • The RFX-type transcription factor DAF-19 regulates sensory neuron cilium formation in C. elegans
    • Swoboda P., Adler H.T., Thomas J.H. The RFX-type transcription factor DAF-19 regulates sensory neuron cilium formation in C. elegans. Mol. Cell 2000, 5:411-421.
    • (2000) Mol. Cell , vol.5 , pp. 411-421
    • Swoboda, P.1    Adler, H.T.2    Thomas, J.H.3
  • 41
    • 41349098338 scopus 로고    scopus 로고
    • Evolution of eukaryotic transcription circuits
    • Tuch B.B., Li H., Johnson A.D. Evolution of eukaryotic transcription circuits. Science 2008, 319:1797-1799.
    • (2008) Science , vol.319 , pp. 1797-1799
    • Tuch, B.B.1    Li, H.2    Johnson, A.D.3
  • 42
    • 79251552287 scopus 로고    scopus 로고
    • Functional specialization of sensory cilia by an RFX transcription factor isoform
    • Wang J., Schwartz H.T., Barr M.M. Functional specialization of sensory cilia by an RFX transcription factor isoform. Genetics 2010, 186:1295-1307.
    • (2010) Genetics , vol.186 , pp. 1295-1307
    • Wang, J.1    Schwartz, H.T.2    Barr, M.M.3
  • 43
    • 48249132000 scopus 로고    scopus 로고
    • Functional redundancy of the B9 proteins and nephrocystins in Caenorhabditis elegans ciliogenesis
    • Williams C.L., Winkelbauer M.E., Schafer J.C., Michaud E.J., Yoder B.K. Functional redundancy of the B9 proteins and nephrocystins in Caenorhabditis elegans ciliogenesis. Mol. Biol. Cell 2008, 19:2154-2168.
    • (2008) Mol. Biol. Cell , vol.19 , pp. 2154-2168
    • Williams, C.L.1    Winkelbauer, M.E.2    Schafer, J.C.3    Michaud, E.J.4    Yoder, B.K.5
  • 44
    • 30544454640 scopus 로고    scopus 로고
    • The C. elegans homologs of nephrocystin-1 and nephrocystin-4 are cilia transition zone proteins involved in chemosensory perception
    • Winkelbauer M.E., Schafer J.C., Haycraft C.J., Swoboda P., Yoder B.K. The C. elegans homologs of nephrocystin-1 and nephrocystin-4 are cilia transition zone proteins involved in chemosensory perception. J. Cell Sci. 2005, 118:5575-5587.
    • (2005) J. Cell Sci. , vol.118 , pp. 5575-5587
    • Winkelbauer, M.E.1    Schafer, J.C.2    Haycraft, C.J.3    Swoboda, P.4    Yoder, B.K.5
  • 45
    • 33847057226 scopus 로고    scopus 로고
    • The evolutionary significance of cis-regulatory mutations
    • Wray G.A. The evolutionary significance of cis-regulatory mutations. Nat. Rev. Genet. 2007, 8:206-216.
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 206-216
    • Wray, G.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.