-
1
-
-
0003880161
-
-
Garland Science
-
Alberts B., Johnson A., Lewis J., Raff M., Roberts K., Walter P. Molecular Biology of the Cell 2007, Garland Science. fifth ed.
-
(2007)
Molecular Biology of the Cell
-
-
Alberts, B.1
Johnson, A.2
Lewis, J.3
Raff, M.4
Roberts, K.5
Walter, P.6
-
2
-
-
79955633333
-
Overcoming insulin resistance with ciliary neurotrophic factor
-
Allen T.L., Matthews V.B., Febbraio M.A. Overcoming insulin resistance with ciliary neurotrophic factor. Handb. Exp. Pharmacol. 2011, (203):179-199.
-
(2011)
Handb. Exp. Pharmacol.
, Issue.203
, pp. 179-199
-
-
Allen, T.L.1
Matthews, V.B.2
Febbraio, M.A.3
-
4
-
-
0037076322
-
Selection bias in gene extraction on the basis of microarray gene-expression data
-
Ambroise C., McLachlan G. Selection bias in gene extraction on the basis of microarray gene-expression data. Proc. Natl. Acad. Sci. U.S.A. 2002, 99(10):6562.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, Issue.10
, pp. 6562
-
-
Ambroise, C.1
McLachlan, G.2
-
6
-
-
19344374050
-
Similarities and differences in genome-wide expression data of six organisms
-
Bergmann S., Ihmels J., Barkai N. Similarities and differences in genome-wide expression data of six organisms. PLoS Biol. 2004, 2(1):E9.
-
(2004)
PLoS Biol.
, vol.2
, Issue.1
-
-
Bergmann, S.1
Ihmels, J.2
Barkai, N.3
-
7
-
-
28444453303
-
Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data
-
Boyer F., Morgat A., Labarre L., Pothier J., Viari A. Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data. Bioinformatics 2005, 21(23):4209-4215.
-
(2005)
Bioinformatics
, vol.21
, Issue.23
, pp. 4209-4215
-
-
Boyer, F.1
Morgat, A.2
Labarre, L.3
Pothier, J.4
Viari, A.5
-
8
-
-
38449101120
-
Integration of biological networks and gene expression data using cytoscape
-
Cline M.S., Smoot M., Cerami E., Kuchinsky A., Landys N., Workman C., Christmas R., Avila-Campilo I., Creech M., Gross B., Hanspers K., Isserlin R., Kelley R., Killcoyne S., Lotia S., Maere S., Morris J., Ono K., Pavlovic V., Pico A.R., Vailaya A., Wang P.-L., Adler A., Conklin B.R., Hood L., Kuiper M., Sander C., Schmulevich I., Schwikowski B., Warner G.J., Ideker T., Bader G.D. Integration of biological networks and gene expression data using cytoscape. Nat. Protocols 2007, 2(10):2366-2382.
-
(2007)
Nat. Protocols
, vol.2
, Issue.10
, pp. 2366-2382
-
-
Cline, M.S.1
Smoot, M.2
Cerami, E.3
Kuchinsky, A.4
Landys, N.5
Workman, C.6
Christmas, R.7
Avila-Campilo, I.8
Creech, M.9
Gross, B.10
Hanspers, K.11
Isserlin, R.12
Kelley, R.13
Killcoyne, S.14
Lotia, S.15
Maere, S.16
Morris, J.17
Ono, K.18
Pavlovic, V.19
Pico, A.R.20
Vailaya, A.21
Wang, P.-L.22
Adler, A.23
Conklin, B.R.24
Hood, L.25
Kuiper, M.26
Sander, C.27
Schmulevich, I.28
Schwikowski, B.29
Warner, G.J.30
Ideker, T.31
Bader, G.D.32
more..
-
9
-
-
34249753618
-
Support-vector networks
-
Cortes C., Vapnik V. Support-vector networks. Mach. Learn. 1995, 20(3):273-297.
-
(1995)
Mach. Learn.
, vol.20
, Issue.3
, pp. 273-297
-
-
Cortes, C.1
Vapnik, V.2
-
10
-
-
43349094507
-
The igraph software package for complex network research
-
Csardi G., Nepusz T. The igraph software package for complex network research. InterJ. Complex Syst. 2006, 1695.
-
(2006)
InterJ. Complex Syst.
, pp. 1695
-
-
Csardi, G.1
Nepusz, T.2
-
11
-
-
77958091914
-
A history of graph entropy measures
-
Dehmer M., Mowshowitz A. A history of graph entropy measures. Inf. Sci. 2011, 1:57-78.
-
(2011)
Inf. Sci.
, vol.1
, pp. 57-78
-
-
Dehmer, M.1
Mowshowitz, A.2
-
12
-
-
77953583663
-
Novel topological descriptors for analyzing biological networks
-
BMC Struct. Biol. 10 (18).
-
Dehmer, M., Barbarini, N., Varmuza, K., Graber, A., 2010. Novel topological descriptors for analyzing biological networks. BMC Struct. Biol. 10 (18).
-
(2010)
-
-
Dehmer, M.1
Barbarini, N.2
Varmuza, K.3
Graber, A.4
-
14
-
-
79960325408
-
Networks for systems biology: conceptual connection of data and function
-
Emmert-Streib F., Dehmer M. Networks for systems biology: conceptual connection of data and function. IET Syst. Biol. 2011, 5(3):185-207.
-
(2011)
IET Syst. Biol.
, vol.5
, Issue.3
, pp. 185-207
-
-
Emmert-Streib, F.1
Dehmer, M.2
-
15
-
-
0033764169
-
The small world of metabolism
-
Fell D.A., Wagner A. The small world of metabolism. Nat. Biotechnol. 2000, 18(11):1121-1122.
-
(2000)
Nat. Biotechnol.
, vol.18
, Issue.11
, pp. 1121-1122
-
-
Fell, D.A.1
Wagner, A.2
-
16
-
-
78650676139
-
Metabolomic correlation-network modules in arabidopsis based on a graph-clustering approach
-
Fukushima A., Kusano M., Redestig H., Arita M., Saito K. Metabolomic correlation-network modules in arabidopsis based on a graph-clustering approach. BMC Syst. Biol. 2011, 5:1.
-
(2011)
BMC Syst. Biol.
, vol.5
, pp. 1
-
-
Fukushima, A.1
Kusano, M.2
Redestig, H.3
Arita, M.4
Saito, K.5
-
17
-
-
84873074611
-
-
Graph: A Package to Handle Graph Data Structures, R Package Version 1.28.0 〈〉
-
Gentleman, R., Whalen, E., Huber, W., Falcon, S., 2010. Graph: A Package to Handle Graph Data Structures, R Package Version 1.28.0 http://CRAN.R-project.org/package=graph.
-
(2010)
-
-
Gentleman, R.1
Whalen, E.2
Huber, W.3
Falcon, S.4
-
18
-
-
0003684449
-
-
Springer, Berlin, New York
-
Hastie T., Tibshirani R., Friedman J.H. The Elements of Statistical Learning 2001, Springer, Berlin, New York.
-
(2001)
The Elements of Statistical Learning
-
-
Hastie, T.1
Tibshirani, R.2
Friedman, J.H.3
-
21
-
-
0034609791
-
The large-scale organization of metabolic networks
-
Jeong H., Tombor B., Albert R., Oltvai Z.N., Barabsi A.L. The large-scale organization of metabolic networks. Nature 2000, 407(6804):651-654.
-
(2000)
Nature
, vol.407
, Issue.6804
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Oltvai, Z.N.4
Barabsi, A.L.5
-
25
-
-
0344686524
-
Discriminating tests of information and topological indices. Animals and trees
-
Konstantinova E.V., Vidyuk M.V. Discriminating tests of information and topological indices. Animals and trees. J. Chem. Inf. Comput. Sci. 2003, 43(6):1860-1871.
-
(2003)
J. Chem. Inf. Comput. Sci.
, vol.43
, Issue.6
, pp. 1860-1871
-
-
Konstantinova, E.V.1
Vidyuk, M.V.2
-
26
-
-
34548419326
-
Ranking of network elements based on functional substructures
-
Koschützki D., Schwöbbermeyer H., Schreiber F. Ranking of network elements based on functional substructures. J. Theor. Biol. 2007, 248(3):471-479.
-
(2007)
J. Theor. Biol.
, vol.248
, Issue.3
, pp. 471-479
-
-
Koschützki, D.1
Schwöbbermeyer, H.2
Schreiber, F.3
-
27
-
-
84873075915
-
-
contributions from Jed Wing, Weston, S., Williams, A., Keefer, C., Engelhardt, A., 2011. Caret: Classification and Regression Training, R Package Version 4.91
-
Kuhn, M. contributions from Jed Wing, Weston, S., Williams, A., Keefer, C., Engelhardt, A., 2011. Caret: Classification and Regression Training, R Package Version 4.91. http://CRAN.R-project.org/package=caret.
-
-
-
Kuhn, M.1
-
28
-
-
78449279678
-
Study of plasma metabolic profiling and biomarkers of chronic unpredictable mild stress rats based on gas chromatography/mass spectrometry
-
Li Z.-Y., Zheng X.-Y., Gao X.-X., Zhou Y.-Z., Sun H.-F., Zhang L.-Z., Guo X.-Q., Du G.-H., Qin X.-M. Study of plasma metabolic profiling and biomarkers of chronic unpredictable mild stress rats based on gas chromatography/mass spectrometry. Rapid Commun. Mass Spectrom. 2010, 24(24):3539-3546.
-
(2010)
Rapid Commun. Mass Spectrom.
, vol.24
, Issue.24
, pp. 3539-3546
-
-
Li, Z.-Y.1
Zheng, X.-Y.2
Gao, X.-X.3
Zhou, Y.-Z.4
Sun, H.-F.5
Zhang, L.-Z.6
Guo, X.-Q.7
Du, G.-H.8
Qin, X.-M.9
-
29
-
-
34547837407
-
Neuronal histamine and its receptors in obesity and diabetes
-
Masaki T., Yoshimatsu H. Neuronal histamine and its receptors in obesity and diabetes. Curr. Diabetes Rev. 2007, 3(3):212-216.
-
(2007)
Curr. Diabetes Rev.
, vol.3
, Issue.3
, pp. 212-216
-
-
Masaki, T.1
Yoshimatsu, H.2
-
30
-
-
79551718675
-
Tumour xenograft detection through quantitative analysis of the metabolic profile of urine in mice
-
Moroz J., Turner J., Slupsky C., Fallone G., Syme A. Tumour xenograft detection through quantitative analysis of the metabolic profile of urine in mice. Phys. Med. Biol. 2011, 56(3):535-556.
-
(2011)
Phys. Med. Biol.
, vol.56
, Issue.3
, pp. 535-556
-
-
Moroz, J.1
Turner, J.2
Slupsky, C.3
Fallone, G.4
Syme, A.5
-
31
-
-
4744355192
-
Enzymes of arginine metabolism
-
(Discussion 2765S-2767S)
-
Morris S.M. Enzymes of arginine metabolism. J. Nutr. 2004, 134(10 Suppl):2743S-2747S. (Discussion 2765S-2767S).
-
(2004)
J. Nutr.
, vol.134
, Issue.10 SUPPL.
-
-
Morris, S.M.1
-
32
-
-
80053904998
-
A network-based approach to classify the three domains of life
-
Müller L.A.J., Kugler K.G., Netzer M., Graber A., Dehmer M. A network-based approach to classify the three domains of life. Biol. Direct. 2011, 6:53.
-
(2011)
Biol. Direct.
, vol.6
, pp. 53
-
-
Müller, L.A.J.1
Kugler, K.G.2
Netzer, M.3
Graber, A.4
Dehmer, M.5
-
33
-
-
78650544547
-
QuACN: an R package for analyzing complex biological networks quantitatively
-
Müller L.A.J., Kugler K.G., Dander A., Graber A., Dehmer M. QuACN: an R package for analyzing complex biological networks quantitatively. Bioinformatics 2011, 27(1):140-141.
-
(2011)
Bioinformatics
, vol.27
, Issue.1
, pp. 140-141
-
-
Müller, L.A.J.1
Kugler, K.G.2
Dander, A.3
Graber, A.4
Dehmer, M.5
-
34
-
-
63549151475
-
A new ensemble-based algorithm for identifying breath gas marker candidates in liver disease using ion molecule reaction mass spectrometry
-
Netzer M., Millonig G., Osl M., Pfeifer B., Praun S., Villinger J., Vogel W., Baumgartner C. A new ensemble-based algorithm for identifying breath gas marker candidates in liver disease using ion molecule reaction mass spectrometry. Bioinformatics 2009, 25(7):941-947.
-
(2009)
Bioinformatics
, vol.25
, Issue.7
, pp. 941-947
-
-
Netzer, M.1
Millonig, G.2
Osl, M.3
Pfeifer, B.4
Praun, S.5
Villinger, J.6
Vogel, W.7
Baumgartner, C.8
-
35
-
-
84870542109
-
Profiling the human response to physical exercise: a computational strategy for the identification and kinetic analysis of metabolic biomarkers
-
Netzer M., Weinberger K.M., Handler M., Seger M., Fang X., Kugler K.G., Graber A., Baumgartner C. Profiling the human response to physical exercise: a computational strategy for the identification and kinetic analysis of metabolic biomarkers. J. Clin. Bioinf. 2011, 1(1):34.
-
(2011)
J. Clin. Bioinf.
, vol.1
, Issue.1
, pp. 34
-
-
Netzer, M.1
Weinberger, K.M.2
Handler, M.3
Seger, M.4
Fang, X.5
Kugler, K.G.6
Graber, A.7
Baumgartner, C.8
-
36
-
-
0036482702
-
Arginine catabolism in lactating porcine mammary tissue
-
O'Quinn P.R., Knabe D.A., Wu G. Arginine catabolism in lactating porcine mammary tissue. J. Anim. Sci. 2002, 80(2):467-474.
-
(2002)
J. Anim. Sci.
, vol.80
, Issue.2
, pp. 467-474
-
-
O'Quinn, P.R.1
Knabe, D.A.2
Wu, G.3
-
37
-
-
57249114509
-
A new rule-based algorithm for identifying metabolic markers in prostate cancer using tandem mass spectrometry
-
Osl M., Dreiseitl S., Pfeifer B., Weinberger K., Klocker H., Bartsch G., Schäfer G., Tilg B., Graber A., Baumgartner C. A new rule-based algorithm for identifying metabolic markers in prostate cancer using tandem mass spectrometry. Bioinformatics 2008, 24(24):2908-2914.
-
(2008)
Bioinformatics
, vol.24
, Issue.24
, pp. 2908-2914
-
-
Osl, M.1
Dreiseitl, S.2
Pfeifer, B.3
Weinberger, K.4
Klocker, H.5
Bartsch, G.6
Schäfer, G.7
Tilg, B.8
Graber, A.9
Baumgartner, C.10
-
38
-
-
67649306223
-
Demoting redundant features to improve the discriminatory ability in cancer data
-
Osl M., Dreiseitl S., Cerqueira F., Netzer M., Pfeifer B., Baumgartner C. Demoting redundant features to improve the discriminatory ability in cancer data. J. Biomed. Inf. 2009, 42(4):721-725.
-
(2009)
J. Biomed. Inf.
, vol.42
, Issue.4
, pp. 721-725
-
-
Osl, M.1
Dreiseitl, S.2
Cerqueira, F.3
Netzer, M.4
Pfeifer, B.5
Baumgartner, C.6
-
39
-
-
0035999977
-
A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments
-
Pan W. A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments. Bioinformatics 2002, 18(4):546-554.
-
(2002)
Bioinformatics
, vol.18
, Issue.4
, pp. 546-554
-
-
Pan, W.1
-
40
-
-
65449162644
-
A survey of visualization tools for biological network analysis
-
Pavlopoulos G.A., Wegener A.-L., Schneider R. A survey of visualization tools for biological network analysis. BioData Min. 2008, 1:12.
-
(2008)
BioData Min.
, vol.1
, pp. 12
-
-
Pavlopoulos, G.A.1
Wegener, A.-L.2
Schneider, R.3
-
41
-
-
84873066193
-
-
R Development Core Team, R: A Language and Environment for Statistical Computing, R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0
-
R Development Core Team, 2011. R: A Language and Environment for Statistical Computing, R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0 http://www.R-project.org.
-
(2011)
-
-
-
42
-
-
79952502199
-
Metabolomics: a novel approach to early and noninvasive prostate cancer detection
-
Roberts M.J., Schirra H.J., Lavin M.F., Gardiner R.A. Metabolomics: a novel approach to early and noninvasive prostate cancer detection. Korean J. Urol. 2011, 52(2):79-89.
-
(2011)
Korean J. Urol.
, vol.52
, Issue.2
, pp. 79-89
-
-
Roberts, M.J.1
Schirra, H.J.2
Lavin, M.F.3
Gardiner, R.A.4
-
43
-
-
35748932917
-
A review of feature selection techniques in bioinformatics
-
Saeys Y., Inza I., Larraaga P. A review of feature selection techniques in bioinformatics. Bioinformatics 2007, 23:2507-2517.
-
(2007)
Bioinformatics
, vol.23
, pp. 2507-2517
-
-
Saeys, Y.1
Inza, I.2
Larraaga, P.3
-
44
-
-
0014939174
-
Adaptive responses of mammalian histidine-degrading enzymes
-
Schirmer M.D., Harper A.E. Adaptive responses of mammalian histidine-degrading enzymes. J. Biol. Chem. 1970, 245(5):1204-1211.
-
(1970)
J. Biol. Chem.
, vol.245
, Issue.5
, pp. 1204-1211
-
-
Schirmer, M.D.1
Harper, A.E.2
-
45
-
-
2342470817
-
Trends in obesity and energy supply in the who Monica project
-
Silventoinen K., Sans S., Tolonen H., Monterde D., Kuulasmaa K., Kesteloot H., Tuomilehto J., Project W.H.O.M. Trends in obesity and energy supply in the who Monica project. Int. J. Obes. Relat. Metab. Disord. 2004, 28(5):710-718.
-
(2004)
Int. J. Obes. Relat. Metab. Disord.
, vol.28
, Issue.5
, pp. 710-718
-
-
Silventoinen, K.1
Sans, S.2
Tolonen, H.3
Monterde, D.4
Kuulasmaa, K.5
Kesteloot, H.6
Tuomilehto, J.7
Project, W.H.O.M.8
-
48
-
-
55349138431
-
L-ornithine supplementation attenuates physical fatigue in healthy volunteers by modulating lipid and amino acid metabolism
-
Sugino T., Shirai T., Kajimoto Y., Kajimoto O. L-ornithine supplementation attenuates physical fatigue in healthy volunteers by modulating lipid and amino acid metabolism. Nutr. Res. 2008, 28(11):738-743.
-
(2008)
Nutr. Res.
, vol.28
, Issue.11
, pp. 738-743
-
-
Sugino, T.1
Shirai, T.2
Kajimoto, Y.3
Kajimoto, O.4
-
49
-
-
77949267650
-
Insulin resistance is associated with a metabolic profile of altered protein metabolism in Chinese and Asian-Indian men
-
Tai E.S., Tan M.L.S., Stevens R.D., Low Y.L., Muehlbauer M.J., Goh D.L.M., Ilkayeva O.R., Wenner B.R., Bain J.R., Lee J.J.M., Lim S.C., Khoo C.M., Shah S.H., Newgard C.B. Insulin resistance is associated with a metabolic profile of altered protein metabolism in Chinese and Asian-Indian men. Diabetologia 2010, 53(4):757-767.
-
(2010)
Diabetologia
, vol.53
, Issue.4
, pp. 757-767
-
-
Tai, E.S.1
Tan, M.L.S.2
Stevens, R.D.3
Low, Y.L.4
Muehlbauer, M.J.5
Goh, D.L.M.6
Ilkayeva, O.R.7
Wenner, B.R.8
Bain, J.R.9
Lee, J.J.M.10
Lim, S.C.11
Khoo, C.M.12
Shah, S.H.13
Newgard, C.B.14
-
52
-
-
80052076282
-
The histamine h4 receptor: targeting inflammatory disorders
-
Walter M., Kottke T., Stark H. The histamine h4 receptor: targeting inflammatory disorders. Eur. J. Pharmacol. 2011, 668(1-2):1-5.
-
(2011)
Eur. J. Pharmacol.
, vol.668
, Issue.1-2
, pp. 1-5
-
-
Walter, M.1
Kottke, T.2
Stark, H.3
-
53
-
-
79953737332
-
Metabolite profiles and the risk of developing diabetes
-
Wang T.J., Larson M.G., Vasan R.S., Cheng S., Rhee E.P., McCabe E., Lewis G.D., Fox C.S., Jacques P.F., Fernandez C., O'Donnell C.J., Carr S.A., Mootha V.K., Florez J.C., Souza A., Melander O., Clish C.B., Gerszten R.E. Metabolite profiles and the risk of developing diabetes. Nat. Med. 2011, 17:448-453.
-
(2011)
Nat. Med.
, vol.17
, pp. 448-453
-
-
Wang, T.J.1
Larson, M.G.2
Vasan, R.S.3
Cheng, S.4
Rhee, E.P.5
McCabe, E.6
Lewis, G.D.7
Fox, C.S.8
Jacques, P.F.9
Fernandez, C.10
O'Donnell, C.J.11
Carr, S.A.12
Mootha, V.K.13
Florez, J.C.14
Souza, A.15
Melander, O.16
Clish, C.B.17
Gerszten, R.E.18
-
54
-
-
52349089218
-
Metabolomics in diagnosing metabolic diseases
-
Weinberger K.M. Metabolomics in diagnosing metabolic diseases. Ther. Umsch. 2008, 65(9):487-491.
-
(2008)
Ther. Umsch.
, vol.65
, Issue.9
, pp. 487-491
-
-
Weinberger, K.M.1
-
55
-
-
67650388695
-
Metabolomic profiling of human urine in hepatocellular carcinoma patients using gas chromatography/mass spectrometry
-
Wu H., Xue R., Dong L., Liu T., Deng C., Zeng H., Shen X. Metabolomic profiling of human urine in hepatocellular carcinoma patients using gas chromatography/mass spectrometry. Anal. Chim. Acta 2009, 648(1):98-104.
-
(2009)
Anal. Chim. Acta
, vol.648
, Issue.1
, pp. 98-104
-
-
Wu, H.1
Xue, R.2
Dong, L.3
Liu, T.4
Deng, C.5
Zeng, H.6
Shen, X.7
-
56
-
-
34249680883
-
Increasing dietary leucine intake reduces diet-induced obesity and improves glucose and cholesterol metabolism in mice via multimechanisms
-
Zhang Y., Guo K., LeBlanc R.E., Loh D., Schwartz G.J., Yu Y.-H. Increasing dietary leucine intake reduces diet-induced obesity and improves glucose and cholesterol metabolism in mice via multimechanisms. Diabetes 2007, 56(6):1647-1654.
-
(2007)
Diabetes
, vol.56
, Issue.6
, pp. 1647-1654
-
-
Zhang, Y.1
Guo, K.2
LeBlanc, R.E.3
Loh, D.4
Schwartz, G.J.5
Yu, Y.-H.6
|