Coreference based event-argument relation extraction on biomedical text

Journal of Biomedical Semantics

Volumn 2, Issue 5, 2011, Pages

  Yoshikawa, Katsumasa ^a   Riedel, Sebastian ^b   Hirao, Tsutomu ^c   Asahara, Masayuki ^a   Matsumoto, Yuji ^a  

^a NARA INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

^b UNIVERSITY OF MASSACHUSETTS   (United States)

^c NTT Communication Science Laboratories   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84864035017     PISSN: None     EISSN: 20411480     Source Type: Journal    
DOI: 10.1186/2041-1480-2-S5-S6     Document Type: Article

References (15)

1. Kim JD, Ohta T, Tsujii J: Corpus annotation for mining biomedical events from literature. BMC Bioinformatics. 2008, 9: 10+-[ http://dx.doi.org/10.1186/1471-2105-9-10 ]
2. Kim JD, Ohta T, Pyysalo S, Kano Y, Tsujii J: Overview of BioNLP'09 shared task on event extraction. BioNLP '09: Proceedings of the Workshop on BioNLP. 2009, Boulder, CO, USA: Association for Computational Linguistics, 1-9.
3. Björne J, Heimonen J, Ginter F, Airola A, Pahikkala T, Salakoski T: Extracting complex biological events with rich graph-based feature sets. BioNLP '09: Proceedings of the Workshop on BioNLP. 2009, Boulder, CO, USA: Association for Computational Linguistics, 10-18.
4. Buyko E, Faessler E, Wermter J, Hahn U: Event extraction from trimmed dependency graphs. BioNLP '09: Proceedings of the Workshop on BioNLP. 2009, Boulder, CO, USA: Association for Computational Linguistics, 19-27.
5. Poon H, Vanderwende L: Joint Inference for Knowledge Extraction from Biomedical Literature. Human Language Technologies: The 2010 Annual Conference of the North American Chapter of the Association for Computational Linguistics. 2010, Los Angeles, California: Association for Computational Linguistics, 813-821. [ http://www.aclweb.org/anthology/N10-1123 ]
6. Grosz BJ, Weinstein S, Joshi AK: Centering: A Framework for Modeling the Local Coherence Of Discourse. Computational Linguistics. 1995, 21: 203-225.
7. Riedel S, Chun HW, Takagi T, Tsujii J: A Markov logic approach to bio-molecular event extraction. BioNLP '09: Proceedings of the Workshop on BioNLP. 2009, Boulder, CO, USA: Association for Computational Linguistics, 41-49.
8. Taira H, Fujita S, Nagata M: A Japanese predicate argument structure analysis using decision lists. EMNLP '08: Proceedings of the Conference on Empirical Methods in Natural Language Processing. 2008, Honolulu, HI, USA: Association for Computational Linguistics, 523-532.
9. Richardson M, Domingos P: Markov logic networks. Machine Learning. 2006, 62 (1-2): 107-136. 10.1007/s10994-006-5833-1.
10. Soon WM, Ng HT, Lim DCY: A machine learning approach to coreference resolution of noun phrases. Computational Linguistics. 2001, 27 (4): 521-544. 10.1162/089120101753342653.
11. Yang X, Zhou G, Su J, Tan CL: Improving noun phrase coreference resolution by matching strings. Proceedings of 1st Internation Joint Conference of Natural Language Processing. 2004, 326-333.
12. Su J, Yang X, Hong H, Tateisi Y, Tsujii J: Coreference Resolution in Biomedical Texts: a Machine Learning Approach. Ontologies and Text Mining for Life Sciences: Current Status and Future Perspectives, no. 08131 in Dagstuhl Seminar Proceedings. Edited by: Ashburner M, Leser U, Rebholz-Schuhmann D, Dagstuhl. 2008, Germany: Schloss Dagstuhl -Leibniz-Zentrum fuer Informatik, Germany, [ http://drops.dagstuhl.de/opus/volltexte/2008/1522 ]
13. McClosky D, Charniak E: Self-training for biomedical parsing. HLT '08: Proceedings of the 46th Annual Meeting of the Association for Computational Linguistics on Human Language Technologies. 2008, Morristown, NJ, USA: Association for Computational Linguistics, 101-104.
14. Riedel S: Improving the Accuracy and Efficiency of MAP Inference for Markov Logic. Proceedings of UAI 2008. 2008
15. Chambers N, Jurafsky D: Unsupervised Learning of Narrative Schemas and their Participants. Proceedings of the Joint Conference of the 47th Annual Meeting of the ACL and the 4th International Joint Conference on Natural Language Processing of the AFNLP. 2009, Suntec, Singapore: Association for Computational Linguistics, 602-610. [ http://www.aclweb.org/anthology/P/P09/P09-1068 ]