A Markov Logic Approach to Bio-Molecular Event Extraction

2009 Biomedical Natural Language Processing Workshop, BioNLP 2009 - Companion Volume: Shared Task on Event Extraction

Volumn , Issue , 2009, Pages 41-49

  Riedel, Sebastian ^a,b   Chun, Hong Woo ^a,b   Takagi, Toshihisa ^a,b   Tsujii, Jun'ichi ^b,c  

^a Research Organization of Information and Systems   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

^c UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER CIRCUITS; EXTRACTION; INFERENCE ENGINES; NATURAL LANGUAGE PROCESSING SYSTEMS;

BIO-MOLECULAR; DESIGN DECISIONS; EVENTS EXTRACTIONS; JOINT MODELS; JOINT PROBABILISTIC; LEARN+; LOCAL CLASSIFIER; MARKOV LOGIC; MOLECULAR EVENTS; PROBABILISTIC MODELS;

MARKOV PROCESSES;

EID: 85017485612     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (11)

1. Charniak, Eugene and Mark Johnson. 2005. Coarse-to-_ne n-best parsing and maxent discriminative reranking. In Proceedings of the 43rd Annual Meeting of the Association for Computational Linguistics (ACL' 05). pages 173_180.
2. Clark, Stephen and James R. Curran. 2007. Wide-coverage e_cient statistical parsing with ccg and log-linear models. Comput. Lin-guist. 33(4):493_552.
3. Crammer, Koby and Yoram Singer. 2003. Ultraconservative online algorithms for multiclass problems. Journal of Machine Learning Re-search 3:951_991.
4. Kim, Jin D., Tomoko Ohta, and Jun'ichi Tsujii. 2008. Corpus annotation for mining biomedical events from literature. BMC Bioinformat-ics 9(1).
5. Kim, Jin-Dong, Tomoko Ohta, Sampo Pyysalo, Yoshinobu Kano, and Jun'ichi Tsujii. 2009. Overview of bionlp'09 shared task on event extraction. In Proceedings of Natural Language Processing in Biomedicine (BioNLP) NAACL 2009 Workshop. To appear. McClosky, David and Eugene Charniak. 2008.
6. Self-training for biomedical parsing. In Proceedings of the 46rd Annual Meeting of the Association for Computational Linguistics (ACL' 08).
7. Meza-Ruiz, Ivan and Sebastian Riedel. 2009. Jointly identifying predicates, arguments and senses using markov logic. In Joint Human Language Technology Conference/Annual Meeting of the North American Chapter of the Association for Computational Linguistics (HLT-NAACL '09).
8. Richardson, Matt and Pedro Domingos. 2006. Markov logic networks. Machine Learning 62:107_136.
9. Riedel, Sebastian. 2008. Improving the accuracy and e_ciency of map inference for markov logic. In Proceedings of the 24th Annual Con-ference on Uncertainty in AI (UAI '08).
10. Riedel, Sebastian and Ivan Meza-Ruiz. 2008. Collective semantic role labelling with markov logic. In Proceedings of the 12th Conference on Computational Natural Language Learning (CoNLL' 08). pages 193_197.
11. Surdeanu, Mihai, Richard Johansson, Adam Meyers, Lluís Màrquez, and Joakim Nivre. 2008. The CoNLL-2008 shared task on joint parsing of syntactic and semantic dependencies. In Proceedings of the 12th Conference on Computational Natural Language Learning (CoNLL-2008).