Anaerobic metabolism of indoleacetate

Journal of Bacteriology

Volumn 194, Issue 11, 2012, Pages 2894-2903

  Ebenau Jehle, Christa ^a   Thomas, Markus ^a   Scharf, Gernot ^a   Kockelkorn, Daniel ^a   Knapp, Bettina ^a   Schühle, Karola ^b   Heider, Johann ^b   Fuchs, Georg ^a  

^a UNIVERSITY OF FREIBURG   (Germany)

^b PHILIPPS UNIVERSITY MARBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

3 HYDROXYACYL COENZYME A DEHYDROGENASE; ACETYL COENZYME A ACYLTRANSFERASE; ACYL COENZYME A DEHYDROGENASE; ALDEHYDE DEHYDROGENASE; ANTHRANILIC ACID; BENZOIC ACID; COENZYME A TRANSFERASE; DIHYDROPYRIMIDINASE; DYE; ENOYL COENZYME A HYDRATASE; INDOLEACETIC ACID; LONG CHAIN FATTY ACID COENZYME A LIGASE; MUTASE; NICOTINAMIDE ADENINE DINUCLEOTIDE; PROTEIN GNTR; PROTEOME; REGULATOR PROTEIN; UNCLASSIFIED DRUG; XANTHINE OXIDASE;

ANAEROBIC METABOLISM; ARTICLE; AZOARCUS; AZOARCUS EVANSII; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL METABOLISM; BACTERIAL STRAIN; ENZYME ACTIVITY; GENE CLUSTER; HYDROXYLATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RING OPENING;

ANAEROBIOSIS; AZOARCUS; BACTERIAL PROTEINS; INDOLEACETIC ACIDS; METABOLIC NETWORKS AND PATHWAYS; MOLECULAR SEQUENCE DATA;

AZOARCUS EVANSII;

EID: 84864020849     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00250-12     Document Type: Article

References (49)

1. Anders H, Kaetzke A, Kämpfer P, Ludwig W, Fuchs G. 1995. Taxonomic position of aromatic-degrading denitrifying pseudomonad strains K 172 and KB 740 and their description as new members of the genera Thauera, as Thauera aromatica sp. nov., and Azoarcus evansii sp. nov., respectively, members of the beta subclass of the Proteobacteria. Int. J. Syst. Bacteriol. 45:327-333.
2. Anderson I, et al. 2011. Complete genome sequence of Ferroglobus placidus AEDII12DO. Stand. Genomic Sci. 5:50-60.
3. Bak F, Widdel F. 1986. Anaerobic degradation of indolic compounds by sulfate-reducing enrichment cultures, and description of Desulfobacterium indolicum gen. nov., sp. nov. Arch. Microbiol. 146:170 -176.
4. Balba M, Evans W. 1980. Methanogenic fermentation of the naturally occurring aromatic amino acids by a microbial consortium. Biochem. Soc. Trans. 8:625- 627.
5. Barker H. 1981. Amino acid degradation by anaerobic bacteria. Annu. Rev. Biochem. 50:23- 40.
6. Berry D, Francis A, Bollag J. 1987. Microbial metabolism of homocyclic and heterocyclic aromatic compounds under anaerobic conditions. Microbiol. Rev. 51:43-59.
7. Berry D, Madsen E, Bollag J. 1987. Conversion of indole to oxindole under methanogenic conditions. Appl. Environ. Microbiol. 53:180 - 182.
8. Boll M, Fuchs G. 1995. Benzoyl-coenzyme A reductase (dearomatizing), a key enzyme of anaerobic aromatic metabolism. ATP dependence of the reaction, purification and some properties of the enzyme from Thauera aromatica strain. K172. Eur. J. Biochem. 234:921-933.
9. Boll M, et al. 2000. Nonaromatic products from anoxic conversion of benzoyl-CoA with benzoyl-CoA reductase and cyclohexa-1,5-diene-1-carbonyl-CoA hydratase. J. Biol. Chem. 275:21889 -21895.
10. Bradford MM. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248 -254.
11. Braun K, Gibson D. 1984. Anaerobic degradation of 2-aminobenzoate (anthranilic acid) by denitrifying bacteria. Appl. Environ. Microbiol. 48: 102-107.
12. Callaghan AV, et al. 2012. The genome sequence of Desulfatibacillum alkenivorans AK-01: a blueprint for anaerobic alkane oxidation. Environ. Microbiol. 14:101-113.
13. DiDonato RJ, Jr, et al. 2010. Genome sequence of the deltaproteobacterial strain NaphS2 and analysis of differential gene expression during anaerobic growth on naphthalene. PLoS One 5:e14072.
14. + oxidoreductase in Azoarcus evansii: properties and function in electron transfer reactions in aromatic ring reduction. J. Bacteriol. 185:6119 - 6129.
15. Egland PG, Pelletier DA, Dispensa M, Gibson J, Harwood CS. 1997. A cluster of bacterial genes for anaerobic benzene ring biodegradation. Proc. Natl. Acad. Sci. U. S. A. 94:6484-6489.
16. Erb TJ, Brecht V, Fuchs G, Müller M, Alber BE. 2009. Carboxylation mechanism and stereochemistry of crotonyl-CoA carboxylase/reductase, a carboxylating enoyl-thioester reductase. Proc. Natl. Acad. Sci. U. S. A. 106:8871- 8876.
17. Fetzner S. 2000. Enzymes involved in the aerobic bacterial degradation of N-heteroaromatic compounds: molybdenum hydroxylases and ringopening 2,4-dioxygenases. Naturwissenschaften 87:59-69.
18. Görg A, Postel W, Domscheit A, Günther S. 1988. Two-dimensional electrophoresis with immobilized pH gradients of leaf proteins from barley (Hordeum vulgare): method, reproducibility and genetic aspects. Electrophoresis 9:681- 692.
19. Grundmann O, et al. 2008. Genes encoding the candidate enzyme for anaerobic activation of n-alkanes in the denitrifying bacterium, strain HxN1. Environ. Microbiol. 10:376 -385.
20. Gu J, Berry D. 1991. Degradation of substituted indoles by an indoledegrading methanogenic consortium. Appl. Environ. Microbiol. 57: 2622-2627.
21. Hayaishi O. 1994. Tryptophan, oxygen, and sleep. Annu. Rev. Biochem. 63:1-24.
22. Heider J. 2001. A new family of CoA-transferases. FEBS Lett. 509:345-349.
23. Heider J, et al. 1998. Differential induction of enzymes involved in anaerobic metabolism of aromatic compounds in the denitrifying bacterium Thauera aromatica. Arch. Microbiol. 170:120 -131.
24. Heider J, Fuchs G. 1997. Anaerobic metabolism of aromatic compounds. Eur. J. Biochem. 243:577-596.
25. Hille R. 2005. Molybdenum-containing hydroxylases. Arch. Biochem. Biophys. 433:107-116.
26. Holmes DE, Risso C, Smith JA, Lovley DR. 2012. Genome-scale analysis of anaerobic benzoate and phenol metabolism in the hyperthermophilic archaeon Ferroglobus placidus. ISME J. 6:146 -157.
27. Honeyfield DC, Carlson JR. 1990. Assay for the enzymatic conversion of indoleacetic acid to 3-methylindole in a ruminal Lactobacillus species. Appl. Environ. Microbiol. 56:724 -729.
28. Jobst B, Schühle K, Linne U, Heider J. 2010. ATP-dependent carboxylation of acetophenone by a novel type of carboxylase. J. Bacteriol. 192: 1387-1394.
29. Kaiser J, Feng Y, Bollag J. 1996. Microbial metabolism of pyridine, quinoline, acridine, and their derivatives under aerobic and anaerobic conditions. Microbiol. Rev. 60:483- 498.
30. Koch J, Fuchs G. 1992. Enzymatic reduction of benzoyl-CoA to alicyclic compounds, a key reaction in anaerobic aromatic metabolism. Eur. J. Biochem. 205:195-202.
31. Koenig K, Andreesen J. 1992. Aerober und anaerober Abbau von heterozyklischen, aromatischen Verbindungen durch Bakterien. BioEngineering 8:78-84.
32. Kohda C, Ando T, Nakai Y. 1997. Isolation and characterization of anaerobic indole- and skatole-degrading bacteria from composting animal wastes. J. Gen. Appl. Microbiol. 43:249 -255.
33. Laemmli UK. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
34. Leuthner B, Heider J. 2000. Anaerobic toluene catabolism of Thauera aromatica: the bbs operon codes for enzymes of beta oxidation of the intermediate benzylsuccinate. J. Bacteriol. 182:272-277.
35. Lochmeyer C, Koch J, Fuchs G. 1992. Anaerobic degradation of 2-aminobenzoic acid (anthranilic acid) via benzoyl-coenzyme A (CoA) and cyclohex-1-enecarboxyl-CoA in a denitrifying bacterium. J. Bacteriol. 174: 3621-3628.
36. Madsen E, Bollag J. 1989. Pathway of indole metabolism by a denitrifying microbial community. Arch. Microbiol. 151:71-76.
37. Madsen E, Francis A, Bollag J. 1988. Environmental factors affecting indole metabolism under anaerobic conditions. Appl. Environ. Microbiol. 54:74 -78.
38. Merck. 1980. Anfärbereagenzien für Dünnschicht und Papier-Chromatographie. Merck, Darmstadt, Germany.
39. Ogawa J, et al. 1995. Purification and characterization of an ATPdependent amidohydrolase, N-methylhydantoin amidohydrolase, from Pseudomonas putida 77. Eur. J. Biochem. 229:284 -290.
40. Rabus R, et al. 2005. The genome sequence of an anaerobic aromaticdegrading denitrifying bacterium, strain EbN1. Arch. Microbiol. 183:27-36.
41. Rabus R, Widdel F. 1995. Anaerobic degradation of ethylbenzene and other aromatic hydrocarbons by new denitrifying bacteria. Arch. Microbiol. 163:96 -103.
42. Reinhold-Hurek B, Tan Z, Hurek T. 2005. Genus II. Azoarcus Reinhold-Hurek, Hurek, Gillis, Hoste, Vancanneyt, Kersters and DeLey 1993b, 582VP, p 890-901. In Brenner DJ, Krieg NR, Staley JT, Garrity GM (ed), Bergey's manual of systematic bacteriology, 2nd ed, vol 2, part C. Springer, New York, NY.
43. Ridlon JM, Hylemon PB. 2012. Identification and characterization of two bile acid coenzyme A transferases from Clostridium scindens, a bile acid 7α-dehydroxylating intestinal bacterium. J. Lipid Res. 53:66 -76.
44. Schühle K, Heider J. 2012. Acetone and butanone metabolism of the denitrifying bacterium "Aromatoleum aromaticum" demonstrates novel biochemical properties of an ATP-dependent aliphatic ketone carboxylase. J. Bacteriol. 194:131-141.
45. Sluis MK, Ensign SA. 1997. Purification and characterization of acetone carboxylase from Xanthobacter strain Py2. Proc. Natl. Acad. Sci. U. S. A. 94:8456-8461.
46. Stahl E. 1967. Dünnschicht-Chromatographie, Ein Laboratoriumshandbuch. Springer-Verlag, Berlin, Germany.
47. Wang Y-T, Suidan MT, Pfeffer JT. 1984. Anaerobic biodegradation of indole to methane. Appl. Environ. Microbiol. 48:1058 -1060.
48. Wilkes H, et al. 2002. Anaerobic degradation of n-hexane in a denitrifying bacterium: further degradation of the initial intermediate (1-methylpentyl)succinate via C-skeleton rearrangement. Arch. Microbiol. 177:235-243.
49. Ziegler K, Braun K, Böckler A, Fuchs G. 1987. Studies on the anaerobic degradation of benzoic acid and 2-aminobenzoic acid by a denitrifying Pseudomonas strain. Arch. Microbiol. 149:62- 69.