Genetic evolution of the H9N2 avian influenza virus in Korean poultry farms

Virus Genes

Volumn 45, Issue 1, 2012, Pages 38-47

  Lee, Chang Hee ^a   Byun, Sung Hwan ^a   Lee, Youn Jeong ^b   Mo, In Pil ^a  

^a Chungbuk National University   (South Korea)

^b Animal Plant and Fisheries Quarantine and Inspection Agency   (South Korea)

Author keywords

Avian influenza virus; H9N2; NA stalk deletion; Phylogenetic analysis; Reassortment

Indexed keywords

VIRUS SIALIDASE;

AMINO ACID SEQUENCE; ANIMAL TISSUE; ARTICLE; AVIAN INFLUENZA VIRUS; BIRD; EPIDEMIC; FECES ANALYSIS; GENE DELETION; GENETIC ANALYSIS; GENETIC LINE; GENETIC REASSORTMENT; GENETIC VARIABILITY; GENOTYPE; HEN; INFLUENZA VIRUS A H9N2; MARKET; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POULTRY FARMING; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SOUTH KOREA; VIRUS GENOME; VIRUS ISOLATION;

AMINO ACID SEQUENCE; ANIMALS; CHICKENS; EVOLUTION, MOLECULAR; GENETIC VARIATION; GENOTYPE; INFLUENZA A VIRUS, H9N2 SUBTYPE; INFLUENZA IN BIRDS; MOLECULAR SEQUENCE DATA; NEURAMINIDASE; PHYLOGENY; POULTRY; POULTRY DISEASES; REASSORTANT VIRUSES; REPUBLIC OF KOREA; SEQUENCE ANALYSIS, DNA;

AVES; AVIAN INFLUENZA VIRUS;

EID: 84863986978     PISSN: 09208569     EISSN: 1572994X     Source Type: Journal    
DOI: 10.1007/s11262-012-0737-6     Document Type: Article

References (36)

1. R.A. Lamb, R.M. Krug, Orthomyxoviridae: The viruses and their replication, in Fields virology, ed. by D.M. Knipe, P.M. Howle (Lippincott Williams & Wilkins, Philadelphia, 2001), pp 1487-1532
2. R.J. Webby, R.G. Webster, Emergence of influenza A viruses. Philos Trans R Soc Lond B Biol Sci 356, 1817-1828 (2001 (Pubitemid 34099086)
3. D.A. Steinhauer, Role of hemagglutinin cleavage for the pathogenicity of influenza virus. Virology 256, 1-20 (1999 (Pubitemid 29391776)
4. A. Vines, K. Wells, M. Matrosovich, M.R. Castrucci, T. Ito, Y. Kawaoka, The role of influenza A virus hemagglutinin residues 226 and 228 in receptor specificity and host range restriction. J Virol 72, 7626-7631 (1998 (Pubitemid 28377900)
5. R.W. Compans, N.J. Dimmock, H. Meier-Ewert, Effect of antibody to neuraminidase on the maturation and hemagglutinating activity of an influenza A2 virus. J Virol 4, 528-534 (1969
6. M.R. Castrucci, Y. Kawaoka, Biologic importance of neuraminidase stalk length in influenza virus. J Virol 67, 759-764 (1993 (Pubitemid 23032053)
7. M. Matrosovich, N. Zhou, Y. Kawaoka, R. Webster, The surface glycoproteins of H5 influenza viruses isolated from humans, chickens, and wild aquatic birds have distinguishable properties. J Virol 73, 1146-1155 (1999 (Pubitemid 29036766)
8. H. Zhou, Z. Yu, Y. Hu, J. Tu, W. Zou, Y. Peng, J. Zhu, Y. Li, A. Zhang et al., The special neuraminidase stalk-motif responsible for increased virulence and pathogenesis of H5N1 influenza A virus. PLoS ONE 4(7), e6277 (2009
9. C. Li, K. Yu, G. Tian, D. Yu, L. Liu, B. Jing, J. Ping, H. Chen, Evolution of H9N2 influenza viruses from domestic poultry in Mainland China. Virology 340, 70-83 (2005 (Pubitemid 41191179)
10. H.J. Moon, M.S. Song, D.J. Cruz et al., Active reassortment of H9 influenza viruses between wild birds and live-poultry markets in Korea. Arch Virol 155, 229-241 (2010
11. D.J. Alexander, A review of avian influenza in different bird species. Vet Microbiol 74, 3-13 (2000 (Pubitemid 30224640)
12. K. Naeem, A. Ullah, R.J. Manvell, D.J. Alexander, Avian influenza A subtype H9N2 in poultry in Pakistan. Vet Rec 145, 560 (1999 (Pubitemid 29516283)
13. C.W. Lee, C.S. Song, Y.J. Lee, I.P. Mo, M. Garcia, D.L. Suarez, S.J. Kim, Sequence analysis of the hemagglutinin gene of H9N2 Korean avian influenza viruses and assessment of the pathogenic potential of isolate MS96. Avian Dis 44, 527-535 (2000
14. Halvorson DA, Frame DD, Friendshuh AJ, Shaw DP (1997)Outbreaks of low pathogenicity avian influenza in USA. In: Proceedings of the 4th international symposium on avian influenza, 29-31 May 1997. US Animal Health Association, Athens, pp 36-46
15. Y.J. Guo, S. Krauss, D.A. Senne, I.P. Mo, K.S. Lo, X.P. Xiong, M. Norwood, K.F. Shortridge, R.G. Webster, Characterization of the pathogenicity of members of the newly established H9N2 influenza virus lineages in Asia. Virology 267, 279-288 (2000 (Pubitemid 30123610)
16. Mo IP, Song CS, Kim KS, Rhee JC (1997) An occurence of nonhighly pathogenic avian influenza in Korea. In: Swayne D, Slemons R (eds) Proceedings of the 4th international symposium on avian influenza. United States Animal Health Association, Rose Printing Company, Tallahassee, pp 379-383
17. Y.K. Choi, S.H. Seo, J.A. Kim, R.J. Webby, R.G. Webster, AI viruses in Korean live poultry markets and their pathogenic potential. Virology 332, 529-537 (2005 (Pubitemid 40179191)
18. Y.J. Lee, J.Y. Shin, M.S. Song, Y.M. Lee, J.G. Choi et al., Continuing evolution of H9 influenza viruses in Korean poultry. Virology 359, 313-323 (2007
19. Senne DA, Pearson JE, Panigrahy B (1993) Live bird markets: A missing link in the epidemiology of avian influenza. In: Proceeding of the third international symposium on avian influenza. University Wisconsin, Medison, pp 7-19
20. M. Liu, S. He, D. Walker, N. Zhou, D.R. Perez, B. Mo, F. Li, X. Huang, R.G. Webster, R.J. Webby, The influenza virus gene pool in a poultry market in South central China. Virology 305, 267-275 (2003 (Pubitemid 36259661)
21. M.S. Song, T.K. Oh, H.J. Moon, D.W. Yoo, E.H. Lee, Y.K. Choi et al., Ecology of H3 avian influenza viruses in Korea and assessment of their pathogenic potentials. J Gen Virol 89, 949-957 (2008
22. M. Munch, L.P. Nielsen, K.J. Handberg, P.H. Jorgensen, Detection and subtyping (H5 and H7) of avian type A influenza virus by reverse transcription-PCR and PCR-ELISA. Arch Virol 146, 87-97 (2001 (Pubitemid 32200757)
23. E. Hoffmann, J. Stech, Y. Guan, R.G. Webster, D.R. Perez, Universal primer set for the full-length amplification of all influenza A viruses. Arch Virol 146, 2275-2289 (2001 (Pubitemid 34682391)
24. O.T.W. Li, I. Barr, C.Y.H. Leung, H. Chena, Y.J.S. Guana, M. Peiris, L.L.M. Poona, Reliable universal RT-PCR assays for studying influenza polymerase subunit gene sequences from all 16 haemagglutinin subtypes. J Virol Methods 142, 218-222 (2007 (Pubitemid 46590413)
25. J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, D.G. Higgins, The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl Acids Res 25(24), 4876-4882 (1997 (Pubitemid 28022245)
26. K. Tamura, D. Peterson, N. Peterson, G. Stecher, M. Nei, S. Kumar, MEGA 5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28(10), 2731-2739 (2011
27. L. Campitelli, A.D. Martino, D. Spagnolo, G.J.D. Smith, I. Donatelli et al., Molecular analysis of avian H7 influenza viruses circulating in Eurasia in 1999-2005: Detection of multiple reassortant virus genotypes. J Gen Virol 89, 48-59 (2008
28. M.N. Matrosovich, S. Krauss, R.G. Webster, H9N2 influenza A viruses from poultry in Asia have human virus-like receptor specificity. Virology 281, 156-162 (2001 (Pubitemid 32881133)
29. H.J. Kwon, S.H. Cho, M.C. Kim, Y.J. Ahn, S.J. Kim, Molecular epidemiology of recurrent low pathogenic avian influenza by H9N2 subtype virus in Korea. Avian Pathol 35, 309-315 (2006
30. K.J. Park, H.I. Kwon, M.S. Song, P.N.Q. Pascua, Y.H. Baek, J.H. Lee, Y.K. Choi et al., Rapid evolution of low pathogenic H9N2 avian influenza viruses following poultry vaccination programs. J Gen Virol (2010). doi:10.1099/vir.0. 024992-0
31. E. Sorrell, H. Wan, Y. Araya, H. Song, D.R. Perez, Minimal molecular constraints for respiratory droplet transmission of an avian-human H9N2 influenza A virus. Proceedings of the National Academy of Sciences 5, 7565-7570 (2009
32. A. Fusaro, I. Monne, A. Salviato et al., Phylogeography and evolutionary history of reassortant H9N2 viruses with potential human health implications. J Virol 85, 8413-8421 (2011
33. J. Banks, E.S. Speidel, E. Moore, L. Plowright, A. Piccirillo, I. Capua, P. Cordioli, A. Fioretti, D.J. Alexander, Changes in the haemagglutinin and the neuraminidase genes prior to the emergence of highly pathogenic H7N1 avian influenza viruses in Italy. Arch Virol 146, 963-973 (2001 (Pubitemid 32477408)
34. J. Li, H. Dohna, C.J. Cardona, J. Miller, T.E. Carpenter, Emergence and genetic variation of neuraminidase stalk deletions in avian influenza viruses. PLoS ONE 6, e14722 (2011
35. J.G. Choi, Y.J. Lee, Y.J. Kim, E.K. Lee, O.M. Jeong, H.W. Sung, J.H. Kim, J.H. Kwon, An inactivated vaccine to control the current H9N2 low pathogenic avian influenza in Korea. J Vet Sci 9, 67-74 (2008
36. K.L. Deshpande, C.W. Naeve, R.G. Webster, The neuraminidases of the virulent and avirulent A/Chicken/Pennsylvania/83 (H5N2) influenza A viruses: Sequence and antigenic analyses. Virology 147, 49-60 (1985) (Pubitemid 16200569)