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Volumn 86, Issue 1, 2012, Pages

Lattice animal model of chromosome organization

Author keywords

[No Author keywords available]

Indexed keywords

FLUORESCENT IN SITU HYBRIDIZATION; LATTICE ANIMALS; LEVELING OFFS; MONTE CARLO SIMULATION; NATURAL CONSEQUENCES; ORGANIZATIONAL CHARACTERISTICS; POLYMER MODELS; SHOW THROUGH; SPATIAL DISTANCE;

EID: 84863939221     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.86.011911     Document Type: Article
Times cited : (19)

References (33)
  • 1
    • 85015069067 scopus 로고    scopus 로고
    • Controlling the double helix
    • DOI 10.1038/nature01411
    • G. Felsenfeld and M. Groudine, Nature NATUAS 0028-0836 10.1038/nature01411 421, 448 (2003). (Pubitemid 36157954)
    • (2003) Nature , vol.421 , Issue.6921 , pp. 448-453
    • Felsenfeld, G.1    Groudine, M.2
  • 2
    • 41349089522 scopus 로고    scopus 로고
    • Gene regulation in the third dimension
    • DOI 10.1126/science.1152850
    • J. Dekker, Science SCIEAS 0036-8075 10.1126/science.1152850 319, 1793 (2008). (Pubitemid 351451557)
    • (2008) Science , vol.319 , Issue.5871 , pp. 1793-1794
    • Dekker, J.1
  • 4
    • 0035316574 scopus 로고    scopus 로고
    • Chromosome territories, nuclear architecture and gene regulation in mammalian cells
    • DOI 10.1038/35066075
    • T. Cremer and C. Cremer, Nat. Rev. Genet. 1471-0056 10.1038/35066075 2, 292 (2001). (Pubitemid 33674777)
    • (2001) Nature Reviews Genetics , vol.2 , Issue.4 , pp. 292-301
    • Cremer, T.1    Cremer, C.2
  • 5
    • 0036709614 scopus 로고    scopus 로고
    • Chromosome positioning in the interphase nucleus
    • DOI 10.1016/S0962-8924(02)02351-6, PII S0962892402023516
    • L. A. Parada and T. Misteli, Trends Cell Biol. TCBIEK 0962-8924 10.1016/S0962-8924(02)02351-6 12, 425 (2002). (Pubitemid 35239951)
    • (2002) Trends in Cell Biology , vol.12 , Issue.9 , pp. 425-432
    • Parada, L.A.1    Misteli, T.2
  • 9
    • 0026737923 scopus 로고
    • SCIEAS 0036-8075 10.1126/science.1388286
    • G. van den Engh, R. K. Sachs, and B. J. Trask, Science SCIEAS 0036-8075 10.1126/science.1388286 257, 1410 (1992).
    • (1992) Science , vol.257 , pp. 1410
    • Van Den Engh, G.1    Sachs, R.K.2    Trask, B.J.3
  • 11
    • 0028139575 scopus 로고
    • JBSDD6 0739-1102 10.1080/07391102.1994.10508034
    • J. Ostashevsky and C. Lange, J. Biomol. Struct. Dyn. JBSDD6 0739-1102 10.1080/07391102.1994.10508034 11, 813 (1994).
    • (1994) J. Biomol. Struct. Dyn. , vol.11 , pp. 813
    • Ostashevsky, J.1    Lange, C.2
  • 12
    • 0032072415 scopus 로고    scopus 로고
    • PLEEE8 1539-3755 10.1103/PhysRevE.57.5888
    • C. Münkel and J. Langowski, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.57.5888 57, 5888 (1998).
    • (1998) Phys. Rev. e , vol.57 , pp. 5888
    • Münkel, C.1    Langowski, J.2
  • 14
    • 0037083376 scopus 로고    scopus 로고
    • Capturing chromosome conformation
    • DOI 10.1126/science.1067799
    • J. Dekker, K. Rippe, M. Dekker, and N. Kleckner, Science SCIEAS 0036-8075 10.1126/science.1067799 295, 1306 (2002). (Pubitemid 34157624)
    • (2002) Science , vol.295 , Issue.5558 , pp. 1306-1311
    • Dekker, J.1    Rippe, K.2    Dekker, M.3    Kleckner, N.4
  • 18
    • 77957867310 scopus 로고    scopus 로고
    • 1932-6203 10.1371/journal.pone.0012218
    • M. Bohn, and D. W. Heermann, PLoS ONE 1932-6203 10.1371/journal.pone. 0012218 5, e12218 (2010).
    • (2010) PLoS ONE , vol.5 , pp. 12218
    • Bohn, M.1    Heermann, D.W.2
  • 19
    • 77953012431 scopus 로고    scopus 로고
    • BIOJAU 0006-3495 10.1016/j.bpj.2010.01.054
    • A. Rosa, N. B. Becker, and R. Everaers, Biophys. J. BIOJAU 0006-3495 10.1016/j.bpj.2010.01.054 98, 2410 (2010).
    • (2010) Biophys. J. , vol.98 , pp. 2410
    • Rosa, A.1    Becker, N.B.2    Everaers, R.3
  • 20
    • 50949125193 scopus 로고    scopus 로고
    • 1553-734X 10.1371/journal.pcbi.1000153
    • A. Rosa and R. Everaers, PLOS Comput. Biol. 1553-734X 10.1371/journal.pcbi.1000153 4, e1000153 (2008).
    • (2008) PLOS Comput. Biol. , vol.4 , pp. 1000153
    • Rosa, A.1    Everaers, R.2
  • 21
    • 75749147065 scopus 로고    scopus 로고
    • JCPSA6 0021-9606 10.1063/1.3302812
    • M. Bohn and D. W. Heermann, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.3302812 132, 044904 (2010).
    • (2010) J. Chem. Phys. , vol.132 , pp. 044904
    • Bohn, M.1    Heermann, D.W.2
  • 25
    • 70349944662 scopus 로고    scopus 로고
    • JCLBA3 0021-9525 10.1083/jcb.200903083
    • P. R. Cook and D. Marenduzzo, J. Cell. Biol. JCLBA3 0021-9525 10.1083/jcb.200903083 186, 825 (2009).
    • (2009) J. Cell. Biol. , vol.186 , pp. 825
    • Cook, P.R.1    Marenduzzo, D.2
  • 26
    • 0001305280 scopus 로고
    • PYLAAG 0375-9601 10.1016/0375-9601(85)90678-4
    • A. R. Khokhlov and S. K. Nechaev, Phys. Lett. A PYLAAG 0375-9601 10.1016/0375-9601(85)90678-4 112, 156 (1985).
    • (1985) Phys. Lett. A , vol.112 , pp. 156
    • Khokhlov, A.R.1    Nechaev, S.K.2
  • 27
    • 84863966577 scopus 로고    scopus 로고
    • Typically, each node is considered in turn as the origin for the computation of the largest generation number of a LA. However, since the distribution of nodes with reference to any node should be equivalent for an exhaustively sampled structure, we find it sufficient to fix one node permanently as the origin node. Our choice of keeping the origin node fixed facilitates rapid computation of the maximum generation numbers while still yielding the correct ensemble of structures.
    • Typically, each node is considered in turn as the origin for the computation of the largest generation number of a LA. However, since the distribution of nodes with reference to any node should be equivalent for an exhaustively sampled structure, we find it sufficient to fix one node permanently as the origin node. Our choice of keeping the origin node fixed facilitates rapid computation of the maximum generation numbers while still yielding the correct ensemble of structures.
  • 28
    • 29444450946 scopus 로고
    • PLRAAN 1050-2947 10.1103/PhysRevA.20.2130
    • T. C. Lubensky and J. Isaacson, Phys. Rev. A PLRAAN 1050-2947 10.1103/PhysRevA.20.2130 20, 2130 (1979).
    • (1979) Phys. Rev. A , vol.20 , pp. 2130
    • Lubensky, T.C.1    Isaacson, J.2
  • 29
    • 0001505046 scopus 로고
    • PRLTAO 0031-9007 10.1103/PhysRevLett.46.871
    • G. Parisi and N. Sourlas, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.46.871 46, 871 (1981).
    • (1981) Phys. Rev. Lett. , vol.46 , pp. 871
    • Parisi, G.1    Sourlas, N.2
  • 31
    • 33847077659 scopus 로고    scopus 로고
    • Beyond the Sequence: Cellular Organization of Genome Function
    • DOI 10.1016/j.cell.2007.01.028, PII S0092867407001262
    • T. Misteli, Cell CELLB5 0092-8674 10.1016/j.cell.2007.01.028 128, 787 (2007). (Pubitemid 46273571)
    • (2007) Cell , vol.128 , Issue.4 , pp. 787-800
    • Misteli, T.1
  • 32
    • 0033546210 scopus 로고    scopus 로고
    • The organization of replication and transcription
    • DOI 10.1126/science.284.5421.1790
    • P. R. Cook, Science SCIEAS 0036-8075 10.1126/science.284.5421.1790 284, 1790 (1999). (Pubitemid 29291422)
    • (1999) Science , vol.284 , Issue.5421 , pp. 1790-1795
    • Cook, P.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.