메뉴 건너뛰기




Volumn 11, Issue 4, 2012, Pages 395-408

Comparative proteome analysis of human lung squamous carcinoma using two different methods: Two-dimensional gel electrophoresis and iTRAQ analysis

Author keywords

2 DE; Biomarker; HLSC; ITRAQ; LCM

Indexed keywords

CHAPERONE; GLUTATHIONE TRANSFERASE P1; GUANOSINE TRIPHOSPHATE; HEAT SHOCK PROTEIN 27;

EID: 84863911520     PISSN: 15330346     EISSN: None     Source Type: Journal    
DOI: 10.7785/tcrt.2012.500287     Document Type: Article
Times cited : (12)

References (37)
  • 2
    • 0023726197 scopus 로고
    • Prognosis and survival in resected lung carcinoma based on the new international staging system
    • Naruke, T., Goya, T., Tsuchiya, R., Suemasu, K. Prognosis and survival in resected lung carcinoma based on the new international staging system. J Thorac Cardiovasc Surg 96, 440-447 (1988).
    • (1988) J Thorac Cardiovasc Surg , vol.96 , pp. 440-447
    • Naruke, T.1    Goya, T.2    Tsuchiya, R.3    Suemasu, K.4
  • 5
    • 0036120616 scopus 로고    scopus 로고
    • Laser capture microdissection and two-dimensional polyacrylamide gel electrophoresis: Evaluation of tissue preparation and sample limitations
    • Craven, R. A., Totty, N., Harnden, P., Selby, P. J., Banks, R. E. Laser capture microdissection and two-dimensional polyacrylamide gel electrophoresis: evaluation of tissue preparation and sample limitations. Am J Pathol 160, 815-822 (2002).
    • (2002) Am J Pathol , vol.160 , pp. 815-822
    • Craven, R.A.1    Totty, N.2    Harnden, P.3    Selby, P.J.4    Banks, R.E.5
  • 7
    • 33644845960 scopus 로고    scopus 로고
    • Comparative study of three proteomic quantitative methods, DIGE, cICAT, and iTRAQ, using 2D gel- or LC-MALDI TOF/TOF
    • Wu, W. W., Wang, G., Baek, S. J., Shen, R. F. Comparative study of three proteomic quantitative methods, DIGE, cICAT, and iTRAQ, using 2D gel- or LC-MALDI TOF/TOF. J Proteome Res 5, 651-658 (2006).
    • (2006) J Proteome Res , vol.5 , pp. 651-658
    • Wu, W.W.1    Wang, G.2    Baek, S.J.3    Shen, R.F.4
  • 10
    • 61349156154 scopus 로고    scopus 로고
    • Identification of RKIP as an invasion suppressor protein in nasopharyngeal carcinoma by pro-teomic analysis
    • Chen, Y., Ouyang, G. L., Yi, H., Li, M. Y., Zhang, P. F., Li, C., Li, J. L., Liu, Y. F., Chen, Z. C., Xiao, Z. Q. Identification of RKIP as an invasion suppressor protein in nasopharyngeal carcinoma by pro-teomic analysis. J Proteome Res 7, 5254-5262 (2008).
    • (2008) J Proteome Res , vol.7 , pp. 5254-5262
    • Chen, Y.1    Ouyang, G.L.2    Yi, H.3    Li, M.Y.4    Zhang, P.F.5    Li, C.6    Li, J.L.7    Liu, Y.F.8    Chen, Z.C.9    Xiao, Z.Q.10
  • 11
    • 33645469689 scopus 로고    scopus 로고
    • Proteome analysis of multidrug resistance in vincristine-resistant human gastric cancer cell line SGC7901/VCR
    • Yang, Y. X., Xiao, Z. Q., Chen, Z. C., Zhang, G. Y., Yi, H., Zhang, P. F., Li, J. L., Zhu, G. Proteome analysis of multidrug resistance in vincristine-resistant human gastric cancer cell line SGC7901/VCR. Proteomics 6, 2009-2021 (2006).
    • (2006) Proteomics , vol.6 , pp. 2009-2021
    • Yang, Y.X.1    Xiao, Z.Q.2    Chen, Z.C.3    Zhang, G.Y.4    Yi, H.5    Zhang, P.F.6    Li, J.L.7    Zhu, G.8
  • 12
    • 77952764025 scopus 로고    scopus 로고
    • Quantitative proteomic analysis of formalin-fixed and paraffin-embedded nasopharyngeal carcinoma using iTRAQ labeling, two-dimensional liquid chromatography, and tandem mass spectrometry
    • Xiao, Z., Li, G., Chen, Y., Li, M., Peng, F., Li, C., Li, F., Yu, Y., Ouy-ang, Y., Xiao, Z., Chen, Z. Quantitative proteomic analysis of formalin-fixed and paraffin-embedded nasopharyngeal carcinoma using iTRAQ labeling, two-dimensional liquid chromatography, and tandem mass spectrometry. J Histochem Cytochem 58, 517-527 (2010).
    • (2010) J Histochem Cytochem , vol.58 , pp. 517-527
    • Xiao, Z.1    Li, G.2    Chen, Y.3    Li, M.4    Peng, F.5    Li, C.6    Li, F.7    Yu, Y.8    Ouy-Ang, Y.9    Xiao, Z.10    Chen, Z.11
  • 13
    • 34547131803 scopus 로고    scopus 로고
    • Endometrial carcinoma biomarker discovery and verification using differentially tagged clinical samples with multidimensional liquid chromatography and tandem mass spectrometry
    • DeSouza, L. V., Grigull, J., Ghanny, S., Dubé, V., Romaschin, A. D., Colgan, T. J., Siu, K. W. Endometrial carcinoma biomarker discovery and verification using differentially tagged clinical samples with multidimensional liquid chromatography and tandem mass spectrometry. Mol Cell Proteomics 6, 1170-1182 (2007).
    • (2007) Mol Cell Proteomics , vol.6 , pp. 1170-1182
    • Desouza, L.V.1    Grigull, J.2    Ghanny, S.3    Dubé, V.4    Romaschin, A.D.5    Colgan, T.J.6    Siu, K.W.7
  • 14
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang, D. W., Sherman, B. T., Lempicki, R. A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4, 44-57 (2009).
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 16
    • 46749120270 scopus 로고    scopus 로고
    • Discovery and verifcation of head-and-neck cancer biomarkers by differential protein expression analysis using iTRAQ labeling, multidimensional liquid chromatography, and tandem mass spectrometry
    • Ralhan, R., Desouza, L. V., Matta, A., Chandra Tripathi, S., Ghanny, S., Datta Gupta, S., Bahadur, S., Siu, K. W. Discovery and verifcation of head-and-neck cancer biomarkers by differential protein expression analysis using iTRAQ labeling, multidimensional liquid chromatography, and tandem mass spectrometry. Mol Cell Proteomics 7, 1162-1173 (2008).
    • (2008) Mol Cell Proteomics , vol.7 , pp. 1162-1173
    • Ralhan, R.1    Desouza, L.V.2    Matta, A.3    Chandra Tripathi, S.4    Ghanny, S.5    Datta Gupta, S.6    Bahadur, S.7    Siu, K.W.8
  • 17
    • 21744445069 scopus 로고    scopus 로고
    • Heat shock proteins in cancer: Diagnostic, prognostic, predictive, and treatment implications
    • Ciocca, D. R., Calderwood, S. K. Heat shock proteins in cancer: diagnostic, prognostic, predictive, and treatment implications. Cell Stress Chaperones 10, 86-103 (2005).
    • (2005) Cell Stress Chaperones , vol.10 , pp. 86-103
    • Ciocca, D.R.1    Calderwood, S.K.2
  • 18
    • 37549025455 scopus 로고    scopus 로고
    • Hsp27 modulates p53 signaling and suppresses cellular senescence
    • O'Callaghan-Sunol, C., Gabai, V. L., Sherman, M. Y. Hsp27 modulates p53 signaling and suppresses cellular senescence. Cancer Res 67, 11779-11788 (2007)
    • (2007) Cancer Res , vol.67 , pp. 11779-11788
    • O'callaghan-Sunol, C.1    Gabai, V.L.2    Sherman, M.Y.3
  • 20
    • 67649262170 scopus 로고    scopus 로고
    • Dysregulation of heat shock protein 27 expression in oral tongue squamous cell carcinoma
    • Wang, A., Liu, X., Sheng, S., Ye, H., Peng, T., Shi, F., Crowe, D. L., Zhou, X. Dysregulation of heat shock protein 27 expression in oral tongue squamous cell carcinoma. BMC Cancer 9, 167 (2009).
    • (2009) BMC Cancer , vol.9 , pp. 167
    • Wang, A.1    Liu, X.2    Sheng, S.3    Ye, H.4    Peng, T.5    Shi, F.6    Crowe, D.L.7    Zhou, X.8
  • 22
    • 0031056809 scopus 로고    scopus 로고
    • Heat-shock protein 27 (HSP27) and its role in female reproductive organs
    • Devaja, O., King, R. J., Papadopoulos, A., Raju, K. S. Heat-shock protein 27 (HSP27) and its role in female reproductive organs. Eur J Gynaecol Oncol 18, 16-22(1997)
    • (1997) Eur J Gynaecol Oncol , vol.18 , pp. 16-22
    • Devaja, O.1    King, R.J.2    Papadopoulos, A.3    Raju, K.S.4
  • 23
    • 39149118926 scopus 로고    scopus 로고
    • Proteomic identifcation of heat shock protein 27 as a differentiation and prognostic marker in neuroblastoma but not in Ewing's sarcoma
    • Zanini, C., Pulerà, F., Carta, F., Giribaldi, G., Mandili, G., Maule, M. M., Forni, M., Turrini, F. Proteomic identifcation of heat shock protein 27 as a differentiation and prognostic marker in neuroblastoma but not in Ewing's sarcoma. Virchows Arch 452, 157-167 (2008).
    • (2008) Virchows Arch , vol.452 , pp. 157-167
    • Zanini, C.1    Pulerà, F.2    Carta, F.3    Giribaldi, G.4    Mandili, G.5    Maule, M.M.6    Forni, M.7    Turrini, F.8
  • 24
    • 0034609765 scopus 로고    scopus 로고
    • Differential regulation of HSP27 oligomerization in tumor cells grown in vitro and in vivo
    • Bruey, J. M., Paul, C., Fromentin, A., Hilpert, S., Arrigo, A. P., Solary, E., Garrido C. Differential regulation of HSP27 oligomerization in tumor cells grown in vitro and in vivo. Oncogene 19, 4855-4863 (2000).
    • (2000) Oncogene , vol.19 , pp. 4855-4863
    • Bruey, J.M.1    Paul, C.2    Fromentin, A.3    Hilpert, S.4    Arrigo, A.P.5    Solary, E.6    Garrido, C.7
  • 25
    • 34447135482 scopus 로고    scopus 로고
    • Inhibition of heat shock protein 27-mediated resistance to DNA damaging agents by a novel PKC delta-V5 heptapeptide
    • Kim, E. H., Lee, H. J., Lee, D. H., Bae, S., Soh, J. W., Jeoung, D., Kim, J., Cho, C. K., Lee, Y. J., Lee, Y. S. Inhibition of heat shock protein 27-mediated resistance to DNA damaging agents by a novel PKC delta-V5 heptapeptide. Cancer Res 67, 6333-6341 (2007).
    • (2007) Cancer Res , vol.67 , pp. 6333-6341
    • Kim, E.H.1    Lee, H.J.2    Lee, D.H.3    Bae, S.4    Soh, J.W.5    Jeoung, D.6    Kim, J.7    Cho, C.K.8    Lee, Y.J.9    Lee, Y.S.10
  • 27
    • 33846821658 scopus 로고    scopus 로고
    • Hsp27 nockdown using nucleotide-based therapies inhibit tumor growth and enhance chemotherapy in human bladder cancer cells
    • Kamada, M., So, A., Muramaki, M., Rocchi, P., Beraldi, E., Gleave, M. Hsp27 nockdown using nucleotide-based therapies inhibit tumor growth and enhance chemotherapy in human bladder cancer cells. Mol Cancer Ther 6, 299-308 (2007).
    • (2007) Mol Cancer Ther , vol.6 , pp. 299-308
    • Kamada, M.1    So, A.2    Muramaki, M.3    Rocchi, P.4    Beraldi, E.5    Gleave, M.6
  • 29
    • 0027305406 scopus 로고
    • Glutathione-associated cis-diamminedi-chloroplatinum(II) metabolism and ATP-dependent effux from leukemia cells. Molecular characterization of glutathione-platinum complex and its biological signifcance
    • Ishikawa, T., Ali-Osman, F. Glutathione-associated cis-diamminedi-chloroplatinum(II) metabolism and ATP-dependent effux from leukemia cells. Molecular characterization of glutathione-platinum complex and its biological signifcance. J Biol Chem 268, 20116-20125 (1993).
    • (1993) J Biol Chem , vol.268 , pp. 20116-20125
    • Ishikawa, T.1    Ali-Osman, F.2
  • 30
    • 33748919803 scopus 로고    scopus 로고
    • Human glutathione S-transferase P1-1 interacts with TRAF2 and regulates TRAF2-ASK1 signals
    • Wu, Y., Fan, Y., Xue, B., Luo, L., Shen, J., Zhang, S., Jiang, Y., Yin, Z. Human glutathione S-transferase P1-1 interacts with TRAF2 and regulates TRAF2-ASK1 signals. Oncogene 25, 5787-5800 (2006).
    • (2006) Oncogene , vol.25 , pp. 5787-5800
    • Wu, Y.1    Fan, Y.2    Xue, B.3    Luo, L.4    Shen, J.5    Zhang, S.6    Jiang, Y.7    Yin, Z.8
  • 32
    • 36148958662 scopus 로고    scopus 로고
    • Differential effects of glutathione S-transferase pi (GSTP1) haplotypes on cell proliferation and apoptosis
    • Holley, S. L., Fryer, A. A., Haycock, J. W., Grubb, S. E., Strange, R. C., Hoban, P. R. Differential effects of glutathione S-transferase pi (GSTP1) haplotypes on cell proliferation and apoptosis. Carcinogen-esis 28, 2268-2273 (2007).
    • (2007) Carcinogen-esis , vol.28 , pp. 2268-2273
    • Holley, S.L.1    Fryer, A.A.2    Haycock, J.W.3    Grubb, S.E.4    Strange, R.C.5    Hoban, P.R.6
  • 33
    • 0032532092 scopus 로고    scopus 로고
    • Inactivation of glutathione S-transferase P1 gene by promoter hypermethylation in human neoplasia
    • Esteller, M., Corn, P. G., Urena, J. M., Gabrielson, E., Baylin, S. B., Herman, J. G. Inactivation of glutathione S-transferase P1 gene by promoter hypermethylation in human neoplasia. Cancer Res 58, 4515-4518 (1998).
    • (1998) Cancer Res , vol.58 , pp. 4515-4518
    • Esteller, M.1    Corn, P.G.2    Urena, J.M.3    Gabrielson, E.4    Baylin, S.B.5    Herman, J.G.6
  • 34
    • 0032894125 scopus 로고    scopus 로고
    • Detection of aberrant promoter hyperm-ethylation of tumor suppressor genes in serum DNA from non-small cell lung cancer patients
    • Esteller, M., Sanchez-Cespedes, M., Rosell, R., Sidransky, D., Baylin, S. B., Herman, J. G. Detection of aberrant promoter hyperm-ethylation of tumor suppressor genes in serum DNA from non-small cell lung cancer patients. Cancer Res 59, 67-70 (1999).
    • (1999) Cancer Res , vol.59 , pp. 67-70
    • Esteller, M.1    Sanchez-Cespedes, M.2    Rosell, R.3    Sidransky, D.4    Baylin, S.B.5    Herman, J.G.6
  • 35
    • 26944472085 scopus 로고    scopus 로고
    • Update on proteomics in Arabidopsis. Where do we go from here?
    • Peck, S. C. Update on proteomics in Arabidopsis. Where do we go from here? Plant Physiol 138, 591-599 (2005).
    • (2005) Plant Physiol , vol.138 , pp. 591-599
    • Peck, S.C.1
  • 36
    • 21644483165 scopus 로고    scopus 로고
    • A comparison of the consistency of proteome quantitation using two-dimensional electrophoresis and shotgun isobaric tagging in Escherichia coli cells
    • Choe, L. H., Aggarwal, K., Franck, Z., Lee, K. H. A comparison of the consistency of proteome quantitation using two-dimensional electrophoresis and shotgun isobaric tagging in Escherichia coli cells. Electrophoresis 26, 2437-2449 (2005).
    • (2005) Electrophoresis , vol.26 , pp. 2437-2449
    • Choe, L.H.1    Aggarwal, K.2    Franck, Z.3    Lee, K.H.4
  • 37
    • 20644463201 scopus 로고    scopus 로고
    • Quantitative analysis of protein expression using amine-specifc isobaric tags in Escherichia coli cells expressing rhsA elements
    • Aggarwal, K., Choe, L. H., Lee, K. H. Quantitative analysis of protein expression using amine-specifc isobaric tags in Escherichia coli cells expressing rhsA elements. Proteomics 5, 2297-308 (2005).
    • (2005) Proteomics , vol.5 , pp. 2297-2308
    • Aggarwal, K.1    Choe, L.H.2    Lee, K.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.