Comparative analysis of P2-type remnant prophage loci in Xenorhabdus bovienii and Xenorhabdus nematophila required for xenorhabdicin production

FEMS Microbiology Letters

Volumn 333, Issue 1, 2012, Pages 69-76

  Morales Soto, Nydia ^a,b   Gaudriault, Sophie ^c   Ogier, Jean Claude ^c   Thappeta, Kishore R V ^a   Forst, Steven ^a  

^a UNIVERSITY OF WISCONSIN MILWAUKEE   (United States)

^b University of Notre Dame   (United States)

^c University of Montpellier II   (France)

Author keywords

Bacteriocins; P2 prophage; Photorhabdus; Xenorhabdicins; Xenorhabdus

Indexed keywords

BACTERIAL PROTEIN; UNCLASSIFIED DRUG; XENORHABDICIN;

ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; CARBOXY TERMINAL SEQUENCE; COMPARATIVE STUDY; CONTROLLED STUDY; CYTOKINE PRODUCTION; GENE INACTIVATION; GENE SEQUENCE; HOST RANGE; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; PROPHAGE; PROTEIN CLEAVAGE; XBP1 GENE; XBPS1 GENE; XENORHABDUS; XENORHABDUS BOVIENII; XENORHABDUS NEMATOPHILA; XNP1 GENE;

AMINO ACID SEQUENCE; ANTI-BACTERIAL AGENTS; BACTERIOCINS; BACTERIOPHAGE P2; COMPUTATIONAL BIOLOGY; CONSERVED SEQUENCE; DNA, BACTERIAL; ENDOPEPTIDASES; GENE EXPRESSION REGULATION, BACTERIAL; GENETIC LOCI; GENOME, BACTERIAL; HOST SPECIFICITY; MITOMYCIN; MOLECULAR SEQUENCE DATA; PHOTORHABDUS; PROPHAGES; REC A RECOMBINASES; RECOMBINATION, GENETIC; REPRESSOR PROTEINS; SPECIES SPECIFICITY; VIRAL PROTEINS; VIRAL TAIL PROTEINS; XENORHABDUS;

PHOTORHABDUS; XENORHABDUS; XENORHABDUS BOVIENII; XENORHABDUS NEMATOPHILA;

EID: 84863856038     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2012.02600.x     Document Type: Article

References (27)

1. Achaz G, Boyer F, Rocha E, Viari A & Coissac E (2007) Repseek, a tool to retrieve approximate repeats from large DNA sequences. Bionformatics 23: 119-121.
2. Asadulghani M, Ogura Y, Ooka T, Itoh T, Sawaguchi A, Iguchi A, Nakayama K & Hayashi T (2009) The defective prophage pool of Escherichia coli O157: prophage-prophage interactions potentiate horizontal transfer of virulence determinants. PLoS Pathog 5: e1000408.
3. Baghdiguian S, Boyer-Giglio MH, Thaler JO, Bonnot G & Boemare N (1993) Bacteriocinogenesis in cells of Xenorhabdus nematophilus and Photorhabdus luminescens: Enterobacteriaceae associated with entomopathogenic nematodes. Biol Cell 79: 177-185.
4. Boemare NE, Boyer-Giglio MH, Thaler JO, Akhurst RJ & Brehelin M (1992) Lysogeny and bacteriocinogeny in Xenorhabdus nematophilus and other Xenorhabdus spp. Appl Environ Microbiol 58: 3032-3037.
5. Brillard J, Boyer-Giglio MH, Boemare N & Givaudan A (2003) Holin locus characterization from lysogenic Xenorhabdus nematophila and its involvement in Escherichia coli SheA haemolytic phenotype. FEMS Microbiol Lett 218: 107-113.
6. Brussow H (2006) Prophage genomics. The Bacteriophages (Calendar R, ed), pp. 17-25. Oxford University Press, Inc., Oxford, NY.
7. Chaston JM, Suen G, Tucker SL et al. (2011) The entomopathogenic bacterial endosymbionts Xenorhabdus and Photorhabdus: convergent lifestyles from divergent genomes. PLoS ONE 6: e27909.
8. Forst S, Dowds B, Boemare N & Stackebrandt E (1997) Xenorhabdus and Photorhabdus spp.: bugs that kill bugs. Annu Rev Microbiol 51: 47-72.
9. Garrett J, Fusselman R, Hise J, Chiou L, Smith-Grillo D, Schulz J & Young R (1981) Cell lysis by induction of cloned lambda lysis genes. Mol Gen Genet 182: 326-331.
10. Gaudriault S, Thaler JO, Duchaud E, Kunst F, Boemare N & Givaudan A (2004) Identification of a P2-related prophage remnant locus of Photorhabdus luminescens encoding an R-type phage tail-like particle. FEMS Microbiol Lett 233: 223-231.
11. Goodrich-Blair H & Clarke DJ (2007) Mutualism and pathogenesis in Xenorhabdus and Photorhabdus: two roads to the same destination. Mol Microbiol 64: 260-268.
12. Haggard-Ljungquist E, Halling C & Calendar R (1992) DNA sequences of the tail fiber genes of bacteriophage P2: evidence for horizontal transfer of tail fiber genes among unrelated bacteriophages. J Bacteriol 174: 1462-1477.
13. Hawlena H, Bashey F & Lively CM (2010) The evolution of spite: population structure and bacteriocin-mediated antagonism in two natural populations of Xenorhabdus bacteria. Evolution 64: 3198-3204.
14. Kaya HK & Gaugler R (1993) Entomopathogenic nematodes. Annu Rev Entomol 38: 181-206.
15. Kohler T, Donner V & van Delden C (2010) Lipopolysaccharide as shield and receptor for R-pyocin-mediated killing in Pseudomonas aeruginosa. J Bacteriol 192: 1921-1928.
16. Lusetti SL, Voloshin ON, Inman RB, Camerini-Otero RD & Cox MM (2004) The DinI protein stabilizes RecA protein filaments. J Biol Chem 279: 30037-30046.
17. Morales-Soto N & Forst S (2011) The xnp1 P2-like tail synthesis gene cluster encodes xenorhabdicin and is required for interspecies competition. J Bacteriol 193: 3624-3632.
18. Morales-Soto N, Snyder H & Forst S (2009) Interspecies competition in a bacteria-nematode mutualism. Defensive Mutualism in Microbial Symbiosis, Vol. 27 (White JF & Torres MS, eds), pp. 117-127. Taylor and Francis Group, LLC, Boca Raton, FL.
19. Nguyen HA, Tomita T, Hirota M, Kaneko J, Hayashi T & Kamio Y (2001) DNA inversion in the tail fiber gene alters the host range specificity of carotovoricin Er, a phage-tail-like bacteriocin of phytopathogenic Erwinia carotovora subsp. carotovora Er. J Bacteriol 183: 6274-6281.
20. Nilsson AS & Haggard-Ljungquist E (2006) The P2-like bacteriophages. The Bacteriophages (Calendar R, ed), pp. 365-390. Oxford University Press, Inc., Oxford, NY.
21. Nilsson AS & Haggard-Ljungquist E (2007) Evolution of P2-like phages and their impact on bacterial evolution. Res Microbiol 158: 311-317.
22. Ogier JC, Calteau A, Forst S et al. (2010) Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus. BMC Genomics 11: 568.
23. Sicard M, Tabart J, Boemare NE, Thaler O & Moulia C (2005) Effect of phenotypic variation in Xenorhabdus nematophila on its mutualistic relationship with the entomopathogenic nematode Steinernema carpocapsae. Parasitology 131: 687-694.
24. Snyder H, Stock SP, Kim SK, Flores-Lara Y & Forst S (2007) New insights into the colonization and release processes of Xenorhabdus nematophila and the morphology and ultrastructure of the bacterial receptacle of its nematode host, Steinernema carpocapsae. Appl Environ Microbiol 73: 5338-5346.
25. Thaler JO, Baghdiguian S & Boemare N (1995) Purification and characterization of xenorhabdicin, a phage tail-like bacteriocin, from the lysogenic strain F1 of Xenorhabdus nematophilus. Appl Environ Microbiol 61: 2049-2052.
26. Veesler D & Cambillau C (2011) A common evolutionary origin for tailed-bacteriophage functional modules and bacterial machineries. Microbiol Mol Biol Rev 75: 423-433.
27. Young R (2002) Bacteriophage holins: deadly diversity. J Mol Microbiol Biotechnol 4: 21-36.