Genetic variation and population structure of the japanese sika deer (Cervus nippon) in the tohoku district based on mitochondrial D-loop sequences

Zoological Science

Volumn 29, Issue 7, 2012, Pages 433-436

  Takiguchi, Harutaka ^a   Tanaka, Kazuaki ^a   Ono, Kana ^a   Hoshi, Asuka ^a   Minami, Masato ^a   Yamauchi, Kiyoshi ^b   Takatsuki, Seiki ^a  

^a AZABU UNIVERSITY   (Japan)

^b Research Institute for Environmental Sciences and Public Health of Iwate Prefecture   (Japan)

Author keywords

Cervus nippon; mtDNA; phylogeny; sika deer; Tohoku

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; DEER; FEMALE; GENETIC VARIABILITY; GENETICS; HAPLOTYPE; JAPAN; PHYLOGEOGRAPHY; PHYSIOLOGY;

ANIMALS; DEER; DNA, MITOCHONDRIAL; FEMALE; GENETIC VARIATION; HAPLOTYPES; JAPAN; PHYLOGEOGRAPHY;

CERVUS NIPPON;

EID: 84863760563     PISSN: 02890003     EISSN: None     Source Type: Journal    
DOI: 10.2108/zsj.29.433     Document Type: Article

References (18)

1. Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evol Bioinform Online 1: 47-50
2. Goodman SJ, Tamate HB, Wilson R, Nagata J, Tatsuzawa S, Swanson GM, et al. (2001) Bottlenecks, drift and differentiation: The population structure and demographic history of sika deer (Cervus nippon) in the Japanese archipelago. Mol Ecol 10: 1357-1370 (Pubitemid 32526112)
3. Huelsenbeck JP, Ronquist F (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755 (Pubitemid 32851390)
4. Miyagi Prefecture (2010) Conservation and management plan for sika deer (Cervus nippon) of the Oshika Peninsula (2010 Revised Edition) (in Japanese: Available at http://www.pref. miyagi.jp/sizenhogo/seibutu/honyurui/sika/ 22sikakanri.htm)
5. Nabata D, Masuda R, Takahashi O, Nagata J (2004) Bottleneck effects on the sika deer Cervus nippon population in Hokkaido, revealed by ancient DNA analysis. Zool Sci 21: 473-481
6. Nagata J, Masuda R, Kaji K, Kaneko M, Yoshida MC (1998) Genetic variation and population structure of the Japanese sika deer (Cervus nippon) in Hokkaido Island, based on mitochondrial Dloop sequences. Mol Ecol 7: 871-877 (Pubitemid 28348678)
7. Nagata J, Masuda R, Tamate HB, Hamasaki S, Ochiai K, Asada M, et al. (1999) Two genetically distinct lineages of the sika deer, Cervus nippon, in Japanese Islands: Comparison of mitochondrial D-loop region sequences. Mol Phylogenet Evol 13: 511-519 (Pubitemid 129499357)
8. Shimazaki A, Miyashita T (2002) Deer browsing reduces leaf damage by herbivorous insects through an induced response of the host plant. Ecol Res 17: 527-533 (Pubitemid 41324075)
9. Takatsuki S (1992) Foot morphology and distribution of Sika deer in relation to snow. Ecol Res 7: 19-23 (Pubitemid 23398884)
10. Takatsuki S, Hirabuki Y (1998) Effects of sika deer browsing on the structure and regeneration of the Abies firma forest on Kinkazan Island, northern Japan. J Sustain Forest 6: 203-221
11. Takatsuki S, Suzuki K, Suzuki I (1994) A mass-mortality of Sika deer on Kinkazan Island, northern Japan. Ecol Res 9: 215-223 (Pubitemid 2121990)
12. Tamate BH (2009) Evolutionary significance of admixture and fragmentation of sika deer populations in Japan. In "Sika Deer-Biology and Management of Native and Introduced Populations" Ed by DR McCullough, S Takatsuki, K Kaji, Springer, Tokyo, Berlin, Heidelberg, New York, pp 43-60
13. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599 (Pubitemid 47236692)
14. Tokida K, Maruyama N, Ito T, Furubayashi K, Abe E (1980) Factors affecting the geographical distribution of sika deer. Report on Animal Distributions-Mammal. Japan Wildlife Research Center, Tokyo, pp 38-68 (in Japanese with English summary)
15. Walker BL (2001) Commercial growth and environmental change in early modern Japan: Hachinohe's Wild Boar Famine of 1749. J Asian Stud 60: 329-351 (Pubitemid 33796990)
16. Yamada M, Hosoi E, Tamate HB, Nagata L, Tatsuzawa S, Tado H, et al. (2006) Distribution of two distinct lineages of sika deer (Cervus nippon) on Shikoku Island revealed by mitochondrial DNA analysis. Mammal Study 31: 23-28
17. Yoshio M, Asada M, Ochiai K, Goka K, Murase K, Miyashita T, et al. (2008) Spatially heterogeneous distribution of mtDNA haplotypes in a sika deer (Cervus nippon) population on the Boso Peninsula, central Japan. Mammal Study 33: 59-69
18. Yuasa T, Nagata J, Hamasaki S, Tsuruga H, Furubayashi K (2000) southern Kantoh, revealed by mitochondrial D-loop sequences. Ecol Res 22: 97-106