메뉴 건너뛰기




Volumn 18, Issue 2, 2012, Pages 81-90

Genetic features of cerebrospinal fluid-derived subtype B HIV-1 tat

(19)  Choi, Jun Yong a   Hightower, George K b   Wong, Joseph K c   Heaton, Robert b   Woods, Steven b   Grant, Igor b   Marcotte, Thomas D b   Ellis, Ronald J b   Letendre, Scott L b   Collier, Ann C d   Marra, Christina M d   Clifford, David B e   Gelman, Benjamin B f   McArthur, Justin C g   Morgello, Susan h   Simpson, David M h   McCutchan, J Allen b   Richman, Douglas D b,i   Smith, Davey M b,i  


Author keywords

Central nervous system; Compartmentalization; HIV; Tat

Indexed keywords

ANTIRETROVIRUS AGENT; TRANSACTIVATOR PROTEIN;

EID: 84863701773     PISSN: 13550284     EISSN: 15382443     Source Type: Journal    
DOI: 10.1007/s13365-011-0059-9     Document Type: Article
Times cited : (17)

References (49)
  • 1
    • 69749116487 scopus 로고    scopus 로고
    • Attenuated neurotoxicity of the transactivation-defective HIV-1 Tat protein in hippocampal cell cultures
    • Aksenov MY, Aksenova MV, Mactutus CF, Booze RM (2009) Attenuated neurotoxicity of the transactivation-defective HIV-1 Tat protein in hippocampal cell cultures. Exp Neurol 219:586-590
    • (2009) Exp Neurol , vol.219 , pp. 586-590
    • Aksenov, M.Y.1    Aksenova, M.V.2    MacTutus, C.F.3    Booze, R.M.4
  • 6
    • 0026528771 scopus 로고
    • Structural features in TAR RNA of human and simian immunodeficiency viruses: A phylogenetic analysis
    • Berkhout B (1992) Structural features in TAR RNA of human and simian immunodeficiency viruses: a phylogenetic analysis. Nucleic Acids Res 20:27-31
    • (1992) Nucleic Acids Res , vol.20 , pp. 27-31
    • Berkhout, B.1
  • 9
    • 0023990358 scopus 로고
    • Tat protein from human immunodeficiency virus forms a metal-linked dimer
    • Frankel AD, Bredt DS, Pabo CO (1988) Tat protein from human immunodeficiency virus forms a metal-linked dimer. Science 240:70-73
    • (1988) Science , vol.240 , pp. 70-73
    • Frankel, A.D.1    Bredt, D.S.2    Pabo, C.O.3
  • 10
    • 4344592441 scopus 로고    scopus 로고
    • The structure of HIV-1 genomic RNA in the gp120 gene determines a recombination hot spot in vivo
    • DOI 10.1074/jbc.M405476200
    • Galetto R, Moumen A, Giacomoni V, Veron M, Charneau P, Negroni M (2004) The structure of HIV-1 genomic RNA in the gp120 gene determines a recombination hot spot in vivo. J Biol Chem 279:36625-36632 (Pubitemid 39129008)
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.35 , pp. 36625-36632
    • Galetto, R.1    Moumen, A.2    Giacomoni, V.3    Veron, M.4    Charneau, P.5    Negroni, M.6
  • 11
    • 0023579001 scopus 로고
    • Evidence for early central nervous system involvement in the acquired immunodeficiency syndrome (AIDS) and other human immunodeficiency virus (HIV) infections. Studies with neuropsychologic testing and magnetic resonance imaging
    • Grant I, Atkinson JH, Hesselink JR, Kennedy CJ, Richman DD, Spector SA, McCutchan JA (1987) Evidence for early central nervous system involvement in the acquired immunodeficiency syndrome (AIDS) and other human immunodeficiency virus (HIV) infections. Studies with neuropsychologic testing and magnetic resonance imaging Ann Intern Med 107:828-836 (Pubitemid 18014233)
    • (1987) Annals of Internal Medicine , vol.107 , Issue.6 , pp. 828-836
    • Grant, I.1    Atkinson, J.H.2    Hesselink, J.R.3    Kennedy, C.J.4    Richman, D.D.5    Spector, S.A.6    McCutchan, J.A.7
  • 12
    • 23144433822 scopus 로고    scopus 로고
    • PHYML Online - A web server for fast maximum likelihood-based phylogenetic inference
    • DOI 10.1093/nar/gki352
    • Guindon S, Lethiec F, Duroux P, Gascuel O (2005) PHYML Online-a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res 33:W557-W559 (Pubitemid 44529983)
    • (2005) Nucleic Acids Research , vol.33 , Issue.WEB. SERV. ISS.
    • Guindon, S.1    Lethiec, F.2    Duroux, P.3    Gascuel, O.4
  • 13
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98
    • (1999) Nucleic Acids Symp ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 16
    • 0022407895 scopus 로고
    • Isolation of HTLV-III from cerebrospinal fluid and neural tissues of patients with neurologic syndromes related to the acquired immunodeficiency syndrome
    • Ho DD, Rota TR, Schooley RT, Kaplan JC, Allan JD, Groopman JE, Resnick L, Felsenstein D, Andrews CA, Hirsch MS (1985) Isolation of HTLV-III from cerebrospinal fluid and neural tissues of patients with neurologic syndromes related to the acquired immunodeficiency syndrome. N Engl J Med 313:1493-1497 (Pubitemid 16182477)
    • (1985) New England Journal of Medicine , vol.313 , Issue.24 , pp. 1493-1497
    • Ho, D.D.1    Rota, T.R.2    Schooley, R.T.3
  • 17
    • 0030583562 scopus 로고    scopus 로고
    • Structural characterization of the metal binding site in the cysteine-rich region of HIV-1 Tat protein
    • Huang HW, Wang KT (1996) Structural characterization of the metal binding site in the cysteine-rich region of HIV-1 Tat protein. Biochem Biophys Res Commun 227:615-621
    • (1996) Biochem Biophys Res Commun , vol.227 , pp. 615-621
    • Huang, H.W.1    Wang, K.T.2
  • 18
    • 0035912198 scopus 로고    scopus 로고
    • Pathways to neuronal injury and apoptosis in HIV-associated dementia
    • DOI 10.1038/35073667
    • Kaul M, Garden GA, Lipton SA (2001) Pathways to neuronal injury and apoptosis in HIV-associated dementia. Nature 410:988-994 (Pubitemid 32335850)
    • (2001) Nature , vol.410 , Issue.6831 , pp. 988-994
    • Kaul, M.1    Garden, G.A.2    Lipton, S.A.3
  • 19
    • 0027503889 scopus 로고
    • V3 sequences of paired HIV-1 isolates from blood and cerebrospinal fluid cluster according to host and show variation related to the clinical stage of disease
    • Keys B, Karis J, Fadeel B, Valentin A, Norkrans G, Hagberg L, Chiodi F (1993) V3 sequences of paired HIV-1 isolates from blood and cerebrospinal fluid cluster according to host and show variation related to the clinical stage of disease. Virology 196:475-483
    • (1993) Virology , vol.196 , pp. 475-483
    • Keys, B.1    Karis, J.2    Fadeel, B.3    Valentin, A.4    Norkrans, G.5    Hagberg, L.6    Chiodi, F.7
  • 20
    • 0026739607 scopus 로고
    • Signature pattern analysis: A method for assessing viral sequence relatedness
    • Korber B, Myers G (1992) Signature pattern analysis: a method for assessing viral sequence relatedness. AIDS Res Hum Retroviruses 8:1549-1560
    • (1992) AIDS Res Hum Retroviruses , vol.8 , pp. 1549-1560
    • Korber, B.1    Myers, G.2
  • 21
    • 17744396121 scopus 로고    scopus 로고
    • Not so different after all: A comparison of methods for detecting amino acid sites under selection
    • DOI 10.1093/molbev/msi105
    • Kosakovsky Pond SL, Frost SD (2005) Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol Biol Evol 22:1208-1222 (Pubitemid 40577758)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.5 , pp. 1208-1222
    • Kosakovsky Pond, S.L.1    Frost, S.D.W.2
  • 23
    • 0032412520 scopus 로고    scopus 로고
    • HIV-1 protein tat induces apoptosis of hippocampal neurons by a mechanism involving caspase activation, calcium overload, and oxidative stress
    • DOI 10.1006/exnr.1998.6958
    • Kruman II, Nath A, Mattson MP (1998) HIV-1 protein Tat induces apoptosis of hippocampal neurons by a mechanism involving caspase activation, calcium overload, and oxidative stress. Exp Neurol 154:276-288 (Pubitemid 29044201)
    • (1998) Experimental Neurology , vol.154 , Issue.2 , pp. 276-288
    • Kruman, I.I.1    Nath, A.2    Mattson, M.P.3
  • 24
    • 70349900678 scopus 로고    scopus 로고
    • Role of Tat protein in HIV neuropathogenesis
    • Li W, Li G, Steiner J, Nath A (2009) Role of Tat protein in HIV neuropathogenesis. Neurotox Res 16:205-220
    • (2009) Neurotox Res , vol.16 , pp. 205-220
    • Li, W.1    Li, G.2    Steiner, J.3    Nath, A.4
  • 25
    • 41849099281 scopus 로고    scopus 로고
    • Clade-specific differences in neurotoxicity of human immunodeficiency virus-1 B and C Tat of human neurons: Significance of dicysteine C30C31 motif
    • DOI 10.1002/ana.21292
    • Mishra M, Vetrivel S, Siddappa NB, Ranga U, Seth P (2008) Cladespecific differences in neurotoxicity of human immunodeficiency virus-1 B and C Tat of human neurons: significance of dicysteine C30C31 motif. Ann Neurol 63:366-376 (Pubitemid 351499866)
    • (2008) Annals of Neurology , vol.63 , Issue.3 , pp. 366-376
    • Mishra, M.1    Vetrivel, S.2    Siddappa, N.B.3    Ranga, U.4    Seth, P.5
  • 26
    • 1842450267 scopus 로고    scopus 로고
    • 2+ binding to cysteine-rich domain of extracellular human immunodeficiency virus type 1 Tat protein is associated with Tat protein-induced apoptosis
    • DOI 10.1089/088922204322996536
    • Misumi S, Takamune N, Ohtsubo Y, Waniguchi K, Shoji S (2004) Zn2+ binding to cysteine-rich domain of extracellular human immunodeficiency virus type 1 Tat protein is associated with Tat protein-induced apoptosis. AIDS Res Hum Retroviruses 20:297-304 (Pubitemid 38429402)
    • (2004) AIDS Research and Human Retroviruses , vol.20 , Issue.3 , pp. 297-304
    • Misumi, S.1    Takamune, N.2    Ohtsubo, Y.3    Waniguchi, K.4    Shoji, S.5
  • 28
    • 0030068995 scopus 로고    scopus 로고
    • Identification of a human immunodeficiency virus type 1 Tat epitope that is neuroexcitatory and neurotoxic
    • Nath A, Psooy K, Martin C, Knudsen B, Magnuson DS, Haughey N, Geiger JD (1996) Identification of a human immunodeficiency virus type 1 Tat epitope that is neuroexcitatory and neurotoxic. J Virol 70:1475-1480 (Pubitemid 26062905)
    • (1996) Journal of Virology , vol.70 , Issue.3 , pp. 1475-1480
    • Nath, A.1    Psooy, K.2    Martin, C.3    Knudsen, B.4    Magnuson, D.S.K.5    Haughey, N.6    Geiger, J.D.7
  • 30
    • 0026717107 scopus 로고
    • Human immunodeficiency virus type 1 gag-pol frameshifting is dependent on downstream mRNA secondary structure: Demonstration by expression in vivo
    • Parkin NT, Chamorro M, Varmus HE (1992) Human immunodeficiency virus type 1 gag-pol frameshifting is dependent on downstream mRNA secondary structure: demonstration by expression in vivo. J Virol 66:5147-5151
    • (1992) J Virol , vol.66 , pp. 5147-5151
    • Parkin, N.T.1    Chamorro, M.2    Varmus, H.E.3
  • 32
    • 17744395033 scopus 로고    scopus 로고
    • Datamonkey: Rapid detection of selective pressure on individual sites of codon alignments
    • DOI 10.1093/bioinformatics/bti320
    • Pond SL, Frost SD (2005) Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics 21:2531-2533 (Pubitemid 40731616)
    • (2005) Bioinformatics , vol.21 , Issue.10 , pp. 2531-2533
    • Kosakovsky Pond, S.L.1    Frost, S.D.W.2
  • 33
    • 15844406550 scopus 로고    scopus 로고
    • HyPhy: Hypothesis testing using phylogenies
    • DOI 10.1093/bioinformatics/bti079
    • Pond SL, Frost SD, Muse SV (2005) HyPhy: hypothesis testing using phylogenies. Bioinformatics 21:676-679 (Pubitemid 40424796)
    • (2005) Bioinformatics , vol.21 , Issue.5 , pp. 676-679
    • Kosakovsky Pond, S.L.1    Frost, S.D.W.2    Muse, S.V.3
  • 35
    • 0028359851 scopus 로고
    • Demented and nondemented patients with AIDS differ in brain-derived human immunodeficiency virus type 1 envelope sequences
    • Power C, McArthur JC, Johnson RT, Griffin DE, Glass JD, Perryman S, Chesebro B (1994) Demented and nondemented patients with AIDS differ in brain-derived human immunodeficiency virus type 1 envelope sequences. J Virol 68:4643-4649 (Pubitemid 24183062)
    • (1994) Journal of Virology , vol.68 , Issue.7 , pp. 4643-4649
    • Power, C.1    McArthur, J.C.2    Johnson, R.T.3    Griffin, D.E.4    Glass, J.D.5    Perryman, S.6    Chesebro, B.7
  • 36
    • 0030591671 scopus 로고    scopus 로고
    • Neurological complications of HIV infection
    • DOI 10.1016/S0140-6736(95)11035-6
    • Price RW (1996) Neurological complications of HIV infection. Lancet 348:445-452 (Pubitemid 26267878)
    • (1996) Lancet , vol.348 , Issue.9025 , pp. 445-452
    • Price, R.W.1
  • 38
    • 77949447172 scopus 로고    scopus 로고
    • RNAstructure: Software for RNA secondary structure prediction and analysis
    • Reuter JS, Mathews DH (2010) RNAstructure: software for RNA secondary structure prediction and analysis. BMC Bioinforma 11:129
    • (2010) BMC Bioinforma , vol.11 , pp. 129
    • Reuter, J.S.1    Mathews, D.H.2
  • 40
    • 23244438578 scopus 로고    scopus 로고
    • Increased human immunodeficiency virus type 1 (HIV-1) env compartmentalization in the presence of HIV-1-associated dementia
    • DOI 10.1128/JVI.79.16.10830-10834.2005
    • Ritola K, Robertson K, Fiscus SA, Hall C, Swanstrom R (2005) Increased human immunodeficiency virus type 1 (HIV-1) env compartmentalization in the presence of HIV-1-associated dementia. J Virol 79:10830-10834 (Pubitemid 41098622)
    • (2005) Journal of Virology , vol.79 , Issue.16 , pp. 10830-10834
    • Ritola, K.1    Robertson, K.2    Fiscus, S.A.3    Hall, C.4    Swanstrom, R.5
  • 43
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680 (Pubitemid 24354800)
    • (1994) Nucleic Acids Research , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 44
    • 57049152936 scopus 로고    scopus 로고
    • Evidence of a novel RNA secondary structure in the coding region of HIV-1 pol gene
    • Wang Q, Barr I, Guo F, Lee C (2008) Evidence of a novel RNA secondary structure in the coding region of HIV-1 pol gene. RNA 14:2478-2488
    • (2008) RNA , vol.14 , pp. 2478-2488
    • Wang, Q.1    Barr, I.2    Guo, F.3    Lee, C.4
  • 47
    • 0031041375 scopus 로고    scopus 로고
    • In vivo compartmentalization of human immunodeficiency virus: Evidence from the examination of pol sequences from autopsy tissues
    • Wong JK, Ignacio CC, Torriani F, Havlir D, Fitch NJ, Richman DD (1997) In vivo compartmentalization of human immunodeficiency virus: evidence from the examination of pol sequences from autopsy tissues. J Virol 71:2059-2071 (Pubitemid 27078584)
    • (1997) Journal of Virology , vol.71 , Issue.3 , pp. 2059-2071
    • Wong, J.K.1    Ignacio, C.C.2    Torriani, F.3    Havlir, D.4    Fitch, N.J.S.5    Richman, D.D.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.