Modeling of the modulation by buffers of Ca2+ release through clusters of IP3 receptors

Biophysical Journal

Volumn 97, Issue 4, 2009, Pages 992-1002

  Zeller, S ^a   Rudiger S ^b   Engel, H ^a   Sneyd, J ^c   Warnecke, G ^d   Parker, I ^e   Falcke, M ^f,g  

^a TECHNISCHE UNIVERSITÄT BERLIN   (Germany)

^b HUMBOLDT UNIVERSITY   (Germany)

^c UNIVERSITY OF AUCKLAND   (New Zealand)

^d OTTO VON GUERICKE UNIVERSITY   (Germany)

^e UNIVERSITY OF CALIFORNIA   (United States)

^f MAX DELBRÜCK CENTER FOR MOLECULAR MEDICINE   (Germany)

^g HAHN MEITNER INSTITUT   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BUFFER; CALCIUM ION; INOSITOL 1,4,5 TRISPHOSPHATE RECEPTOR;

ARTICLE; CALCIUM TRANSPORT; CHEMICAL MODEL; CONTROLLED STUDY; CYTOSOL; DIFFUSION COEFFICIENT; ENDOPLASMIC RETICULUM; FLUORESCENCE; MODULATION;

EID: 69449086015     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2009.05.050     Document Type: Article

References (41)

1. 2+ liberation in Xenopus oocytes: hot spots, puffs and blips. Cell Calcium. 20:105-121.
2. Lechleiter, J., S. Girard, E. Peralta, and D. Clapham. 1991. Spiral calcium wave propagation and annihilation in Xenopus laevis oocytes. Science. 252:123-126. (Pubitemid 21916952)
3. 2+ oscillations. EMBO J. 20:65-76.
4. 2+ signaling. Adv. Phys. 53:255-440.
5. Berridge, M. 1990. Calcium oscillations. J. Biol. Chem. 265:9583-9586.
6. Rooney, T., E. Sass, and A. Thomas. 1989. Characterization of cytosolic calcium oscillations induced by phenylephrine and vasopressin in single Fura-2-loaded hepatocytes. J. Biol. Chem. 264:17131-17141.
7. 3- and calcium-gated channels from endoplasmatic reticulum of cerebellum. Nature. 351:751-754.
8. 2+. Cell Calcium. 32:321-334.
9. 2+ signals are not stereotypic, but reflect activation of different size channel clusters and variable recruitment of channels within a cluster. J. Biol. Chem. 273:27130-27136.
10. Suhara, W., M. Kobayashi, H. Sagara, K. Hamadad, T. Goto, et al. 2006. Visualization of inositol 1,4,5-trisphosphate receptor by atomic force microscopy. Neurosci. Lett. 391:102-107.
11. 2+ waves in Xenopus oocytes. EMBO J. 18:5285-5299.
12. Berridge, M., P. Lipp, and M. Bootman. 2000. The versatility and universality of calcium signaling. Nat. Rev. Mol. Cell Biol. 1:11-22.
13. Rooney, T., S. Joseph, C. Queen, and A. Thomas. 1996. Cyclic GMP induces oscillatory calcium signals in rat hepatocytes. J. Biol. Chem. 271:19817-19825.
14. 2+. Curr. Biol. 9:1115-1118.
15. 2+ release channels. EMBO Rep. 8:1044-1051.
16. 2+-binding protein parvalbumin. J. Physiol. 535:3-16.
17. 2+binding proteins. J. Physiol. 556:447-461.
18. 2+ signals. J. Physiol. 553:775-788.
19. 2+ diffusion. Biophys. J. 67:447-456.
20. Thul, R., and M. Falcke. 2004. Release currents of IP3 receptor channel clusters and concentration profiles. Biophys. J. 86:2660-2673. (Pubitemid 38552675)
21. 2+ dynamics. Biophys. J. 84:28-41.
22. Bentele, K., and M. Falcke. 2007. Quasi-steady approximation for ion channel currents. Biophys. J. 93:2597-2608. (Pubitemid 47607798)
23. 2+ dynamics. Biophys. J. 84:42-56.
24. 2+ oscillate: by chance or by the clock? Biophys. J. 94:2404-2411.
25. Skupin, A., and M. Falcke. 2007. Statistical properties and information content of calcium oscillations. Genome Informatics. 18:44-53.
26. 2+ concentration. Proc. Natl. Acad. Sci. USA. 89:9895-9899.
27. Thomas, R. C., and M. Postma. 2007. Dynamic and static calcium gradients inside large snail (Helix aspersa) neurones detected with calcium-sensitive microelectrodes. Cell Calcium. 41:365-378.
28. Adler, E. M., G. J. Augustine, S. N. Duffy, and M. P. Charlton. 1991. Alien intracellular calcium chelators attenuate neurotransmitter release at the squid giant synapse. J. Neurosci. 11:1496-1507.
29. Timmerman, M., and C. Ashley. 1986. FURA-diffusion and its use as an indicator of transient free calcium changes in single striated muscle cells. FEBS. 209:1-8. (Pubitemid 17224564)
30. 2+ diffusion near the membrane: implications for secretion in neuroendocrine cells. Biophys. J. 72:674-690.
31. Schmidt, H., E. B. Brown, B. Schwaller, and J. Eilers. 2003. Diffusional mobility of parvalbumin in spiny dendrites of cerebellar Purkinje neurons quantified by fluorescence recovery after photobleaching. Biophys. J. 84:2599-2608. (Pubitemid 36373580)
32. Schmidt, H., O. Arendt, E. B. Brown, B. Schwaller, and J. Eilers. 2007. Parvalbumin is freely mobile in axons, somata and nuclei of cerebellar Purkinje neurones. J. Neurochem. 100:727-735. (Pubitemid 46095622)
33. 2+ signaling in SH-SY5Y cells utilizing membrane-permeant caged IP3. Cell Calcium. 45:65-76.
34. 2+ signals by simultaneous multi-focal imaging. Cell Calcium. 43:367-374.
35. 2+ puffs in intact mammalian cells. Proc. Natl. Acad. Sci. 106:6404-6409.
36. 2+ signals in mouse pancreatic acinar cells. J. Physiol. 520:187-201.
37. 2+. Nature. 458:655-659.
38. 2+ oscillations and interspike interval distributions. In Noise and Fluctuations in Biological, Biophysical, and Biomedical Systems. S. M. Bezrukov, editor. Proc. SPIE. 6602:0M1-0M12.
39. Ölveczky, B., and A. Verkman. 1998. Monte Carlo analysis of obstructed diffusion in three dimensions: application to molecular diffusion in organelles. Biophys. J. 74:2722-2730. (Pubitemid 28225266)
40. Schipke, C. G., A. Heidemann, A. Skupin, O. Peters, M. Falcke, et al. 2008. Temperature and nitric oxide control spontaneous calcium transients in astrocytes. Cell Calcium. 43:285-295. (Pubitemid 351255439)
41. Henry, H., and H. Levine. 2003. Wave nucleation rate in excitable systems in the low noise limit. Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 68:0131914.