-
1
-
-
48749148224
-
Rattle-a velocity version of the shake algorithm for molecular-dynamics calculations
-
10.1016/0021-9991(83)90014-1 1:CAS:528:DyaL2cXjvFOntw%3D%3D
-
HC Andersen 1983 Rattle-a velocity version of the shake algorithm for molecular-dynamics calculations J Comput Phys 52 24 10.1016/0021-9991(83)90014-1 1:CAS:528:DyaL2cXjvFOntw%3D%3D
-
(1983)
J Comput Phys
, vol.52
, pp. 24
-
-
Andersen, H.C.1
-
3
-
-
33846823909
-
Particle mesh Ewald: An n.Log(n) method for Ewald sums in large systems
-
10.1063/1.464397 1:CAS:528:DyaK3sXks1Ohsr0%3D
-
T Darden D York L Pedersen 1993 Particle mesh Ewald: an n.Log(n) method for Ewald sums in large systems J Chem Phys 98 10089 10.1063/1.464397 1:CAS:528:DyaK3sXks1Ohsr0%3D
-
(1993)
J Chem Phys
, vol.98
, pp. 10089
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
4
-
-
36449007836
-
Constant-pressure molecular-dynamics simulation: The Langevin piston method
-
10.1063/1.470648 1:CAS:528:DyaK2MXotVentLo%3D
-
SE Feller YH Zhang RW Pastor BR Brooks 1995 Constant-pressure molecular-dynamics simulation: the Langevin piston method J Chem Phys 103 4613 10.1063/1.470648 1:CAS:528:DyaK2MXotVentLo%3D
-
(1995)
J Chem Phys
, vol.103
, pp. 4613
-
-
Feller, S.E.1
Zhang, Y.H.2
Pastor, R.W.3
Brooks, B.R.4
-
5
-
-
0029619259
-
Knowledge-based protein secondary structure assignment
-
DOI 10.1002/prot.340230412
-
D Frishman P Argos 1995 Knowledge-based protein secondary structure assignment Proteins 23 566 10.1002/prot.340230412 1:CAS:528:DyaK28Xht1yluw%3D%3D (Pubitemid 26009520)
-
(1995)
Proteins: Structure, Function and Genetics
, vol.23
, Issue.4
, pp. 566-579
-
-
Frishman, D.1
Argos, P.2
-
6
-
-
0037645333
-
-
Theoretical Biophysics Group, Institute for Medical Optics, Ludwig-Maximilian University Munich
-
Grubmuller H (1996) Solvate. Theoretical Biophysics Group, Institute for Medical Optics, Ludwig-Maximilian University, Munich
-
(1996)
Solvate
-
-
Grubmuller, H.1
-
7
-
-
0035941074
-
Self-assembly and mineralization of peptide-amphiphile nanofibers
-
DOI 10.1126/science.1063187
-
JD Hartgerink E Beniash SI Stupp 2001 Self-assembly and mineralization of peptide-amphiphile nanofibers Science 294 1684 10.1126/science.1063187 1:CAS:528:DC%2BD3MXoslequ70%3D (Pubitemid 33104832)
-
(2001)
Science
, vol.294
, Issue.5547
, pp. 1684-1688
-
-
Hartgerink, J.D.1
Beniash, E.2
Stupp, S.I.3
-
9
-
-
3242887525
-
STRIDE: A web server for secondary structure assignment from known atomic coordinates of proteins
-
DOI 10.1093/nar/gkh429
-
M Heinig D Frishman 2004 STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins Nucleic Acids Res 32 W500 10.1093/nar/gkh429 1:CAS:528:DC%2BD2cXlvFKmsrw%3D (Pubitemid 38997383)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.WEB SERVER ISS.
-
-
Heinig, M.1
Frishman, D.2
-
10
-
-
0029878720
-
VMD: Visual molecular dynamics
-
DOI 10.1016/0263-7855(96)00018-5
-
W Humphrey A Dalke K Schulten 1996 VMD: visual molecular dynamics J Mol Graph 14 33 38 10.1016/0263-7855(96)00018-5 1:CAS:528:DyaK28Xis12nsrg%3D (Pubitemid 26152973)
-
(1996)
Journal of Molecular Graphics
, vol.14
, Issue.1
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
11
-
-
0003505419
-
-
IUPAC. 2 Blackwell Scientific Publications Oxford
-
IUPAC (1997) Compendium of chemical terminology, 2nd edn. Blackwell Scientific Publications, Oxford
-
(1997)
Compendium of Chemical Terminology
-
-
-
12
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
10.1063/1.445869 1:CAS:528:DyaL3sXksF2htL4%3D
-
WL Jorgensen J Chandrasekhar JD Madura RW Impey ML Klein 1983 Comparison of simple potential functions for simulating liquid water J Chem Phys 79 926 10.1063/1.445869 1:CAS:528:DyaL3sXksF2htL4%3D
-
(1983)
J Chem Phys
, vol.79
, pp. 926
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
13
-
-
0042415783
-
NAMD2: Greater scalability for parallel molecular dynamics
-
10.1006/jcph.1999.6201 1:CAS:528:DyaK1MXivFejt7Y%3D
-
L Kale R Skeel M Bhandarkar R Brunner A Gursoy N Krawetz J Phillips A Shinozaki K Varadarajan K Schulten 1999 NAMD2: greater scalability for parallel molecular dynamics J Comput Phys 151 283 10.1006/jcph.1999.6201 1:CAS:528:DyaK1MXivFejt7Y%3D
-
(1999)
J Comput Phys
, vol.151
, pp. 283
-
-
Kale, L.1
Skeel, R.2
Bhandarkar, M.3
Brunner, R.4
Gursoy, A.5
Krawetz, N.6
Phillips, J.7
Shinozaki, A.8
Varadarajan, K.9
Schulten, K.10
-
14
-
-
0027411181
-
Thermodynamic β-sheet propensities measured using a zinc-finger host peptide
-
DOI 10.1038/362267a0
-
CWA Kim JM Berg 1993 Thermodynamic beta-sheet propensities measured using a zinc-finger host peptide Nature 362 267 10.1038/362267a0 1:CAS:528: DyaK3sXisFSjt7w%3D (Pubitemid 23093636)
-
(1993)
Nature
, vol.362
, Issue.6417
, pp. 267-270
-
-
Kim, C.A.1
Berg, J.M.2
-
15
-
-
0027595948
-
Tissue engineering
-
10.1126/science.8493529 1:CAS:528:DyaK3sXis1Sktrs%3D
-
R Langer JP Vacanti 1993 Tissue engineering Science 260 920 10.1126/science.8493529 1:CAS:528:DyaK3sXis1Sktrs%3D
-
(1993)
Science
, vol.260
, pp. 920
-
-
Langer, R.1
Vacanti, J.P.2
-
16
-
-
79952585497
-
Atomistic molecular dynamics simulations of peptide amphiphile self-assembly into cylindrical nanofibers
-
10.1021/ja110966y 1:CAS:528:DC%2BC3MXisVajsL0%3D
-
O-S Lee SI Stupp GC Schatz 2011 Atomistic molecular dynamics simulations of peptide amphiphile self-assembly into cylindrical nanofibers J Am Chem Soc 133 3677 10.1021/ja110966y 1:CAS:528:DC%2BC3MXisVajsL0%3D
-
(2011)
J Am Chem Soc
, vol.133
, pp. 3677
-
-
Lee, O.-S.1
Stupp, S.I.2
Schatz, G.C.3
-
17
-
-
0018093765
-
Conformational preferences of amino-acids in globular proteins
-
10.1021/bi00613a026 1:CAS:528:DyaE1cXlslGgs7w%3D
-
M Levitt 1978 Conformational preferences of amino-acids in globular proteins Biochemistry 17 4277 10.1021/bi00613a026 1:CAS:528:DyaE1cXlslGgs7w%3D
-
(1978)
Biochemistry
, vol.17
, pp. 4277
-
-
Levitt, M.1
-
18
-
-
6344260593
-
An all-atom empirical energy function for the simulation of nucleic-acids
-
10.1021/ja00153a017 1:CAS:528:DyaK2MXpt12rs7Y%3D
-
AD Mackerell J Wiorkewiczkuczera M Karplus 1995 An all-atom empirical energy function for the simulation of nucleic-acids J Am Chem Soc 117 11946 10.1021/ja00153a017 1:CAS:528:DyaK2MXpt12rs7Y%3D
-
(1995)
J Am Chem Soc
, vol.117
, pp. 11946
-
-
MacKerell, A.D.1
Wiorkewiczkuczera, J.2
Karplus, M.3
-
19
-
-
0024065282
-
Circular-dichroism studies of distorted alpha-helices, twisted beta-sheets, and beta-turns
-
10.1016/0301-4622(88)80011-5 1:STN:280:DyaL1M7ms1yisw%3D%3D
-
MC Manning M Illangasekare RW Woody 1988 Circular-dichroism studies of distorted alpha-helices, twisted beta-sheets, and beta-turns Biophys Chem 31 77 86 10.1016/0301-4622(88)80011-5 1:STN:280:DyaL1M7ms1yisw%3D%3D
-
(1988)
Biophys Chem
, vol.31
, pp. 77-86
-
-
Manning, M.C.1
Illangasekare, M.2
Woody, R.W.3
-
20
-
-
36449003554
-
Constant-pressure molecular-dynamics algorithms
-
10.1063/1.467468 1:CAS:528:DyaK2cXmtFeht7o%3D
-
GJ Martyna DJ Tobias ML Klein 1994 Constant-pressure molecular-dynamics algorithms J Chem Phys 101 4177 10.1063/1.467468 1:CAS:528:DyaK2cXmtFeht7o%3D
-
(1994)
J Chem Phys
, vol.101
, pp. 4177
-
-
Martyna, G.J.1
Tobias, D.J.2
Klein, M.L.3
-
22
-
-
33744946043
-
Self-assembly of peptide-amphiphile nanofibers: The roles of hydrogen bonding and amphiphilic packing
-
DOI 10.1021/ja060573x
-
SE Paramonov HW Jun JD Hartgerink 2006 Self-assembly of peptide-amphiphile nanofibers: the roles of hydrogen bonding and amphiphilic packing J Am Chem Soc 128 7291 10.1021/ja060573x 1:CAS:528:DC%2BD28XksFGgs7c%3D (Pubitemid 43849130)
-
(2006)
Journal of the American Chemical Society
, vol.128
, Issue.22
, pp. 7291-7298
-
-
Paramonov, S.E.1
Jun, H.-W.2
Hartgerink, J.D.3
-
23
-
-
31544469198
-
Modulation of peptide-amphiphile nanofibers via phospholipid inclusions
-
DOI 10.1021/bm050798k
-
SE Paramonov HW Jun JD Hartgerink 2006 Modulation of peptide-amphiphile nanofibers via phospholipid inclusions Biomacromolecules 7 1 24 26 10.1021/bm050798k 1:CAS:528:DC%2BD2MXhtlWmurvE (Pubitemid 43154473)
-
(2006)
Biomacromolecules
, vol.7
, Issue.1
, pp. 24-26
-
-
Paramonov, S.E.1
Jun, H.-W.2
Hartgerink, J.D.3
-
24
-
-
77951682263
-
Tuning supramolecular rigidity of peptide fibers through molecular structure
-
10.1021/ja908560n 1:CAS:528:DC%2BC3cXksValsLc%3D
-
ET Pashuck HG Cui SI Stupp 2010 Tuning supramolecular rigidity of peptide fibers through molecular structure J Am Chem Soc 132 6041 10.1021/ja908560n 1:CAS:528:DC%2BC3cXksValsLc%3D
-
(2010)
J Am Chem Soc
, vol.132
, pp. 6041
-
-
Pashuck, E.T.1
Cui, H.G.2
Stupp, S.I.3
-
25
-
-
0020991935
-
Structural-properties of protein beta-sheets
-
10.1016/0079-6107(83)90005-6 1:CAS:528:DyaL2cXpvVeksA%3D%3D
-
FR Salemme 1983 Structural-properties of protein beta-sheets Prog Biophys Mol Biol 42 95 10.1016/0079-6107(83)90005-6 1:CAS:528:DyaL2cXpvVeksA%3D%3D
-
(1983)
Prog Biophys Mol Biol
, vol.42
, pp. 95
-
-
Salemme, F.R.1
-
26
-
-
33744800537
-
Expanding frontiers in biomaterials
-
10.1557/mrs2005.276 1:CAS:528:DC%2BD2MXhtlGhsbnI
-
SI Stupp J Donners LS Li A Mata 2005 Expanding frontiers in biomaterials MRS Bull 30 864 10.1557/mrs2005.276 1:CAS:528:DC%2BD2MXhtlGhsbnI
-
(2005)
MRS Bull
, vol.30
, pp. 864
-
-
Stupp, S.I.1
Donners, J.2
Li, L.S.3
Mata, A.4
-
27
-
-
0000175991
-
Calculation of 3-dimensional elastic-constants of polymer crystals. 3. Alpha-forms and gamma-forms of nylon-6
-
10.1021/ma50004a060 1:CAS:528:DyaL3MXktVOru7k%3D
-
K Tashiro H Tadokoro 1981 Calculation of 3-dimensional elastic-constants of polymer crystals. 3. Alpha-forms and gamma-forms of nylon-6 Macromolecules 14 781 10.1021/ma50004a060 1:CAS:528:DyaL3MXktVOru7k%3D
-
(1981)
Macromolecules
, vol.14
, pp. 781
-
-
Tashiro, K.1
Tadokoro, H.2
-
28
-
-
0037665317
-
Calculation of 3-dimensional elastic-constants of polyer crystals. 1. Method of calculation
-
10.1021/ma60065a013 1:CAS:528:DyaE1cXlvVSntLk%3D
-
K Tashiro M Kobayashi H Tadokoro 1978 Calculation of 3-dimensional elastic-constants of polyer crystals. 1. Method of calculation Macromolecules 11 908 10.1021/ma60065a013 1:CAS:528:DyaE1cXlvVSntLk%3D
-
(1978)
Macromolecules
, vol.11
, pp. 908
-
-
Tashiro, K.1
Kobayashi, M.2
Tadokoro, H.3
-
29
-
-
0001414993
-
Calculation of 3-dimensional elastic-constants of polymer crystals. 2. Application to orthorhombic polyethylene and polyvynyl-alcohol
-
10.1021/ma60065a014 1:CAS:528:DyaE1cXlvVSntLY%3D
-
K Tashiro M Kobayashi H Tadokoro 1978 Calculation of 3-dimensional elastic-constants of polymer crystals. 2. Application to orthorhombic polyethylene and polyvynyl-alcohol Macromolecules 11 914 10.1021/ma60065a014 1:CAS:528:DyaE1cXlvVSntLY%3D
-
(1978)
Macromolecules
, vol.11
, pp. 914
-
-
Tashiro, K.1
Kobayashi, M.2
Tadokoro, H.3
-
30
-
-
78149312776
-
Self-assembling peptide amphiphile promotes plasticity of serotonergic fibers following spinal cord injury
-
10.1002/jnr.22472 1:CAS:528:DC%2BC3cXhtFOqsrzE
-
VM Tysseling V Sahni ET Pashuck D Birch A Hebert C Czeisler SI Stupp JA Kessler 2010 Self-assembling peptide amphiphile promotes plasticity of serotonergic fibers following spinal cord injury J Neurosci Res 88 3161 10.1002/jnr.22472 1:CAS:528:DC%2BC3cXhtFOqsrzE
-
(2010)
J Neurosci Res
, vol.88
, pp. 3161
-
-
Tysseling, V.M.1
Sahni, V.2
Pashuck, E.T.3
Birch, D.4
Hebert, A.5
Czeisler, C.6
Stupp, S.I.7
Kessler, J.A.8
-
31
-
-
43649108455
-
Self-assembling nanofibers inhibit glial scar formation and promote axon elongation after spinal cord injury
-
10.1523/JNEUROSCI.0143-08.2008 1:CAS:528:DC%2BD1cXkslSjur8%3D
-
VM Tysseling-Mattiace V Sahni KL Niece D Birch C Czeisler MG Fehlings SI Stupp JA Kessler 2008 Self-assembling nanofibers inhibit glial scar formation and promote axon elongation after spinal cord injury J Neurosci 28 3814 10.1523/JNEUROSCI.0143-08.2008 1:CAS:528:DC%2BD1cXkslSjur8%3D
-
(2008)
J Neurosci
, vol.28
, pp. 3814
-
-
Tysseling-Mattiace, V.M.1
Sahni, V.2
Niece, K.L.3
Birch, D.4
Czeisler, C.5
Fehlings, M.G.6
Stupp, S.I.7
Kessler, J.A.8
-
32
-
-
46849093387
-
Self-assembled pH-responsive hydrogels composed of the RATEA16 peptide
-
DOI 10.1021/bm701143g
-
Y Zhao H Yokoi M Tanaka T Kinoshita TW Tan 2008 Self-assembled pH-responsive hydrogels composed of the RATEA16 peptide Biomacromolecules 9 1511 10.1021/bm701143g 1:CAS:528:DC%2BD1cXmt1Sru7Y%3D (Pubitemid 351954423)
-
(2008)
Biomacromolecules
, vol.9
, Issue.6
, pp. 1511-1518
-
-
Zhao, Y.1
Yokoi, H.2
Tanaka, M.3
Kinoshita, T.4
Tan, T.5
|