-
1
-
-
85104042765
-
Overview of BioNLP'09 shared task on event extraction
-
Association for Computational Linguistics
-
Kim J.-D., Ohta T., Pyysalo S., Kano Y., Tsujii J., Overview of BioNLP'09 shared task on event extraction Proceedings of the BioNLP Workshop Companion Volume for Shared Task 2009 Association for Computational Linguistics 1 9
-
(2009)
Proceedings of the BioNLP Workshop Companion Volume for Shared Task
, pp. 1-9
-
-
Kim, J.-D.1
Ohta, T.2
Pyysalo, S.3
Kano, Y.4
Tsujii, J.5
-
2
-
-
84901593338
-
Overview of BioNLP shared task 2011
-
Association for Computational Linguistics
-
Kim J.-D., Pyysalo S., Ohta T., Bossy, N. Nguyen R., Nguyen N., Tsujii J., Overview of BioNLP shared task 2011 Proceedings of the BioNLP Workshop Companion Volume for Shared Task 2011 Association for Computational Linguistics 1 6
-
(2011)
Proceedings of the BioNLP Workshop Companion Volume for Shared Task
, pp. 1-6
-
-
Kim, J.-D.1
Pyysalo, S.2
Ohta, T.3
Bossy Nguyen N, R.4
Nguyen, N.5
Tsujii, J.6
-
3
-
-
3042786293
-
A gene network for navigating the literature
-
ARICLE 664
-
Homann R., Valencia A., A gene network for navigating the literature Nature Genetics 2004 36 7, aricle 664
-
(2004)
Nature Genetics
, vol.36
, Issue.7
-
-
Homann, R.1
Valencia, A.2
-
4
-
-
85119983757
-
An intelligent search engine and GUI-based efficient MEDLINE search tool based on deep syntactic parsing
-
Association for Computational Linguistics
-
Ohta T., Miyao Y., Ninomiya T., An intelligent search engine and GUI-based efficient MEDLINE search tool based on deep syntactic parsing Proceedings of the COLING/ACL 2006 Interactive Presentation Sessions 2006 Association for Computational Linguistics 17 20
-
(2006)
Proceedings of the COLING/ACL 2006 Interactive Presentation Sessions
, pp. 17-20
-
-
Ohta, T.1
Miyao, Y.2
Ninomiya, T.3
-
5
-
-
33846664313
-
EBIMed - Text crunching to gather facts for proteins from Medline
-
DOI 10.1093/bioinformatics/btl302
-
Rebholz-Schuhmann D., Kirsch H., Arregui M., Gaudan S., Riethoven M., Stoehr P., EBIMedtext crunching to gather facts for proteins from Medline Bioinformatics 2007 23 2 e237 e244 (Pubitemid 46189663)
-
(2007)
Bioinformatics
, vol.23
, Issue.2
-
-
Rebholz-Schuhmann, D.1
Kirsch, H.2
Arregui, M.3
Gaudan, S.4
Riethoven, M.5
Stoehr, P.6
-
6
-
-
34548561812
-
BioText Search Engine: Beyond abstract search
-
DOI 10.1093/bioinformatics/btm301
-
Hearst M. A., Divoli A., Guturu H. H., Ksikes A., Nakov P., Wooldridge M. A., Ye J., BioText search engine: beyond abstract search Bioinformatics 2007 23 16 2196 2197 (Pubitemid 47394126)
-
(2007)
Bioinformatics
, vol.23
, Issue.16
, pp. 2196-2197
-
-
Hearst, M.A.1
Divoli, A.2
Guturu H.Harendra3
Ksikes, A.4
Nakov, P.5
Wooldridge, M.A.6
Ye, J.7
-
7
-
-
50549096372
-
Yale Image Finder (YIF): A new search engine for retrieving biomedical images
-
Xu S., McCusker J., Krauthammer M., Yale Image Finder (YIF): a new search engine for retrieving biomedical images Bioinformatics 2008 24 17 1968 1970
-
(2008)
Bioinformatics
, vol.24
, Issue.17
, pp. 1968-1970
-
-
Xu, S.1
McCusker, J.2
Krauthammer, M.3
-
8
-
-
80054879615
-
BioNOT: A searchable database of biomedical negated sentences
-
Agarwal S., Yu H., Kohane I., BioNOT: a searchable database of biomedical negated sentences BMC Bioinformatics 2011 12
-
(2011)
BMC Bioinformatics
, vol.12
-
-
Agarwal, S.1
Yu, H.2
Kohane, I.3
-
9
-
-
84857112501
-
Scaling up biomedical event extraction to the entire PubMed
-
Association for Computational Linguistics
-
Bjrne J., Ginter F., Pyysalo S., Tsujii J., Salakoski T., Scaling up biomedical event extraction to the entire PubMed Proceedings of the BioNLP Workshop Companion Volume for Shared Task 2010 Association for Computational Linguistics 28 36
-
(2010)
Proceedings of the BioNLP Workshop Companion Volume for Shared Task
, pp. 28-36
-
-
Bjrne, J.1
Ginter, F.2
Pyysalo, S.3
Tsujii, J.4
Salakoski, T.5
-
12
-
-
84863715053
-
Generalizing biomedical event extraction
-
article S4
-
Bjrne J., Ginter F., Salakoski T., Generalizing biomedical event extraction BMC Bioinformatics 2012 13 supplement 8, article S4
-
(2012)
BMC Bioinformatics
, vol.13
, Issue.SUPPL. 8
-
-
Bjrne, J.1
Ginter, F.2
Salakoski, T.3
-
13
-
-
78651319979
-
Ongoing and future developments at the universal protein resource
-
The Uniprot Consortium
-
The UniProt Consortium, Ongoing and future developments at the universal protein resource Nucleic Acids Research 2011 39 supplement 1 D214 D219
-
(2011)
Nucleic Acids Research
, vol.39
, Issue.SUPPL. 1
-
-
-
14
-
-
58149200954
-
Database resources of the National Center for Biotechnology Information
-
Sayers E. W., Barrett T., Benson D. A., Bolton E., Bryant S. H., Canese K., Chetvernin V., Church D. M., Dicuccio M., Federhen S., Feolo M., Geer L. Y., Helmberg W., Kapustin Y., Landsman D., Lipman D. J., Lu Z., Madden T. L., Madej T., Maglott D. R., Marchler-Bauer A., Miller V., Mizrachi I., Ostell J., Panchenko A., Pruitt K. D., Schuler G. D., Sequeira E., Sherry S. T., Shumway M., Sirotkin K., Slotta D., Souvorov A., Starchenko G., Tatusova T. A., Wagner L., Wang Y., John Wilbur W., Yaschenko E., Ye J., Database resources of the National Center for Biotechnology Information Nucleic Acids Research 2009 38 supplement 1 D5 D16
-
(2009)
Nucleic Acids Research
, vol.38
, Issue.SUPPL. 1
-
-
Sayers, E.W.1
Barrett, T.2
Benson, D.A.3
Bolton, E.4
Bryant, S.H.5
Canese, K.6
Chetvernin, V.7
Church, D.M.8
Dicuccio, M.9
Federhen, S.10
Feolo, M.11
Geer, L.Y.12
Helmberg, W.13
Kapustin, Y.14
Landsman, D.15
Lipman, D.J.16
Lu, Z.17
Madden, T.L.18
Madej, T.19
Maglott, D.R.20
Marchler-Bauer, A.21
Miller, V.22
Mizrachi, I.23
Ostell, J.24
Panchenko, A.25
Pruitt, K.D.26
Schuler, G.D.27
Sequeira, E.28
Sherry, S.T.29
Shumway, M.30
Sirotkin, K.31
Slotta, D.32
Souvorov, A.33
Starchenko, G.34
Tatusova, T.A.35
Wagner, L.36
Wang, Y.37
John Wilbur, W.38
Yaschenko, E.39
Ye, J.40
more..
-
15
-
-
78651289449
-
Ensembl 2011
-
Flicek P., Amode M. R., Barrell D., Beal K., Brent S., Chen Y., Clapham P., Coates G., Fairley S., Fitzgerald S., Gordon L., Hendrix M., Hourlier T., Johnson N., K h ri A., Keefe D., Keenan S., Kinsella R., Kokocinski F., Kulesha E., Larsson P., Longden I., McLaren W., Overduin B., Pritchard B., Riat H. S., Rios D., Ritchie G. R. S., Ruffier M., Schuster M., Sobral D., Spudich G., Tang Y. A., Trevanion S., Vandrovcova J., Vilella A. J., White S., Wilder S. P., Zadissa A., Zamora J., Aken B. L., Birney E., Cunningham F., Dunham I., Durbin R., Fernndez-Suarez X. M., Herrero J., Hubbard T. J. P., Parker A., Proctor G., Vogel J., Searle S. M. J., Ensembl 2011 Nucleic Acids Research 2011 39 1 D800 D806
-
(2011)
Nucleic Acids Research
, vol.39
, Issue.1
-
-
Flicek, P.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Brent, S.5
Chen, Y.6
Clapham, P.7
Coates, G.8
Fairley, S.9
Fitzgerald, S.10
Gordon, L.11
Hendrix, M.12
Hourlier, T.13
Johnson, N.14
Ri A, K.H.15
Keefe, D.16
Keenan, S.17
Kinsella, R.18
Kokocinski, F.19
Kulesha, E.20
Larsson, P.21
Longden, I.22
McLaren, W.23
Overduin, B.24
Pritchard, B.25
Riat, H.S.26
Rios, D.27
Ritchie, G.R.S.28
Ruffier, M.29
Schuster, M.30
Sobral, D.31
Spudich, G.32
Tang, Y.A.33
Trevanion, S.34
Vandrovcova, J.35
Vilella, A.J.36
White, S.37
Wilder, S.P.38
Zadissa, A.39
Zamora, J.40
Aken, B.L.41
Birney, E.42
Cunningham, F.43
Dunham, I.44
Durbin, R.45
Fernndez-Suarez, X.M.46
Herrero, J.47
Hubbard, T.J.P.48
Parker, A.49
Proctor, G.50
Vogel, J.51
Searle, S.M.J.52
more..
-
16
-
-
75549090948
-
Ensembl genomes: Extending ensembl across the taxonomic space
-
Kersey P. J., Lawson D., Birney E., Derwent P. S., Haimel M., Herrero J., Keenan S., Kerhornou A., Koscielny G., Khri A., Kinsella R. J., Kulesha E., Maheswari U., Megy K., Nuhn M., Proctor G., Staines D., Valentin F., Vilella A. J., Yates A., Ensembl genomes: extending ensembl across the taxonomic space Nucleic Acids Research 2009 38 supplement 1 D563 D569
-
(2009)
Nucleic Acids Research
, vol.38
, Issue.SUPPL. 1
-
-
Kersey, P.J.1
Lawson, D.2
Birney, E.3
Derwent, P.S.4
Haimel, M.5
Herrero, J.6
Keenan, S.7
Kerhornou, A.8
Koscielny, G.9
Khri, A.10
Kinsella, R.J.11
Kulesha, E.12
Maheswari, U.13
Megy, K.14
Nuhn, M.15
Proctor, G.16
Staines, D.17
Valentin, F.18
Vilella, A.J.19
Yates, A.20
more..
-
17
-
-
0141496132
-
Ultraconservative online algorithms for multiclass problems
-
Crammer K., Singer Y., Ultraconservative online algorithms for multiclass problems Journal of Machine Learning Research 2003 3 4-5 951 991
-
(2003)
Journal of Machine Learning Research
, vol.3
, Issue.45
, pp. 951-991
-
-
Crammer, K.1
Singer, Y.2
-
18
-
-
0037941585
-
Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data
-
DOI 10.1038/ng1165
-
Segal E., Shapira M., Regev A., Pe'er D., Botstein D., Koller D., Friedman N., Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data Nature Genetics 2003 34 2 166 176 (Pubitemid 36666927)
-
(2003)
Nature Genetics
, vol.34
, Issue.2
, pp. 166-176
-
-
Segal, E.1
Shapira, M.2
Regev, A.3
Pe'er, D.4
Botstein, D.5
Koller, D.6
Friedman, N.7
-
19
-
-
77954190136
-
Complex event extraction at PubMed scale
-
Bjrne J., Ginter F., Pyysalo S., Tsujii J., Salakoski T., Complex event extraction at PubMed scale Bioinformatics 2010 26 12 i382 i390
-
(2010)
Bioinformatics
, vol.26
, Issue.12
-
-
Bjrne, J.1
Ginter, F.2
Pyysalo, S.3
Tsujii, J.4
Salakoski, T.5
-
20
-
-
84874240499
-
Integrating large-scale text mining and co-expression networks: Targeting NADP(H) metabolism in E. coli with event extraction
-
Kaewphan S., Kreula S., Van Landeghem S., Van de Peer Y., Jones P., Ginter F., Integrating large-scale text mining and co-expression networks: targeting NADP(H) metabolism in E. coli with event extraction Proceedings of the 3rd Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM '12) 2012
-
(2012)
Proceedings of the 3rd Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM '12)
-
-
Kaewphan, S.1
Kreula, S.2
Van Landeghem, S.3
Van De Peer, Y.4
Jones, P.5
Ginter, F.6
-
22
-
-
34547700612
-
Meiotic roles of Mec1, a budding yeast homolog of mammalian ATR/ATM
-
DOI 10.1007/s10577-007-1145-y
-
Carballo J. A., Cha R. S., Meiotic roles of Mec1, a budding yeast homolog of mammalian ATR/ATM Chromosome Research 2007 15 5 539 550 (Pubitemid 47221372)
-
(2007)
Chromosome Research
, vol.15
, Issue.5
, pp. 539-550
-
-
Carballo, J.A.1
Cha, R.S.2
-
23
-
-
60749125063
-
Protein function annotation by homology-based inference
-
ARTICLE 207
-
Loewenstein Y., Raimondo D., Redfern O. C., Watson J., Frishman D., Linial M., Orengo C., Thornton J., Tramontano A., Protein function annotation by homology-based inference Genome Biology 2009 10 2, article 207
-
(2009)
Genome Biology
, vol.10
, Issue.2
-
-
Loewenstein, Y.1
Raimondo, D.2
Redfern, O.C.3
Watson, J.4
Frishman, D.5
Linial, M.6
Orengo, C.7
Thornton, J.8
Tramontano, A.9
-
24
-
-
75649134588
-
PLAZA: A comparative genomics resource to study gene and genome evolution in plants
-
Proost S., Van Bel M., Sterck L., Billiau K., van Parys T., van de Peer Y., Vandepoele K., PLAZA: a comparative genomics resource to study gene and genome evolution in plants Plant Cell 2009 21 12 3718 3731
-
(2009)
Plant Cell
, vol.21
, Issue.12
, pp. 3718-3731
-
-
Proost, S.1
Van Bel, M.2
Sterck, L.3
Billiau, K.4
Van Parys, T.5
Van De Peer, Y.6
Vandepoele, K.7
-
25
-
-
0027971222
-
An essential gene, ESR1, is required for mitotic cell growth, DNA repair and meiotic recombination in Saccharomyces cerevisiae
-
Kato R., Ogawa H., An essential gene, ESR1, is required for mitotic cell growth, DNA repair and meiotic recombination in Saccharomyces cerevisiae Nucleic Acids Research 1994 22 15 3104 3112 (Pubitemid 24260642)
-
(1994)
Nucleic Acids Research
, vol.22
, Issue.15
, pp. 3104-3112
-
-
Kato, R.1
Ogawa, H.2
-
26
-
-
84863715052
-
BioNLP Shared Task 2011: Supporting resources
-
Portland, Oregon, USA
-
Stenetorp P., Topi G., Pyysalo S., Ohta T., Kim J.-D., Tsujii J., BioNLP Shared Task 2011: supporting resources Proceedings of the BioNLP Workshop Companion Volume for Shared Task 2011 Portland, Oregon, USA 112 120
-
(2011)
Proceedings of the BioNLP Workshop Companion Volume for Shared Task
, pp. 112-120
-
-
Stenetorp, P.1
Topi, G.2
Pyysalo, S.3
Ohta, T.4
Kim, J.-D.5
Tsujii, J.6
-
29
-
-
84863698489
-
Semantically linking molecular entities in literature through entity relationships
-
article S6
-
Van Landeghem S., Bjrne J., Abeel T., De Baets B., Salakoski T., Van de Peer Y., Semantically linking molecular entities in literature through entity relationships BMC Bioinformatics 2012 13 supplement 8, article S6
-
(2012)
BMC Bioinformatics
, vol.13
, Issue.SUPPL. 8
-
-
Van Landeghem, S.1
Bjrne, J.2
Abeel, T.3
De Baets, B.4
Salakoski, T.5
Van De Peer, Y.6
-
30
-
-
80052774027
-
The gene normalization task in BioCreative III
-
article S2
-
Lu Z., Kao H. Y., Wei C. H., The gene normalization task in BioCreative III BMC Bioinformatics 2011 12 supplement 8, article S2
-
(2011)
BMC Bioinformatics
, vol.12
, Issue.SUPPL. 8
-
-
Lu, Z.1
Kao, H.Y.2
Wei, C.H.3
|