Genetic composition and spatial distribution of Farmer-managed Phaseolus Bean Plantings: An example from a village in Oaxaca, Mexico

Crop Science

Volumn 52, Issue 4, 2012, Pages 1721-1735

  Worthington, Margaret ^a   Soleri, Daniela ^b   Aragón Cuevas, Flavio ^c   Gepts, Paul ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c INSTITUTO NACIONAL DE INVESTIGACIONES FORESTALES   (Mexico)

Author keywords

[No Author keywords available]

Indexed keywords

PHASEOLUS COCCINEUS; PHASEOLUS VULGARIS;

EID: 84863577413     PISSN: 0011183X     EISSN: 14350653     Source Type: Journal    
DOI: 10.2135/cropsci2011.09.0518     Document Type: Article

References (51)

1. Angioi, S.A., F. Desiderio, D. Rau, E. Bitocchi, G. Attene, and R. Papa. 2009. Development and use of chloroplast microsatellites in Phaseolus spp. and other legumes. Plant Biol. 11:598-612. doi:10.1111/j.1438-8677.2008.00143.x
2. Aragón-Cuevas, F., S. Taba, J.M. Hernández Casillas, J. de D. Figueroa C., J. de Dios Serrano, V. Serrano Altamirano, and F.H. Castro Garca. 2006. Catálogo de maíces criollos de Oaxaca. 1st ed. INIFAP-SAGARPA Tech. Publ. 6. INIFAP-SAGARPA, Oaxaca, Oaxaca, México.
3. Becerra Velásquez, V., and P. Gepts. 1994. RFLP diversity in common bean (Phaseolus vulgaris L.). Genome 37:256-263. doi:10.1139/g94-036
4. Beebe, S., P.W. Skroch, J. Tohme, M.C. Duque, F. Pedraza, and J. Nienhuis. 2000. Structure of genetic diversity among common bean landraces of Middle American origin based on correspondence analysis of RAPD. Crop Sci. 40:264-273. doi:10.2135/cropsci2000.401264x
5. Beebe, S., O. Toro, A.V. Gonzalez, M.I. Chacon, and D.G. Debouck. 1997. Wild-weed-crop complexes of common bean (Phaseolus vulgaris L., Fabaceae) in the Andes of Peru and Colombia, and their implications for conservation and breeding. Genet. Resour. Crop Evol. 44:73-91. doi:10.1023/A:1008621632680.
6. Bellon, M.R. 2006. Crop research to benefit poor farmers in marginal areas of the developing world: A review of technical challenges and tools. CAB Rev. 1(070):1-11.
7. Berglund-Brücher, O., and H. Brücher. 1976. The South American wild bean (Phaseolus aborigineus Burk.) as ancestor of the common bean. Econ. Bot. 30:257-272. doi:10.1007/ BF02909734
8. Blair, M.W., F. Pedraza, H.F. Buendia, E. Gaitan-Solis, S.E. Beebe, P. Gepts, and J. Tohme. 2003. Development of a genome-wide anchored microsatellite map for common bean (Phaseolus vulgaris L.). Theor. Appl. Genet. 107:1362-1374. doi:10.1007/s00122-003-1398-6
9. Broughton, W.J., G. Hernandez, M. Blair, S. Beebe, P. Gepts, and J. Vanderleyden. 2003. Beans (Phaseolus spp.)-Model food legumes. Plant Soil 252:55-128.
10. Brush, S.B. 1995. In-situ conservation of landraces in centers of crop diversity. Crop Sci. 35:346-354. doi:10.2135/cropsci1995.0011183X003500020009x
11. Burkart, A., and H. Brücher. 1953. Phaseolus aborigineus Burkart, die mutmassliche andine Stammform der Kulturbohne. Züchter 23:65-72.
12. Búrquez, A., and J. Sarukhan. 1980. Biología floral de poblaciones silvestres de Phaseolus coccineus L. I. Relaciones plantapolinizador. Bol. Soc. Bot. Mex. 39:5-25.
13. Cavalli-Sforza, L.L., and A.W.F. Edwards. 1967. Phylogenetic analysis: Models and estimation procedures. Am. J. Hum. Genet. 19:233-257.
14. CONAPO. 2005. Índice de marginación a nivel localidad 2005. Consejo Nacional de Población (CONAPO), México, D.F. www.conapo.gob.mx/publicaciones/IndiceMargLoc2005.pdf (accessed 1 Jan. 2012).
15. CONAPO. 2010. Índice de marginacíon por entidad federativa y municipio, 2010. Consejo Nacional de Población (CONAPO), México, D.F. http://conapo.mx/index.php?option=com_content&view=article&id=47 8:indices-de-marginacion-2011&catid=27:mexico-en-cifras (accessed 1 Jan. 2012).
16. Debouck, D.G., and P. Gepts. 1991. Systematics and morphology. In: O. Voyest and A. Van Schoonhoven, editors, Common beans: Research for crop improvement. CAB, Oxon, UK. p. 55-118.
17. Debouck, D.G., O. Toro, O.M. Paredes, W.C. Johnson, and P. Gepts. 1993. Genetic diversity and ecological distribution of Phaseolus vulgaris in northwestern South America. Econ. Bot. 47:408-423. doi:10.1007/BF02907356
18. Delgado Salinas, A. 1988. Variation, taxonomy, domestication, and germplasm potentialities in Phaseolus coccineus. In: P. Gepts, editor, Genetic resources of Phaseolus beans. Kluwer, Dordrecht, the Netherlands. p. 441-463.
19. Diaz, L.M., and M.W. Blair. 2006. Race structure within the Mesoamerican gene pool of common bean (Phaseolus vulgaris L.) as determined by microsatellite markers. Theor. Appl. Genet. 114:143-154. doi:10.1007/s00122-006-0417-9
20. Doyle, J., and J. Doyle. 1987. A rapid DNA isolation procedure from small quantities of fresh leaf tissue. Phytochem. Bull. 19:11-15.
21. Escalante, A.M., G. Coello, L.E. Eguiarte, and D. Pinero. 1994. Genetic-structure and mating systems in wild and cultivated populations of Phaseolus coccineus and Phaseolus vulgaris (Fabaceae). Am. J. Bot. 81:1096-1103. doi:10.2307/2445471
22. Evanno, G., S. Regnaut, and J. Goudet. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study. Mol. Ecol. 14:2611-2620. doi:10.1111/ j.1365-294X.2005.02553.x
23. Freyre, R., R. Rios, L. Guzman, D.G. Debouck, and P. Gepts. 1996. Ecogeographic distribution of Phaseolus spp. (Fabaceae) in Bolivia. Econ. Bot. 50:195-215. doi:10.1007/BF02861451.
24. Gaitan-Solis, E., M.C. Duque, K.J. Edwards, and J. Tohme. 2002. Microsatellite repeats in common bean (Phaseolus vulgaris): Isolation, characterization, and cross-species amplification in Phaseolus ssp. Crop Sci. 42:2128-2136. doi:10.2135/cropsci2002.2128
25. Gepts, P., and D. Debouck. 1991. Origin, domestication, and evolution of the common bean, Phaseolus vulgaris. In: O. Voyest and A. Van Schoonhoven, editors, Common beans: Research for crop improvement. CAB, Oxon, UK. p. 7-53.
26. Gepts, P., T.C. Osborn, K. Rashka, and F.A. Bliss. 1986. Phaseolin-protein variability in wild forms and landraces of the common bean (Phaseolus vulgaris): Evidence for multiple centers of domestication. Econ. Bot. 40:451-468. doi:10.1007/ BF02859659
27. González, R.J. 2001. Zapotec science: Farming and food in the Northern Sierra of Oaxaca. Univ. of Texas Press, Austin.
28. Holsinger, K.E., and B.S. Weir. 2009. Genetics in geographically structured populations: Defining, estimating and interpreting FST. Nat. Rev. Genet. 10:639-650.
29. Ibarra-Perez, F.J., B. Ehdaie, and J.G. Waines. 1997. Estimation of outcrossing rate in common bean. Crop Sci. 37:60-65. doi:10.2135/cropsci1997.0011183X003700010009x INEGI. 2005.
30. Conteo de población y vivienda 2005. Instituto Nacional de Estadística y Geografía. http://www.inegi.org.mx/est/contenidos/proyectos/ccpv/cpv2005/presentaci on.aspx?p=1 (accessed 3 June 2009).
31. Kaplan, L., and T.F. Lynch. 1999. Phaseolus (Fabaceae) in archaeology: AMS radiocarbon dates and their significance for pre-Colombian agriculture. Econ. Bot. 53:261-272. doi:10.1007/BF02866636
32. Keleman, A., J. Hellin, and M.R. Bellon. 2009. Maize diversity, rural development policy, and farmers practices: Lessons from Chiapas, Mexico. Geogr. J. 175:52-70. doi:10.1111/j.1475-4959.2008.00314.x
33. Koenig, R., and P. Gepts. 1989. Segregation and linkage of genes for seed proteins, isozymes, and morphological traits in common bean (Phaseolus vulgaris). J. Hered. 80:455-459.
34. Kwak, M., J.A. Kami, and P. Gepts. 2009. The putative Mesoamerican domestication center of Phaseolus vulgaris is located in the Lerma-Santiago Basin of Mexico. Crop Sci. 49:554-563. doi:10.2135/cropsci2008.07.0421
35. Liu, K.J., and S.V. Muse. 2005. PowerMarker: An integrated analysis environment for genetic marker analysis. Bioinformatics 21:2128-2129. doi:10.1093/bioinformatics/bti282.
36. Llaca, V., A.D. Salinas, and P. Gepts. 1994. Chloroplast DNA as an evolutionary marker in the Phaseolus vulgaris complex. Theor. Appl. Genet. 88:646-652. doi:10.1007/BF01253966
37. McBryde, F.W. 1947. Cultural and historical geography of southwest Guatemala. Smithsonian Institution Inst. of Soc. Anthropol. Publ. 4. U.S. Govt. Print. Off., Washington, DC.
38. Mendel, G. 1866. Experiments on plant hybrids. In: C. Stern and E.R. Sherwood, editors, The origin of genetics. W.H. Freeman, San Francisco. p. 1-48.
39. Peakall, R., and P.E. Smouse. 2006. GENALEX 6: Genetic analysis in Excel. Population genetic software for teaching and research. Mol. Ecol. Notes 6:288-295. doi:10.1111/j.1471-8286.2005.01155.x
40. Perales, H., S.B. Brush, and C.O. Qualset. 2003. Dynamic management of maize landraces in Central Mexico. Econ. Bot. 57:21-34. doi:10.1663/0013-0001(2003)057[0021:DMO MLI]2.0.CO;2
41. Pickersgill, B. 2007. Domestication of plants in the Americas: Insights from Mendelian and molecular genetics. Ann. Bot. (Lond.) 100:925-940. doi:10.1093/aob/mcm193
42. Pritchard, J.K., M. Stephens, and P. Donnelly. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959.
43. Schuelke, M. 2000. An economic method for the fluorescent labeling of PCR fragments. Nat. Biotechnol. 18:233-234. doi:10.1038/72708
44. Singh, S.P., P. Gepts, and D.G. Debouck. 1991. Races of common bean (Phaseolus vulgaris, Fabaceae). Econ. Bot. 45:379-396. doi:10.1007/BF02887079
45. Soleri, D., and D.A. Cleveland. 1993. Hopi crop diversity and change. J. Ethnobiol. 13:203-231.
46. Takezaki, N., and M, Nei. 1996. Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics 144:389-399.
47. Tohme, J., D.O. Gonzalez, S. Beebe, and M.C. Duque. 1996. AFLP analysis of gene pools of a wild bean core collection. Crop Sci. 36:1375-1384. doi:10.2135/cropsci1996.0011183X 003600050048x
48. Weising, K., and R.C. Gardner. 1999. A set of conserved PCR primers for the analysis of simple sequence repeat polymorphisms in chloroplast genomes of dicotyledonous angiosperms. Genome 42:9-19. doi:10.1139/g98-104
49. Xu, D.H., J. Abe, J.Y. Gai, and Y. Shimamoto. 2002. Diversity of chloroplast DNA SSRs in wild and cultivated soybeans: Evidence for multiple origins of cultivated soybean. Theor. Appl. Genet. 105:645-653. doi:10.1007/s00122-002-0972-7.
50. Yu, K., S.J. Park, V. Poysa, and P. Gepts. 2000. Integration of simple sequence repeat (SSR) markers into a molecular linkage map of common bean (Phaseolus vulgaris L.). J. Hered. 91:429-434. doi:10.1093/jhered/91.6.429
51. Zizumbo-Villarreal, D., P. Colunga-GarciaMarin, E. Payro de la Cruz, P. Delgado-Valerio, and P. Gepts. 2005. Population structure and evolutionary dynamics of wild-weedy-domesticated complexes of common bean in a Mesoamerican region. Crop Sci. 45:1073-1083. doi:10.2135/ cropsci2004.0340