-
1
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
P.D. Adams, P.V. Afonine, G. Bunkóczi, V.B. Chen, I.W. Davis, N. Echols, J.J. Headd, L.W. Hung, G.J. Kapral, and R.W. Grosse-Kunstleve PHENIX: a comprehensive Python-based system for macromolecular structure solution Acta Crystallogr. D Biol. Crystallogr. 66 2010 213 221
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkóczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
-
2
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project, Number 4
-
S. Bailey Collaborative Computational Project, Number 4 The CCP4 suite: programs for protein crystallography Acta Crystallogr. D Biol. Crystallogr. 50 1994 760 763
-
(1994)
Acta Crystallogr. D Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
Bailey, S.1
-
3
-
-
0031754775
-
Shewanella putrefaciens mtrB encodes an outer membrane protein required for Fe(III) and Mn(IV) reduction
-
A.S. Beliaev, and D.A. Saffarini Shewanella putrefaciens mtrB encodes an outer membrane protein required for Fe(III) and Mn(IV) reduction J. Bacteriol. 180 1998 6292 6297 (Pubitemid 28544261)
-
(1998)
Journal of Bacteriology
, vol.180
, Issue.23
, pp. 6292-6297
-
-
Beliaev, A.S.1
Saffarini, D.A.2
-
4
-
-
79959370190
-
Structure of a bacterial cell surface decaheme electron conduit
-
T.A. Clarke, M.J. Edwards, A.J. Gates, A. Hall, G.F. White, J. Bradley, C.L. Reardon, L. Shi, A.S. Beliaev, and M.J. Marshall Structure of a bacterial cell surface decaheme electron conduit Proc. Natl. Acad. Sci. USA 108 2011 9384 9389
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 9384-9389
-
-
Clarke, T.A.1
Edwards, M.J.2
Gates, A.J.3
Hall, A.4
White, G.F.5
Bradley, J.6
Reardon, C.L.7
Shi, L.8
Beliaev, A.S.9
Marshall, M.J.10
-
5
-
-
77955382673
-
Modularity of the Mtr respiratory pathway of Shewanella oneidensis strain MR-1
-
D. Coursolle, and J.A. Gralnick Modularity of the Mtr respiratory pathway of Shewanella oneidensis strain MR-1 Mol. Microbiol. 77 2010 995 1008
-
(2010)
Mol. Microbiol.
, vol.77
, pp. 995-1008
-
-
Coursolle, D.1
Gralnick, J.A.2
-
6
-
-
73649141295
-
The Mtr respiratory pathway is essential for reducing flavins and electrodes in Shewanella oneidensis
-
D. Coursolle, D.B. Baron, D.R. Bond, and J.A. Gralnick The Mtr respiratory pathway is essential for reducing flavins and electrodes in Shewanella oneidensis J. Bacteriol. 192 2010 467 474
-
(2010)
J. Bacteriol.
, vol.192
, pp. 467-474
-
-
Coursolle, D.1
Baron, D.B.2
Bond, D.R.3
Gralnick, J.A.4
-
7
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
R.C. Edgar MUSCLE: a multiple sequence alignment method with reduced time and space complexity BMC Bioinformatics 5 2004 113
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
9
-
-
47549087897
-
Towards environmental systems biology of Shewanella
-
J.K. Fredrickson, M.F. Romine, A.S. Beliaev, J.M. Auchtung, M.E. Driscoll, T.S. Gardner, K.H. Nealson, A.L. Osterman, G. Pinchuk, and J.L. Reed Towards environmental systems biology of Shewanella Nat. Rev. Microbiol. 6 2008 592 603
-
(2008)
Nat. Rev. Microbiol.
, vol.6
, pp. 592-603
-
-
Fredrickson, J.K.1
Romine, M.F.2
Beliaev, A.S.3
Auchtung, J.M.4
Driscoll, M.E.5
Gardner, T.S.6
Nealson, K.H.7
Osterman, A.L.8
Pinchuk, G.9
Reed, J.L.10
-
10
-
-
34548393635
-
Characterization of Shewanella oneidensis MtrC: A cell-surface decaheme cytochrome involved in respiratory electron transport to extracellular electron acceptors
-
DOI 10.1007/s00775-007-0278-y
-
R.S. Hartshorne, B.N. Jepson, T.A. Clarke, S.J. Field, J. Fredrickson, J. Zachara, L. Shi, J.N. Butt, and D.J. Richardson Characterization of Shewanella oneidensis MtrC: a cell-surface decaheme cytochrome involved in respiratory electron transport to extracellular electron acceptors J. Biol. Inorg. Chem. 12 2007 1083 1094 (Pubitemid 47353552)
-
(2007)
Journal of Biological Inorganic Chemistry
, vol.12
, Issue.7
, pp. 1083-1094
-
-
Hartshorne, R.S.1
Jepson, B.N.2
Clarke, T.A.3
Field, S.J.4
Fredrickson, J.5
Zachara, J.6
Shi, L.7
Butt, J.N.8
Richardson, D.J.9
-
11
-
-
73349134931
-
Characterization of an electron conduit between bacteria and the extracellular environment
-
R.S. Hartshorne, C.L. Reardon, D. Ross, J. Nuester, T.A. Clarke, A.J. Gates, P.C. Mills, J.K. Fredrickson, J.M. Zachara, and L. Shi Characterization of an electron conduit between bacteria and the extracellular environment Proc. Natl. Acad. Sci. USA 106 2009 22169 22174
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 22169-22174
-
-
Hartshorne, R.S.1
Reardon, C.L.2
Ross, D.3
Nuester, J.4
Clarke, T.A.5
Gates, A.J.6
Mills, P.C.7
Fredrickson, J.K.8
Zachara, J.M.9
Shi, L.10
-
12
-
-
37049080537
-
Crystal and molecular-structure of a new mu-oxo-bridged iron(iii) dimer formed with the nitrilotriacetate ligand
-
S.L. Heath, A.K. Powell, H.L. Utting, and M. Helliwell Crystal and molecular-structure of a new mu-oxo-bridged iron(iii) dimer formed with the nitrilotriacetate ligand J. Chem. Soc. Dalton Trans. 1992 305 307
-
(1992)
J. Chem. Soc. Dalton Trans.
, pp. 305-307
-
-
Heath, S.L.1
Powell, A.K.2
Utting, H.L.3
Helliwell, M.4
-
13
-
-
77953562742
-
Characterization of the decaheme c-type cytochrome OmcA in solution and on hematite surfaces by small angle x-ray scattering and neutron reflectometry
-
A. Johs, L. Shi, T. Droubay, J.F. Ankner, and L. Liang Characterization of the decaheme c-type cytochrome OmcA in solution and on hematite surfaces by small angle x-ray scattering and neutron reflectometry Biophys. J. 98 2010 3035 3043
-
(2010)
Biophys. J.
, vol.98
, pp. 3035-3043
-
-
Johs, A.1
Shi, L.2
Droubay, T.3
Ankner, J.F.4
Liang, L.5
-
15
-
-
34347370683
-
Specific bonds between an iron oxide surface and outer membrane cytochromes MtrC and OmcA from Shewanella oneidensis MR-1
-
DOI 10.1128/JB.01518-06
-
B.H. Lower, L. Shi, R. Yongsunthon, T.C. Droubay, D.E. McCready, and S.K. Lower Specific bonds between an iron oxide surface and outer membrane cytochromes MtrC and OmcA from Shewanella oneidensis MR-1 J. Bacteriol. 189 2007 4944 4952 (Pubitemid 47025606)
-
(2007)
Journal of Bacteriology
, vol.189
, Issue.13
, pp. 4944-4952
-
-
Lower, B.H.1
Shi, L.2
Yongsunthon, R.3
Droubay, T.C.4
McCready, D.E.5
Lower, S.K.6
-
16
-
-
65549089956
-
Antibody recognition force microscopy shows that outer membrane cytochromes OmcA and MtrC are expressed on the exterior surface of Shewanella oneidensis MR-1
-
B.H. Lower, R. Yongsunthon, L. Shi, L. Wildling, H.J. Gruber, N.S. Wigginton, C.L. Reardon, G.E. Pinchuk, T.C. Droubay, J.F. Boily, and S.K. Lower Antibody recognition force microscopy shows that outer membrane cytochromes OmcA and MtrC are expressed on the exterior surface of Shewanella oneidensis MR-1 Appl. Environ. Microbiol. 75 2009 2931 2935
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 2931-2935
-
-
Lower, B.H.1
Yongsunthon, R.2
Shi, L.3
Wildling, L.4
Gruber, H.J.5
Wigginton, N.S.6
Reardon, C.L.7
Pinchuk, G.E.8
Droubay, T.C.9
Boily, J.F.10
Lower, S.K.11
-
17
-
-
34447508216
-
Phaser crystallographic software
-
DOI 10.1107/S0021889807021206, PII S0021889807021206
-
A.J. McCoy, R.W. Grosse-Kunstleve, P.D. Adams, M.D. Winn, L.C. Storoni, and R.J. Read Phaser crystallographic software J. Appl. Cryst. 40 2007 658 674 (Pubitemid 47080256)
-
(2007)
Journal of Applied Crystallography
, vol.40
, Issue.4
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
18
-
-
44849088032
-
Oxygen-dependent autoaggregation in Shewanella oneidensis MR-1
-
DOI 10.1111/j.1462-2920.2008.01608.x
-
J.S. McLean, G.E. Pinchuk, O.V. Geydebrekht, C.L. Bilskis, B.A. Zakrajsek, E.A. Hill, D.A. Saffarini, M.F. Romine, Y.A. Gorby, J.K. Fredrickson, and A.S. Beliaev Oxygen-dependent autoaggregation in Shewanella oneidensis MR-1 Environ. Microbiol. 10 2008 1861 1876 (Pubitemid 351793626)
-
(2008)
Environmental Microbiology
, vol.10
, Issue.7
, pp. 1861-1876
-
-
McLean, J.S.1
Pinchuk, G.E.2
Geydebrekht, O.V.3
Bilskis, C.L.4
Zakrajsek, B.A.5
Hill, E.A.6
Saffarini, D.A.7
Romine, M.F.8
Gorby, Y.A.9
Fredrickson, J.K.10
Beliaev, A.S.11
-
19
-
-
2142750049
-
Breaking good resolutions with ARP/wARP
-
DOI 10.1107/S090904950302394X
-
R.J. Morris, P.H. Zwart, S. Cohen, F.J. Fernandez, M. Kakaris, O. Kirillova, C. Vonrhein, A. Perrakis, and V.S. Lamzin Breaking good resolutions with ARP/wARP J. Synchrotron Radiat. 11 2004 56 59 (Pubitemid 40085634)
-
(2004)
Journal of Synchrotron Radiation
, vol.11
, Issue.1
, pp. 56-59
-
-
Morris, R.J.1
Zwart, P.H.2
Cohen, S.3
Fernandez, F.J.4
Kakaris, M.5
Kirillova, O.6
Vonrhein, C.7
Perrakis, A.8
Lamzin, V.S.9
-
20
-
-
79953763877
-
REFMAC5 for the refinement of macromolecular crystal structures
-
G.N. Murshudov, P. Skubák, A.A. Lebedev, N.S. Pannu, R.A. Steiner, R.A. Nicholls, M.D. Winn, F. Long, and A.A. Vagin REFMAC5 for the refinement of macromolecular crystal structures Acta Crystallogr. D Biol. Crystallogr. 67 2011 355 367
-
(2011)
Acta Crystallogr. D Biol. Crystallogr.
, vol.67
, pp. 355-367
-
-
Murshudov, G.N.1
Skubák, P.2
Lebedev, A.A.3
Pannu, N.S.4
Steiner, R.A.5
Nicholls, R.A.6
Winn, M.D.7
Long, F.8
Vagin, A.A.9
-
21
-
-
0041344634
-
Characterization of the Shewanella oneidensis MR-1 decaheme cytochrome MtrA: Expression in Escherichia coli confers the ability to reduce soluble FE(III) chelates
-
DOI 10.1074/jbc.M302582200
-
K.E. Pitts, P.S. Dobbin, F. Reyes-Ramirez, A.J. Thomson, D.J. Richardson, and H.E. Seward Characterization of the Shewanella oneidensis MR-1 decaheme cytochrome MtrA: expression in Escherichia coli confers the ability to reduce soluble Fe(III) chelates J. Biol. Chem. 278 2003 27758 27765 (Pubitemid 36899966)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.30
, pp. 27758-27765
-
-
Pitts, K.E.1
Dobbin, P.S.2
Reyes-Ramirez, F.3
Thomson, A.J.4
Richardson, D.J.5
Seward, H.E.6
-
22
-
-
34648827433
-
Characterization of protein-protein interactions involved in iron reduction by Shewanella oneidensis MR-1
-
DOI 10.1128/AEM.00146-07
-
D.E. Ross, S.S. Ruebush, S.L. Brantley, R.S. Hartshorne, T.A. Clarke, D.J. Richardson, and M. Tien Characterization of protein-protein interactions involved in iron reduction by Shewanella oneidensis MR-1 Appl. Environ. Microbiol. 73 2007 5797 5808 (Pubitemid 47462991)
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.18
, pp. 5797-5808
-
-
Ross, D.E.1
Ruebush, S.S.2
Brantley, S.L.3
Hartshorne, R.S.4
Clarke, T.A.5
Richardson, D.J.6
Tien, M.7
-
23
-
-
68549125315
-
Kinetic characterization of OmcA and MtrC, terminal reductases involved in respiratory electron transfer for dissimilatory iron reduction in Shewanella oneidensis MR-1
-
D.E. Ross, S.L. Brantley, and M. Tien Kinetic characterization of OmcA and MtrC, terminal reductases involved in respiratory electron transfer for dissimilatory iron reduction in Shewanella oneidensis MR-1 Appl. Environ. Microbiol. 75 2009 5218 5226
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 5218-5226
-
-
Ross, D.E.1
Brantley, S.L.2
Tien, M.3
-
24
-
-
77953360389
-
A systematic investigation of multiheme c-type cytochromes in prokaryotes
-
S. Sharma, G. Cavallaro, and A. Rosato A systematic investigation of multiheme c-type cytochromes in prokaryotes J. Biol. Inorg. Chem. 15 2010 559 571
-
(2010)
J. Biol. Inorg. Chem.
, vol.15
, pp. 559-571
-
-
Sharma, S.1
Cavallaro, G.2
Rosato, A.3
-
25
-
-
37549039510
-
A short history of SHELX
-
G.M. Sheldrick A short history of SHELX Acta Crystallogr. A 64 2008 112 122
-
(2008)
Acta Crystallogr. A
, vol.64
, pp. 112-122
-
-
Sheldrick, G.M.1
-
26
-
-
33745449038
-
Isolation of a high-affinity functional protein complex between OmcA and MtrC: Two outer membrane decaheme c-type cytochromes of Shewanella oneidensis MR-1
-
DOI 10.1128/JB.01966-05
-
L. Shi, B. Chen, Z. Wang, D.A. Elias, M.U. Mayer, Y.A. Gorby, S. Ni, B.H. Lower, D.W. Kennedy, and D.S. Wunschel Isolation of a high-affinity functional protein complex between OmcA and MtrC: Two outer membrane decaheme c-type cytochromes of Shewanella oneidensis MR-1 J. Bacteriol. 188 2006 4705 4714 (Pubitemid 43956069)
-
(2006)
Journal of Bacteriology
, vol.188
, Issue.13
, pp. 4705-4714
-
-
Shi, L.1
Chen, B.2
Wang, Z.3
Elias, D.A.4
Mayer, M.U.5
Gorby, Y.A.6
Ni, S.7
Lower, B.H.8
Kennedy, D.W.9
Wunschel, D.S.10
Mottaz, H.M.11
Marshall, M.J.12
Hill, E.A.13
Beliaev, A.S.14
Zachara, J.M.15
Fredrickson, J.K.16
Squier, T.C.17
-
27
-
-
79961093488
-
Identification and characterization of UndAHRCR-6, an outer membrane endecaheme c-type cytochrome of Shewanella sp. strain HRCR-6
-
L. Shi, S.M. Belchik, Z.M. Wang, D.W. Kennedy, A.C. Dohnalkova, M.J. Marshall, J.M. Zachara, and J.K. Fredrickson Identification and characterization of UndAHRCR-6, an outer membrane endecaheme c-type cytochrome of Shewanella sp. strain HRCR-6 Appl. Environ. Microbiol. 77 2011 5521 5523
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 5521-5523
-
-
Shi, L.1
Belchik, S.M.2
Wang, Z.M.3
Kennedy, D.W.4
Dohnalkova, A.C.5
Marshall, M.J.6
Zachara, J.M.7
Fredrickson, J.K.8
-
28
-
-
84863520275
-
Molecular underpinnings of Fe(III) oxide reduction by Shewanella Oneidensis MR-1
-
L. Shi, K.M. Rosso, T.A. Clarke, D.J. Richardson, J. Zachara, and J. Fredrickson Molecular underpinnings of Fe(III) oxide reduction by Shewanella Oneidensis MR-1 Front. Microbiol. 3 2012 50
-
(2012)
Front. Microbiol.
, vol.3
, pp. 50
-
-
Shi, L.1
Rosso, K.M.2
Clarke, T.A.3
Richardson, D.J.4
Zachara, J.5
Fredrickson, J.6
-
29
-
-
74249122813
-
Iron(III) citrate speciation in aqueous solution
-
A.M.N. Silva, X. Kong, M.C. Parkin, R. Cammack, and R.C. Hider Iron(III) citrate speciation in aqueous solution Dalton Trans. 40 2009 8616 8625
-
(2009)
Dalton Trans.
, Issue.40
, pp. 8616-8625
-
-
Silva, A.M.N.1
Kong, X.2
Parkin, M.C.3
Cammack, R.4
Hider, R.C.5
-
30
-
-
33750430639
-
High-affinity binding and direct electron transfer to solid metals by the Shewanella oneidensis MR-1 Outer membrane c-type cytochrome OmcA
-
DOI 10.1021/ja063526d
-
Y.J. Xiong, L. Shi, B.W. Chen, M.U. Mayer, B.H. Lower, Y. Londer, S. Bose, M.F. Hochella, J.K. Fredrickson, and T.C. Squier High-affinity binding and direct electron transfer to solid metals by the Shewanella oneidensis MR-1 outer membrane c-type cytochrome OmcA J. Am. Chem. Soc. 128 2006 13978 13979 (Pubitemid 44657461)
-
(2006)
Journal of the American Chemical Society
, vol.128
, Issue.43
, pp. 13978-13979
-
-
Xiong, Y.1
Shi, L.2
Chen, B.3
Mayer, M.U.4
Lower, B.H.5
Londer, Y.6
Bose, S.7
Hochella, M.F.8
Fredrickson, J.K.9
Squier, T.C.10
-
31
-
-
55149120128
-
Kinetics of reduction of Fe(III) complexes by outer membrane cytochromes MtrC and OmcA of Shewanella oneidensis MR-1
-
Z.M. Wang, C.X. Liu, X.L. Wang, M.J. Marshall, J.M. Zachara, K.M. Rosso, M. Dupuis, J.K. Fredrickson, S. Heald, and L. Shi Kinetics of reduction of Fe(III) complexes by outer membrane cytochromes MtrC and OmcA of Shewanella oneidensis MR-1 Appl. Environ. Microbiol. 74 2008 6746 6755
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 6746-6755
-
-
Wang, Z.M.1
Liu, C.X.2
Wang, X.L.3
Marshall, M.J.4
Zachara, J.M.5
Rosso, K.M.6
Dupuis, M.7
Fredrickson, J.K.8
Heald, S.9
Shi, L.10
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