Relaxed genetic constraint is ancestral to the evolution of phenotypic plasticity

Integrative and Comparative Biology

Volumn 52, Issue 1, 2012, Pages 16-30

  Leichty, Aaron R ^a,b   Pfennig, David W ^a   Jones, Corbin D ^a   Pfennig, Karin S ^a  

^a UNIVERSITY OF NORTH CAROLINA   (United States)

^b UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; ANURA; CONFERENCE PAPER; DNA MICROARRAY; ENVIRONMENT; FEEDING BEHAVIOR; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC SELECTION; GENETIC VARIABILITY; GENETICS; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NONPARAMETRIC TEST; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PHYSIOLOGY;

ANIMALS; ANURA; BASE SEQUENCE; ENVIRONMENT; EVOLUTION, MOLECULAR; FEEDING BEHAVIOR; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC VARIATION; MOLECULAR SEQUENCE DATA; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHENOTYPE; PHYLOGENY; SELECTION, GENETIC; STATISTICS, NONPARAMETRIC;

ANURA;

EID: 84863492244     PISSN: 15407063     EISSN: 15577023     Source Type: Journal    
DOI: 10.1093/icb/ics049     Document Type: Conference Paper

References (35)

1. Aubin-Horth N, Renn SCP. 2009. Genomic reaction norms: Using integrative biology to understand molecular mechanisms of phenotypic plasticity. Mol Ecol 18:3763-80.
2. Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: A practical and powerful approach to multiple testing. J Roy Stat Soc Ser B Meth 57:289-300.
3. Connallon T, Clark AG. 2011. Association between sex-biased gene expression and mutations with sex-specific phenotypic consequences in Drosophila. Genome Biol Evolut 3:151-5.
4. Fisher RA. 1930 (1999). The genetical theory of natural selection. A complete variorum edition. New York: Oxford University Press.
5. Fraser HB, Hirsh AE, Giaever G, Kumm J, Eisen MB. 2004. Noise minimization in eukaryotic gene expression. Public Libr Sci Biol 2:e137.
6. Hirsh AE, Fraser HB. 2008. Protein dispensability and rate of evolution. Nature 411:1046-9.
7. Hunt BG, Ometto L, Wurmb Y, Shoemaker D, Yi SV, Keller L, Goodisman MAD. 2011. Relaxed selection is a precursor to the evolution of phenotypic plasticity. Proc Natl Acad Sci USA 108:15936-41.
8. Hunt BG, Wyder S, Elango N, Werren JH, Zdobnov EM, Yi SV, Goodisman MAD. 2010. Sociality is linked to rates of protein evolution in a highly social insect. Mol Biol Evol 27:497-500.
9. Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP. 2003. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4:249-64.
10. Katoh K, Misawa K, Kuma K, Miyata T. 2002. MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30:3059-66.
11. Kawecki TJ. 1994. Accumulation of deleterious mutations and the evolutionary cost of being a generalist. Am Nat 144:833-8.
12. Kawecki TJ, Barton NH, Fry JD. 1997. Mutational collapse of fitness in marginal habitats and the evolution of ecological specialisation. J Evol Biol 10:407-29.
13. Lahti DC, Johnson NA, Ajie BC, Otto SP, Hendry AP, Blumstein DT, Coss RG, Donohue K, Foster SA. 2009. Relaxed selection in the wild. Trends Ecol Evol 24:487-96.
14. Ledón-Rettig CC, Pfennig DW. 2011. Emerging model systems in eco-evo-devo: The environmentally responsive spadefoot toad. Evol Dev 13:391-400.
15. Ledón-Rettig CC, Pfennig DW, Nascone-Yoder N. 2008. Ancestral variation and the potential for genetic accommodation in larval amphibians: Implications for the evolution of novel feeding strategies. Evol Dev 10:316-25.
16. Leichty AR. 2011. The evolution of morph-biased genes in spadefoot toads [Master's thesis]. [Chapel Hill (NC)]: University of North Carolina.
17. Livak KJ, Schmittgen TD. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2(T)(-Delta Delta C) method. Methods 25:402-8.
18. Mank JE, Ellegran H. 2009. Are sex-biased genes more dispensable? Biol Lett 5:409-12.
19. Moczek AP, Sultan SE, Foster S, Ledon-Rettig C, Dworkin I, Nijhout HF, Abouheif E, Pfennig DW. 2011. The role of developmental plasticity in evolutionary innovation. Proc Roy Soc Ser B 278:2705-13.
20. Pal C, Papp B, Lercher MJ. 2006. An intergrated view of protein evolution. Nat Rev Genet 7:337-48.
21. Pfennig DW. 1990. The adaptive significance of an environmentally-cued developmental switch in an anuran tadpole. Oecologia 85:101-7.
22. Pfennig DW, Wund MA, Snell-Rood EC, Cruickshank T, Schlichting CD, Moczek AP. 2010. Phenotypic plasticity's impacts on diversification and speciation. Trends Ecol Evol 25:459-67.
23. R Development Core Team. 2010. R. Vienna, Austria: R Foundation for Statistical Computing.
24. Schlichting CD. 2004. The role of phenotypic plasticity in diversification. In: DeWitt TJ, Scheiner SM, editors. Phenotypic plasticity: Functional and conceptual approaches. Oxford, UK: Oxford University Press. p. 191-200.
25. Snell-Rood EC, Cash A, Han MV, Kijimoto T, Andrews A, Moczek AP. 2011. Developmental decoupling of alternative phenotypes: Insights from the transcriptomes of horn-polyphenic beetles. Evolution 65:231-45.
26. Snell-Rood EC, Van Dyken JD, Cruickshank T, Wade MJ, Moczek AP. 2010. Toward a population genetic framework of developmental evolution: The costs, limits, and consequences of phenotypic plasticity. Bioessays 32:71-81.
27. Storey JD, Tibshirani R. 2003. Statistical significance for genomewide studies. Proc Natl Acad Sci USA 100:9440-5.
28. Suyama M, Torrents D, Bork P. 2006. PAL2NAL: Robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res 34:W609-12.
29. Van Dyken JD, Wade MJ. 2010. The genetic signature of conditional expression. Genetics 184:557-70.
30. West-Eberhard MJ. 1989. Phenotypic plasticity and the origins of diversity. Ann Rev Ecol Sys 20:249-78.
31. West-Eberhard MJ. 2003. Developmental plasticity and evolution. New York: Oxford University Press.
32. Wu H, Kerr M, Cui X, Churchill G. 2003. MAANOVA: A software package for the analysis of spotted cDNAmicroarray experiments. In: Parmigiani G, Garrett E, Irizarry R, Zeger S, editors. The analysis of gene expression data. New York: Springer. p. 313-41.
33. Yang Z. 1998. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol Biol Evol 15:568-73.
34. Yang Z. 2007. PAML 4: A program package for phylogenetic analysis by maximum likelihood. Mol Biol Evol 24:1586-91.
35. Yang Z, Swanson WJ. 2002. Codon-substitution models to detect adaptive evolution that account for heterogeneous selective pressures among site classes. Mol Biol Evol 19:49-57.