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Volumn 15, Issue 8, 2012, Pages 794-802

The evolution of salinity tolerance in Daphnia: A functional genomics approach

Author keywords

Daphnia; Generalist; Microarray; Salinity; Tolerance curve

Indexed keywords

CRUSTACEAN; FITNESS; FUNCTIONAL RESPONSE; GENE EXPRESSION; GENERALIST; GENOMICS; PHENOTYPIC PLASTICITY; PREDATION; SALINITY TOLERANCE; TRADE-OFF;

EID: 84863491035     PISSN: 1461023X     EISSN: 14610248     Source Type: Journal    
DOI: 10.1111/j.1461-0248.2012.01799.x     Document Type: Article
Times cited : (91)

References (50)
  • 1
    • 84987317281 scopus 로고
    • Variation in salinity tolerance in sunflower (Helianthus annus L.)
    • Ashraf, M. & Tufail, M. (1995). Variation in salinity tolerance in sunflower (Helianthus annus L.). J. Agron. Crop Sci., 174, 351-362.
    • (1995) J. Agron. Crop Sci. , vol.174 , pp. 351-362
    • Ashraf, M.1    Tufail, M.2
  • 2
    • 59049088893 scopus 로고    scopus 로고
    • Optimization of gene expression by natural selection
    • Bedford, T. & Hartl, D.L. (2009). Optimization of gene expression by natural selection. Proc. Natl Acad. Sci. USA, 106, 1133-1138.
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 1133-1138
    • Bedford, T.1    Hartl, D.L.2
  • 3
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini, Y. & Hochberg, Y. (1995). Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B, 57, 289-300.
    • (1995) J. R. Stat. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 4
    • 33748925257 scopus 로고    scopus 로고
    • A role for genetic accommodation in evolution?
    • Braendle, C. & Flatt, T. (2006). A role for genetic accommodation in evolution? BioEssays, 28, 868-873.
    • (2006) BioEssays , vol.28 , pp. 868-873
    • Braendle, C.1    Flatt, T.2
  • 5
    • 0000820360 scopus 로고
    • Changes in free amino acid concentrations during osmotic response in the intertidal copepod Tigriopus californicus
    • Burton, R.S. & Feldman, M.W. (1982). Changes in free amino acid concentrations during osmotic response in the intertidal copepod Tigriopus californicus. Comp. Biochem. Physiol., 73A, 441-445.
    • (1982) Comp. Biochem. Physiol. , vol.73 , pp. 441-445
    • Burton, R.S.1    Feldman, M.W.2
  • 9
    • 23144432213 scopus 로고    scopus 로고
    • Optimality and evolutionary tuning of the expression level of a protein
    • Dekel, E. & Alon, U. (2005). Optimality and evolutionary tuning of the expression level of a protein. Nature, 436, 588-592.
    • (2005) Nature , vol.436 , pp. 588-592
    • Dekel, E.1    Alon, U.2
  • 10
    • 0021561265 scopus 로고
    • Predation of Heterocope septentrionalis on two species of Daphnia: morphological defenses and their costs
    • Dodson, S.I. (1984). Predation of Heterocope septentrionalis on two species of Daphnia: morphological defenses and their costs. Ecology, 65, 1249-1257.
    • (1984) Ecology , vol.65 , pp. 1249-1257
    • Dodson, S.I.1
  • 11
    • 0038441327 scopus 로고    scopus 로고
    • Microbial genetics: evolution experiments with microorganisms: the dynamics and genetic bases of adaptation
    • Elena, S.F. & Lenski, R.E. (2003). Microbial genetics: evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Nat. Rev. Genet., 4, 457-469.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 457-469
    • Elena, S.F.1    Lenski, R.E.2
  • 12
    • 0344742276 scopus 로고    scopus 로고
    • Detecting ecological trade-offs using selection experiments
    • Fry, J.D. (2003). Detecting ecological trade-offs using selection experiments. Ecology, 84, 1672-1678.
    • (2003) Ecology , vol.84 , pp. 1672-1678
    • Fry, J.D.1
  • 14
    • 0035937505 scopus 로고    scopus 로고
    • Intracellular functions of N-linked glycans
    • Helenius, A. & Aebi, M. (2001). Intracellular functions of N-linked glycans. Science, 291, 2364-2369.
    • (2001) Science , vol.291 , pp. 2364-2369
    • Helenius, A.1    Aebi, M.2
  • 16
    • 76149126133 scopus 로고    scopus 로고
    • +-ATPase in a 'freshwater shrimp' Palaemonetes argentinus (Caridea, Palaemonidae): ontogenetic and salinity-induced changes
    • +-ATPase in a 'freshwater shrimp' Palaemonetes argentinus (Caridea, Palaemonidae): ontogenetic and salinity-induced changes. Aquat. Biol., 3, 283-290.
    • (2008) Aquat. Biol. , vol.3 , pp. 283-290
    • Ituarte, R.B.1    Lopez Mananes, A.A.2    Spivak, E.D.3    Anger, K.4
  • 17
    • 0346888587 scopus 로고    scopus 로고
    • On parametric empirical Bayes methods for comparing multiple groups using replicated gene expression profiles
    • Kendziorski, C.M., Newton, M.A., Lan, H. & Gould, M.N. (2003). On parametric empirical Bayes methods for comparing multiple groups using replicated gene expression profiles. Stat. Med., 22, 3899-3914.
    • (2003) Stat. Med. , vol.22 , pp. 3899-3914
    • Kendziorski, C.M.1    Newton, M.A.2    Lan, H.3    Gould, M.N.4
  • 18
    • 0028137640 scopus 로고
    • ADaM, an artificial freshwater for the culture of zooplankton
    • Kluttgen, B., Dulmer, U., Engels, M. & Ratte, H.T. (1994). ADaM, an artificial freshwater for the culture of zooplankton. Water Res., 28, 743-746.
    • (1994) Water Res. , vol.28 , pp. 743-746
    • Kluttgen, B.1    Dulmer, U.2    Engels, M.3    Ratte, H.T.4
  • 19
    • 65249100208 scopus 로고    scopus 로고
    • The cost of gene expression underlies a fitness trade-off in yeast
    • Lang, G.I., Murray, A.W. & Botstein, D. (2009). The cost of gene expression underlies a fitness trade-off in yeast. Proc. Natl Acad. Sci. USA, 106, 5755-5760.
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 5755-5760
    • Lang, G.I.1    Murray, A.W.2    Botstein, D.3
  • 20
    • 33847283994 scopus 로고    scopus 로고
    • Rapid evolution in response to introduced predators II: the contribution of adaptive plasticity
    • Latta, L.C., Bakelar, J.W., Knapp, R.A. & Pfrender, M.E. (2007). Rapid evolution in response to introduced predators II: the contribution of adaptive plasticity. BMC Evol. Biol., 7, 21.
    • (2007) BMC Evol. Biol. , vol.7 , pp. 21
    • Latta, L.C.1    Bakelar, J.W.2    Knapp, R.A.3    Pfrender, M.E.4
  • 22
    • 70849137211 scopus 로고    scopus 로고
    • Extensive, recent intron gains in Daphnia populations
    • Li, W., Tucker, A.E., Sung, W., Thomas, W.K. & Lynch, M. (2009). Extensive, recent intron gains in Daphnia populations. Science, 326, 1260-1262.
    • (2009) Science , vol.326 , pp. 1260-1262
    • Li, W.1    Tucker, A.E.2    Sung, W.3    Thomas, W.K.4    Lynch, M.5
  • 23
    • 84863484445 scopus 로고    scopus 로고
    • Dual-labeled expression microarray protocol for high-throughput genomic investigations. CGB Technical Report 2011-01.
    • Lopez, J.A. & Colbourne, J.K. (2011). Dual-labeled expression microarray protocol for high-throughput genomic investigations. CGB Technical Report 2011-01.
    • (2011)
    • Lopez, J.A.1    Colbourne, J.K.2
  • 24
    • 0032190661 scopus 로고    scopus 로고
    • Protection of plasma membrane of onion epidermal cells by glycinebetaine and proline against NaCl stress
    • Mansour, M.M.F. (1998). Protection of plasma membrane of onion epidermal cells by glycinebetaine and proline against NaCl stress. Plant Physiol. Biochem., 36, 767-772.
    • (1998) Plant Physiol. Biochem. , vol.36 , pp. 767-772
    • Mansour, M.M.F.1
  • 25
    • 77951596313 scopus 로고    scopus 로고
    • Gene up-regulation in response to predator kairomones in the water flea, Daphnia pulex
    • Miyakawa, H., Imai, M., Sugimoto, N., Ishikawa, Y., Ishikawa, A., Ishigaki, H. et al. (2010). Gene up-regulation in response to predator kairomones in the water flea, Daphnia pulex. BMC Dev. Biol., 10, 45.
    • (2010) BMC Dev. Biol. , vol.10 , pp. 45
    • Miyakawa, H.1    Imai, M.2    Sugimoto, N.3    Ishikawa, Y.4    Ishikawa, A.5    Ishigaki, H.6
  • 26
    • 33947395197 scopus 로고    scopus 로고
    • The fitness cost of generalization: present limitations and future possible solutions
    • Palaima, A. (2007). The fitness cost of generalization: present limitations and future possible solutions. Biol. J. Linn. Soc., 90, 583-590.
    • (2007) Biol. J. Linn. Soc. , vol.90 , pp. 583-590
    • Palaima, A.1
  • 27
    • 1642282812 scopus 로고    scopus 로고
    • Is a jack-of-all-temperatures a master of none? An experimental test with Daphnia pulicaria
    • Palaima, A. & Spitze, K. (2004). Is a jack-of-all-temperatures a master of none? An experimental test with Daphnia pulicaria. Evol. Ecol. Res., 6, 215-225.
    • (2004) Evol. Ecol. Res. , vol.6 , pp. 215-225
    • Palaima, A.1    Spitze, K.2
  • 28
    • 33745981182 scopus 로고    scopus 로고
    • Phenotypic plasticity and evolution by genetic assimilation
    • Pigliucci, M., Murren, C.J. & Schlichting, C.D. (2006). Phenotypic plasticity and evolution by genetic assimilation. J. Exp. Biol., 209, 2362-2367.
    • (2006) J. Exp. Biol. , vol.209 , pp. 2362-2367
    • Pigliucci, M.1    Murren, C.J.2    Schlichting, C.D.3
  • 29
    • 17644413242 scopus 로고    scopus 로고
    • A regulatory network analysis of phenotypic plasticity in yeast
    • Promislow, D. (2005). A regulatory network analysis of phenotypic plasticity in yeast. Am. Nat., 165, 515-523.
    • (2005) Am. Nat. , vol.165 , pp. 515-523
    • Promislow, D.1
  • 30
    • 0037456823 scopus 로고    scopus 로고
    • Genetics of gene expression surveyed in maize, mouse and man
    • Schadt, E.E., Monks, S.A., Drake, T.A., Lusis, A.J., Che, N., Colinayo, V. et al. (2003). Genetics of gene expression surveyed in maize, mouse and man. Nature, 422, 297-302.
    • (2003) Nature , vol.422 , pp. 297-302
    • Schadt, E.E.1    Monks, S.A.2    Drake, T.A.3    Lusis, A.J.4    Che, N.5    Colinayo, V.6
  • 31
    • 77749297988 scopus 로고    scopus 로고
    • Phenotypic plasticity facilitates recurrent rapid adaptation to introduced predators
    • Scoville, A.G. & Pfrender, M.E. (2010). Phenotypic plasticity facilitates recurrent rapid adaptation to introduced predators. Proc. Natl Acad. Sci. USA, 107, 4260-4263.
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 4260-4263
    • Scoville, A.G.1    Pfrender, M.E.2
  • 32
    • 0038066347 scopus 로고    scopus 로고
    • Molecular responses to drought, salinity and frost: common and different paths for plant protection
    • Seki, M., Kamei, A., Yamaguchi-Shinozaki, K. & Shinozaki, K. (2003). Molecular responses to drought, salinity and frost: common and different paths for plant protection. Curr. Opin. Biotech., 14, 194-199.
    • (2003) Curr. Opin. Biotech. , vol.14 , pp. 194-199
    • Seki, M.1    Kamei, A.2    Yamaguchi-Shinozaki, K.3    Shinozaki, K.4
  • 33
    • 45249125699 scopus 로고
    • Hydroxyl radical scavenging activity of compatible solutes
    • Smirnoff, N. & Cumber, Q.J. (1989). Hydroxyl radical scavenging activity of compatible solutes. Phytochemistry, 28, 1057-1060.
    • (1989) Phytochemistry , vol.28 , pp. 1057-1060
    • Smirnoff, N.1    Cumber, Q.J.2
  • 34
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes for assessing differential expression in microarray experiments
    • Article 3. DOI: 10.2202/1544-6115.1027
    • Smyth, G.K. (2004). Linear models and empirical Bayes for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol., 3, Article 3. DOI: 10.2202/1544-6115.1027.
    • (2004) Stat. Appl. Genet. Mol. Biol. , vol.3
    • Smyth, G.K.1
  • 35
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
    • Subramanian, A., Tamayo, P., Mootha, V.K., Mukherjee, S., Ebert, B.L., Gillette, M.A. et al. (2005). Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl Acad. Sci. USA, 102, 15545-15550.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 15545-15550
    • Subramanian, A.1    Tamayo, P.2    Mootha, V.K.3    Mukherjee, S.4    Ebert, B.L.5    Gillette, M.A.6
  • 36
    • 19944434202 scopus 로고    scopus 로고
    • Monitoring the expression profiles of genes induced by hyperosmotic, high salinity, and oxidative stress and abscisic acid treatment in Arabidopsis cell culture using a full-length cDNA microarray
    • Takahashi, S., Seki, M., Ishida, J., Satou, M. & Sakurai, T. (2004). Monitoring the expression profiles of genes induced by hyperosmotic, high salinity, and oxidative stress and abscisic acid treatment in Arabidopsis cell culture using a full-length cDNA microarray. Plant Mol. Biol., 56, 29-55.
    • (2004) Plant Mol. Biol. , vol.56 , pp. 29-55
    • Takahashi, S.1    Seki, M.2    Ishida, J.3    Satou, M.4    Sakurai, T.5
  • 38
    • 0034535109 scopus 로고    scopus 로고
    • Cost of host radiation in an RNA virus
    • Turner, P.E. & Elena, S.F. (2000). Cost of host radiation in an RNA virus. Genetics, 156, 1465-1470.
    • (2000) Genetics , vol.156 , pp. 1465-1470
    • Turner, P.E.1    Elena, S.F.2
  • 39
    • 0036175615 scopus 로고    scopus 로고
    • The genetic architecture of ecological specialization: correlated gene effects on host use and habitat choice in pea aphids
    • Via, S. & Hawthorne, D.J. (2002). The genetic architecture of ecological specialization: correlated gene effects on host use and habitat choice in pea aphids. Am. Nat., 159, S76-S88.
    • (2002) Am. Nat. , vol.159
    • Via, S.1    Hawthorne, D.J.2
  • 40
    • 0023471023 scopus 로고
    • Life history variation among low-arctic clones of obligately parthenogenetic Daphnia pulex: a diploid-polyploid complex
    • Weider, L.J. (1987). Life history variation among low-arctic clones of obligately parthenogenetic Daphnia pulex: a diploid-polyploid complex. Oecologia, 73, 251-256.
    • (1987) Oecologia , vol.73 , pp. 251-256
    • Weider, L.J.1
  • 41
    • 0001242108 scopus 로고
    • A test of the "general-purpose" genotype hypothesis: differential tolerance to thermal and salinity stress among Daphnia clones
    • Weider, L.J. (1993). A test of the "general-purpose" genotype hypothesis: differential tolerance to thermal and salinity stress among Daphnia clones. Evolution, 47, 965-969.
    • (1993) Evolution , vol.47 , pp. 965-969
    • Weider, L.J.1
  • 42
    • 0023483023 scopus 로고
    • Ecological and physiological differentiation among low-arctic clones of Daphnia pulex
    • Weider, L.J. & Hebert, P.D.N. (1987). Ecological and physiological differentiation among low-arctic clones of Daphnia pulex. Ecology, 68, 188-198.
    • (1987) Ecology , vol.68 , pp. 188-198
    • Weider, L.J.1    Hebert, P.D.N.2
  • 43
    • 73949106758 scopus 로고    scopus 로고
    • Long-term changes in metapopulation genetic structure: a quarter-century retrospective study on low-Arctic rock pool Daphnia
    • Weider, L.J., Frisch, D. & Hebert, P.D.N. (2010). Long-term changes in metapopulation genetic structure: a quarter-century retrospective study on low-Arctic rock pool Daphnia. Proc. R. Soc. B, 277, 139-146.
    • (2010) Proc. R. Soc. B , vol.277 , pp. 139-146
    • Weider, L.J.1    Frisch, D.2    Hebert, P.D.N.3
  • 44
    • 0027837589 scopus 로고
    • Impact of copepod predation on distribution patterns of Daphnia pulex clones
    • Wilson, C.C. & Hebert, P.D.N. (1993). Impact of copepod predation on distribution patterns of Daphnia pulex clones. Limnol. Oceanogr., 38, 1304-1310.
    • (1993) Limnol. Oceanogr. , vol.38 , pp. 1304-1310
    • Wilson, C.C.1    Hebert, P.D.N.2
  • 45
    • 0000066618 scopus 로고
    • Proteins, enzymes and inorganic ions
    • (eds Lauchli, A. & Pirson, A.). Springer, Berlin
    • Wyn Jones, R.G. & Pollard, A. (1983). Proteins, enzymes and inorganic ions. In: Encyclopedia of Plant Physiology: New Series Vol. 15B (eds Lauchli, A. & Pirson, A.). Springer, Berlin, pp. 528-562.
    • (1983) Encyclopedia of Plant Physiology: New Series , vol.15 B , pp. 528-562
    • Wyn Jones, R.G.1    Pollard, A.2
  • 47
    • 0020336190 scopus 로고
    • Living with water stress: evolution of osmolyte systems
    • Yancey, P.H., Clark, W.E., Hand, S.C., Bowlus, R.D. & Somero, G.N. (1982). Living with water stress: evolution of osmolyte systems. Science, 217, 1214-1222.
    • (1982) Science , vol.217 , pp. 1214-1222
    • Yancey, P.H.1    Clark, W.E.2    Hand, S.C.3    Bowlus, R.D.4    Somero, G.N.5
  • 48
    • 79955153792 scopus 로고    scopus 로고
    • Predator-induced defense makes Daphnia more vulnerable to parasites
    • Yin, M., Laforsch, C., Lohr, J.N. & Wolinska, J. (2011). Predator-induced defense makes Daphnia more vulnerable to parasites. Evolution, 65, 1482-1488.
    • (2011) Evolution , vol.65 , pp. 1482-1488
    • Yin, M.1    Laforsch, C.2    Lohr, J.N.3    Wolinska, J.4
  • 50
    • 0036999615 scopus 로고    scopus 로고
    • Salt and drought stress signal transduction in plants
    • Zhu, J.K. (2002). Salt and drought stress signal transduction in plants. Annu. Rev. Plant Biol., 53, 247-273.
    • (2002) Annu. Rev. Plant Biol. , vol.53 , pp. 247-273
    • Zhu, J.K.1


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