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Volumn 33, Issue 1, 2012, Pages 9-17

A DNA barcode library for Korean Chironomidae (Insecta: Diptera) and indexes for defining barcode gap

Author keywords

Chironomidae; DNA barcode gap; DNA barcode library; Dna barcoding; Reverse taxonomy

Indexed keywords

CYTOCHROME C OXIDASE;

EID: 84863451166     PISSN: 10168478     EISSN: 02191032     Source Type: Journal    
DOI: 10.1007/s10059-012-2151-2     Document Type: Article
Times cited : (23)

References (42)
  • 1
    • 3442892197 scopus 로고    scopus 로고
    • Studies of aquatic insects in the Atna River 1987-2002
    • DOI 10.1023/B:HYDR.0000026352.40631.37
    • Aagaard, K., Solem, J. O., Bongard, T., and Hanssen, O. (2004). Studies of aquatic insects in the Atna River 1987-2002. Hydrobiologia 521, 87-105. (Pubitemid 39001047)
    • (2004) Hydrobiologia , vol.521 , Issue.1-3 , pp. 87-105
    • Aagaard, K.1    Solem, J.O.2    Bongard, T.3    Hanssen, O.4
  • 2
    • 76649116554 scopus 로고    scopus 로고
    • Morphological deformities in Chironomus spp. (Diptera: Chironomidae) larvae as a tool for impact assessment of anthropogenic and environmental stresses on three rivers in the Juru River System, Penang, Malaysia
    • Al-Shami, S., Rawi, C. S. M., Nor, S. A. M., Ahmad, A. H., and Ali, A. (2010). Morphological deformities in Chironomus spp. (Diptera: Chironomidae) larvae as a tool for impact assessment of anthropogenic and environmental stresses on three rivers in the Juru River System, Penang, Malaysia. Environ. Entomol. 39, 210-222.
    • (2010) Environ. Entomol. , vol.39 , pp. 210-222
    • Al-Shami, S.1    Rawi, C.S.M.2    Nor, S.A.M.3    Ahmad, A.H.4    Ali, A.5
  • 3
    • 0026813946 scopus 로고
    • Chironomid midge allergy
    • Baur, X. (1992). Chironomid midge allergy. Arerugi 41, 81-85.
    • (1992) Arerugi , vol.41 , pp. 81-85
    • Baur, X.1
  • 4
    • 0035358999 scopus 로고    scopus 로고
    • Mitochondrial pseudogenes: Evolution's misplaced witnesses
    • DOI 10.1016/S0169-5347(01)02151-6, PII S0169534701021516
    • Bensasson, D., Zhang, D., Hartl, D. L., and Hewitt, G. M. (2001). Mitochondrial pseudogenes: evolution's misplaced witnesses. Trends. Ecol. Evol. 16, 314-321. (Pubitemid 32706648)
    • (2001) Trends in Ecology and Evolution , vol.16 , Issue.6 , pp. 314-321
    • Bensasson, D.1    Zhang, D.-X.2    Hartl, D.L.3    Hewitt, G.M.4
  • 6
    • 22944441015 scopus 로고    scopus 로고
    • The utility of DNA markers in classical taxonomy: Using cytochrome oxidase I markers to differentiate Australian Cladopelma (Diptera: Chironomidae) midges
    • Carew, M. E., Pettigrove, V., and Hoffmann, A. A. (2005). The utility of DNA markers in classical taxonomy: using cytochrome oxidase I markers to differentiate Australian Cladopelma (Diptera: Chironomidae) midges. Ann. Entomol. Soc. Am. 98, 587-594. (Pubitemid 41052086)
    • (2005) Annals of the Entomological Society of America , vol.98 , Issue.4 , pp. 587-594
    • Carew, M.E.1    Pettigrove, V.2    Hoffman, A.A.3
  • 7
    • 77956879874 scopus 로고    scopus 로고
    • Pyrosequencing faecal DNA to determine diet of little penguins: Is what goes in what comes out?
    • Deagle, B. E., Chiaradia, A., McInnes, J., and Jarman, S. N. (2010). Pyrosequencing faecal DNA to determine diet of little penguins: is what goes in what comes out? Conserv. Genet. 11, 2039-2048.
    • (2010) Conserv. Genet. , vol.11 , pp. 2039-2048
    • Deagle, B.E.1    Chiaradia, A.2    McInnes, J.3    Jarman, S.N.4
  • 8
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • DOI 10.1093/nar/gkh340
    • Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797. (Pubitemid 38832724)
    • (2004) Nucleic Acids Research , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 9
    • 34248161638 scopus 로고    scopus 로고
    • A comprehensive DNA sequence library is essential for identification with DNA barcodes
    • DOI 10.1016/j.ympev.2006.11.021, PII S1055790306004775
    • Ekrem, T., Willassen, E., and Stur, E. (2007). A comprehensive DNA sequence library is essential for identification with DNA barcodes. Mol. Phylogenet. Evol. 43, 530-542. (Pubitemid 46705497)
    • (2007) Molecular Phylogenetics and Evolution , vol.43 , Issue.2 , pp. 530-542
    • Ekrem, T.1    Willassen, E.2    Stur, E.3
  • 10
    • 0028528103 scopus 로고
    • DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates
    • Folmer, O., Black, M., Hoeh, W., Lutz, R., and Vrijenhoek, R. (1994). DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotech. 3, 294-299.
    • (1994) Mol. Mar. Biol. Biotech. , vol.3 , pp. 294-299
    • Folmer, O.1    Black, M.2    Hoeh, W.3    Lutz, R.4    Vrijenhoek, R.5
  • 11
    • 70350771134 scopus 로고    scopus 로고
    • Mitochondrial DNA as a marker of molecular diversity: A reappraisal
    • Galtier, N., Nabholz, B., Glemin, S., and Hurst, G. D. D. (2009). Mitochondrial DNA as a marker of molecular diversity: a reappraisal. Mol. Ecol. 18, 4541-4550.
    • (2009) Mol. Ecol. , vol.18 , pp. 4541-4550
    • Galtier, N.1    Nabholz, B.2    Glemin, S.3    Hurst, G.D.D.4
  • 12
    • 31344432889 scopus 로고    scopus 로고
    • The promise of DNA barcoding for taxonomy
    • DOI 10.1080/10635150500354886
    • Hebert, P. D. N., and Gregory, T. R. (2005). The promise of DNA barcoding for taxonomy. Syst. Biol. 54, 852-859. (Pubitemid 43142301)
    • (2005) Systematic Biology , vol.54 , Issue.5 , pp. 852-859
    • Hebert, P.D.N.1    Gregory, T.R.2
  • 13
    • 0042531561 scopus 로고    scopus 로고
    • Barcoding animal life: Cytochrome c oxidase subunit 1 divergences among closely related species
    • Hebert, P. D. N., Ratnasingham, S., and deWaard, J. R. (2003). Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc. R. Soc. Lond. B 270, 96-99.
    • (2003) Proc. R. Soc. Lond. B , vol.270 , pp. 96-99
    • Hebert, P.D.N.1    Ratnasingham, S.2    DeWaard, J.R.3
  • 14
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro H. H, ed. New York: Academic Press
    • Jukes, T. H., and Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism. Munro H. H, ed. (New York: Academic Press), pp. 21-132.
    • (1969) Mammalian Protein Metabolism. , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 16
    • 79957772476 scopus 로고    scopus 로고
    • DNA Barcode-based molecular identification system for fish species
    • Kim, S., Eo, H. S., Koo, H., Choi, J. K., and Kim, W. (2010). DNA Barcode-based molecular identification system for fish species. Mol. Cells 30, 507-512.
    • (2010) Mol. Cells , vol.30 , pp. 507-512
    • Kim, S.1    Eo, H.S.2    Koo, H.3    Choi, J.K.4    Kim, W.5
  • 18
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • DOI 10.1007/BF01731581
    • Kimura, M. (1980). A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111-120. (Pubitemid 11166431)
    • (1980) Journal of Molecular Evolution , vol.16 , Issue.2 , pp. 111-120
    • Kimura, M.1
  • 19
    • 27044446175 scopus 로고
    • Chironomidae as a pest in the Northern Sudan
    • Lewis, D. J. (1956). Chironomidae as a pest in the Northern Sudan. Acta Trop. 13, 142-158.
    • (1956) Acta Trop. , vol.13 , pp. 142-158
    • Lewis, D.J.1
  • 20
    • 29144517946 scopus 로고    scopus 로고
    • Reverse taxonomy: An approach towards determining the diversity of meiobenthic organisms based on ribosomal RNA signature sequences
    • DOI 10.1098/rstb.2005.1723
    • Markmann, M., and Tautz, D. (2005). Reverse taxonomy: an approach towards determining the diversity of meiobenthic organisms based on ribosomal RNA signature sequences. Philos. Trans. R. Soc. B Biol. Sci. 360, 1917-1924. (Pubitemid 44365052)
    • (2005) Philosophical Transactions of the Royal Society B: Biological Sciences , vol.360 , Issue.1462 , pp. 1917-1924
    • Markmann, M.1    Tautz, D.2
  • 22
    • 33749535839 scopus 로고    scopus 로고
    • DNA barcoding and taxonomy in Diptera: A tale of high intraspecific variability and low identification success
    • Meier, R., Shiyang, K., Vaidya, G., and Ng, P. K. L. (2006). DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success. Syst. Biol. 55, 715-728.
    • (2006) Syst. Biol. , vol.55 , pp. 715-728
    • Meier, R.1    Shiyang, K.2    Vaidya, G.3    Ng, P.K.L.4
  • 23
    • 53849115779 scopus 로고    scopus 로고
    • The use of mean instead of smallest interspecific distances exaggerates the size of the "barcoding gap" and leads to misidentification
    • Meier, R., Zhang, G., and Ali, F. (2008). The use of mean instead of smallest interspecific distances exaggerates the size of the "barcoding gap" and leads to misidentification. Syst. Biol. 57, 809-813.
    • (2008) Syst. Biol. , vol.57 , pp. 809-813
    • Meier, R.1    Zhang, G.2    Ali, F.3
  • 24
    • 29144473686 scopus 로고    scopus 로고
    • DNA barcoding: Error rates based on comprehensive sampling
    • Meyer, C. P., and Paulay, G. (2005). DNA barcoding: error rates based on comprehensive sampling. PLoS Biol. 3, e422.
    • (2005) PLoS Biol. , vol.3
    • Meyer, C.P.1    Paulay, G.2
  • 25
    • 33644605459 scopus 로고    scopus 로고
    • Statistical approaches for DNA barcoding
    • Nielsen, R., and Matz, M. (2006). Statistical approaches for DNA barcoding. Syst. Biol. 55, 162-169.
    • (2006) Syst. Biol. , vol.55 , pp. 162-169
    • Nielsen, R.1    Matz, M.2
  • 26
    • 34248189677 scopus 로고    scopus 로고
    • Identification of genes suitable for DNA barcoding of morphologically indistinguishable Korean halichondriidae sponges
    • Park, M. H., Sim, C. J., Baek, J., and Min, G. S. (2007). Identification of genes suitable for DNA barcoding of morphologically indistinguishable Korean Halichondriidae sponges. Mol. Cells 23, 220-227. (Pubitemid 46711684)
    • (2007) Molecules and Cells , vol.23 , Issue.2 , pp. 220-227
    • Park, M.-H.1    Sim, C.-J.2    Baek, J.3    Min, G.-S.4
  • 27
    • 77954867581 scopus 로고    scopus 로고
    • DNA barcode data confirm new species and reveal cryptic diversity in Chilean Smicridea (Trichoptera: Hydropsychidae)
    • Pauls, S. U., Blahnik, R. J., Zhou, X., Wardwell, C. T., and Holzenthal, R. W. (2010). DNA barcode data confirm new species and reveal cryptic diversity in Chilean Smicridea (Trichoptera: Hydropsychidae). J. North Am. Benthol. Soc. 29, 1058-1074.
    • (2010) J. North Am. Benthol. Soc. , vol.29 , pp. 1058-1074
    • Pauls, S.U.1    Blahnik, R.J.2    Zhou, X.3    Wardwell, C.T.4    Holzenthal, R.W.5
  • 28
    • 34247367142 scopus 로고    scopus 로고
    • Utility of DNA taxonomy and barcoding for the inference of larval community structure in morphologically cryptic Chironomus (Diptera) species
    • DOI 10.1111/j.1365-294X.2006.03136.x
    • Pfenninger, M., Nowak, C., Kley, C., Steinke, D., and Streit, B. (2007). Utility of DNA taxonomy and barcoding for the inference of larval community structure in morphologically cryptic Chironomus (Diptera) species. Mol. Ecol. 16, 1957-1968. (Pubitemid 46639982)
    • (2007) Molecular Ecology , vol.16 , Issue.9 , pp. 1957-1968
    • Pfenninger, M.1    Nowak, C.2    Kley, C.3    Steinke, D.4    Streit, B.5
  • 29
    • 77957961612 scopus 로고    scopus 로고
    • DNA barcodes for marine biodiversity: Moving fast forward?
    • Radulovici, A. E., Archambault, P., and Dufresne, F. (2010). DNA barcodes for marine biodiversity: moving fast forward? Diversity 2, 450-472.
    • (2010) Diversity , vol.2 , pp. 450-472
    • Radulovici, A.E.1    Archambault, P.2    Dufresne, F.3
  • 30
    • 84863468286 scopus 로고    scopus 로고
    • One new and six unrecorded species of chironomidae (Insecta: Diptera) in Korea
    • Ree, H. I. (2009). One new and six unrecorded species of chironomidae (Insecta: Diptera) in Korea. Korean J. Syst. Zool. 25, 49-59.
    • (2009) Korean J. Syst. Zool. , vol.25 , pp. 49-59
    • Ree, H.I.1
  • 31
    • 51649110939 scopus 로고    scopus 로고
    • Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified
    • Song, H., Buhay, J. E., Whiting, M. F., and Crandall, K. A. (2008). Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified. Proc. Natl. Acad. Sci. USA 105, 13486-13491.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 13486-13491
    • Song, H.1    Buhay, J.E.2    Whiting, M.F.3    Crandall, K.A.4
  • 33
    • 0026711010 scopus 로고
    • Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+ C-content biases
    • Tamura, K. (1992). Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+ C-content biases. Mol. Biol. Evol. 9, 678-687.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 678-687
    • Tamura, K.1
  • 34
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura, K., and Nei, M. (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10, 512-526. (Pubitemid 23157236)
    • (1993) Molecular Biology and Evolution , vol.10 , Issue.3 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 35
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • Tamura, K., Dudley, J., Nei, M., and Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24, 1596-1599. (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 37
    • 19444386447 scopus 로고    scopus 로고
    • Chironomids as a tool for inferring Holocene climate: An assessment based on six sites in southern Scandinavia
    • DOI 10.1016/j.quascirev.2004.10.010, PII S0277379104003075
    • Velle, G., Brooks, S. J., Birks, H. J. B., and Willassen, E. (2005). Chironomids as a tool for inferring Holocene climate: an assessment based on six sites in southern Scandinavia. Quaternary Sci. Rev. 24, 1429-1462. (Pubitemid 40722001)
    • (2005) Quaternary Science Reviews , vol.24 , Issue.12-13 , pp. 1429-1462
    • Velle, G.1    Brooks, S.J.2    Birks, H.J.B.3    Willassen, E.4
  • 38
    • 34047126999 scopus 로고    scopus 로고
    • Does the DNA barcoding gap exist? A case study in blue butterflies (Lepidoptera: Lycaenidae)
    • Wiemers, M., and Fiedler, K. (2007). Does the DNA barcoding gap exist? a case study in blue butterflies (Lepidoptera: Lycaenidae). Front. Zool. 4, 8-16.
    • (2007) Front. Zool. , vol.4 , pp. 8-16
    • Wiemers, M.1    Fiedler, K.2
  • 39
    • 0021574865 scopus 로고
    • The chironomid larvae of a small chalk stream in Berkshire, England
    • Wright, J. F. (1984). The chironomid larvae of a small chalk stream in Berkshire, England. Ecol. Entomol. 9, 231-238. (Pubitemid 15272984)
    • (1984) Ecological Entomology , vol.9 , Issue.2 , pp. 231-238
    • Wright, J.F.1
  • 41
  • 42
    • 74849128562 scopus 로고    scopus 로고
    • Towards a comprehensive barcode library for arctic life-Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada
    • Zhou, X., Adamowicz, S. J., Jacobus, L. M., DeWalt, R. E., and Hebert, P. D. N. (2009). Towards a comprehensive barcode library for arctic life-Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada. Front. Zool. 6, 30.
    • (2009) Front. Zool. , vol.6 , pp. 30
    • Zhou, X.1    Adamowicz, S.J.2    Jacobus, L.M.3    DeWalt, R.E.4    Hebert, P.D.N.5


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