Identification of tobacco proteins associated with the stem-loop 1 RNAs of potato virus X

Molecules and Cells

Volumn 33, Issue 4, 2012, Pages 379-384

  Cho, Sang Yun ^a   Cho, Won Kyong ^a   Kim, Kook Hyung ^a,b  

^a Seoul National University   (South Korea)

^b Seoul National University   (South Korea)

Author keywords

Host protein; Northwestern blot; PVX; RNA protein interaction; SL1 RNAs

Indexed keywords

CAPSID PROTEIN; NBCPIP2A PROTEIN; NBMBF1 PROTEIN; NBMPB2CB PROTEIN; UNCLASSIFIED DRUG; VEGETABLE PROTEIN; VIRUS PROTEIN; VIRUS RNA;

ARTICLE; BINDING KINETICS; GEL MOBILITY SHIFT ASSAY; HOST PATHOGEN INTERACTION; IN VITRO STUDY; ISOELECTRIC FOCUSING; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NICOTIANA BENTHAMIANA; NONHUMAN; NORTHERN BLOTTING; POLYACRYLAMIDE GEL ELECTROPHORESIS; POTEXVIRUS; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN PROTEIN INTERACTION; PROTEIN SECONDARY STRUCTURE; RNA ANALYSIS; TOBACCO; TWO DIMENSIONAL ELECTROPHORESIS; WESTERN BLOTTING;

HOST-PATHOGEN INTERACTIONS; PLANT PROTEINS; POTEXVIRUS; RNA, SPLICED LEADER; RNA, VIRAL; RNA-BINDING PROTEINS; TOBACCO;

MIRIDAE; NICOTIANA TABACUM; POTATO VIRUS X;

EID: 84863439691     PISSN: 10168478     EISSN: 02191032     Source Type: Journal    
DOI: 10.1007/s10059-012-2298-x     Document Type: Article

References (31)

1. Asano, M., Satoh, R., Mochizuki, A., Tsuda, S., Yamanaka, T., Nishiguchi, M., Hirai, K., Meshi, T., Naito, S., and Ishikawa, M. (2005). Tobamovirus-resistant tobacco generated by RNA interference directed against host genes. FEBS Lett. 579, 4479-4484. (Pubitemid 41116385)
2. Bichsel, V.E., Walz, A., and Bickel, M. (1997). Identification of proteins binding specifically to the 3′-untranslated region of granu-locyte/macrophage-colony stimulating factor mRNA. Nucleic Acids Res. 25, 2417-2423. (Pubitemid 27303702)
3. Chen, S.C., Desprez, A., and Olsthoorn, R.C.L. (2010). Structural homology between Bamboo mosaic virus and its satellite RNAs in the 5′ untranslated region. J. Gen. Virol. 91, 782-787.
4. Cho, S.-Y., and Kim, K.-H. (2012). Identification of the capsid protein-binding region of the SL1(+) RNA located at the 5′ region of the Potato virus X genome. Plant Pathol. J. 28, 75-80.
5. Cho, S.-Y., Cho, W.-K., Sohn, S.-H., and Kim, K.-H. (2012). Interaction of the host protein NbDnaJ with Potato virus X minus-strand stem-loop 1 RNA and capsid protein affects viral replication and movement, Biochem. Biophys. Res. Commun. 417, 451-456.
6. Curin, M., Ojangu, E.L., Trutnyeva, K., Ilau, B., Truve, E., and Waig-mann, E. (2007). MPB2C, a microtubule-associated plant factor, is required for microtubular accumulation of Tobacco mosaic virus movement protein in plants. Plant Physiol. 143, 801-811. (Pubitemid 46940974)
7. Fujisaki, K., and Ishikawa, M. (2008). Identification of an Arabido-psis thaliana protein that binds to Tobacco mosaic virus geno-mic RNA and inhibits its multiplication. Virology 380, 402-411.
8. Furuya, T., and Lai, M.M. (1993). Three different cellular proteins bind to complementary sites on the 5′-end-positive and 3′-end-negative strands of mouse hepatitis virus RNA. J. Virol. 67, 7215-7222. (Pubitemid 23343847)
9. Gustafson, W.C., Taylor, C.W., Valdez, B.C., Henning, D., Phippard, A., Ren, Y., Busch, H., and Durban, E. (1998). Nucleolar protein p120 contains an arginine-rich domain that binds to ribosomal RNA. Biochem. J. 331, 387-393. (Pubitemid 28182150)
10. Hemenway, C., Weiss, J., O'Connell, K., and Tumer, N.E. (1990). Characterization of infectious transcripts from a potato virus X cDNA clone. Virology 175, 365-371. (Pubitemid 20133438)
11. Hofius, D., Maier, A.T., Dietrich, C., Jungkunz, I., Bornke, F., Maiss, E., and Sonnewald, U. (2007). Capsid protein-mediated recruitment of host DnaJ-like proteins is required for Potato virus Y infection in tobacco plants. J. Virol. 81, 11870-11880. (Pubitemid 47623819)
12. Kang, S., Oh, S.-K., Kim, J.-J., Choi, D., and Baek, K.-H. (2010). NMMP1, a matrix metalloprotease in Nicotiana benthamiana has a role in protection against bacterial infection. Plant Pathol. J. 26, 402-408.
13. Kim, K.-H., and Hemenway, C. (1997). Mutations that alter a conserved element upstream of the potato virus X triple block and coat protein genes affect subgenomic RNA accumulation. Virology 232, 187-197. (Pubitemid 27244476)
14. Kim, K-.H., Kwon, S.-J., and Hemenway, C. (2002). Cellular protein binds to sequences near the 5′ terminus of Potato virus X RNA that are important for virus replication. Virology 301, 305-312. (Pubitemid 35176554)
15. Kim, M.J., Huh, S.U., Ham, B.K., and Paek, K.H. (2008). A novel methyltransferase methylates Cucumber mosaic virus 1a protein and promotes systemic spread. J. Virol. 82, 4823-4833.
16. Kragler, F., Curin, M., Trutnyeva, K., Gansch, A., and Waigmann, E. (2003). MPB2C, a microtubule-associated plant protein binds to and interferes with cell-to-cell transport of Tobacco mosaic virus movement protein. Plant Physiol. 132, 1870-1883. (Pubitemid 37024149)
17. Kwon, S.-J., and Kim, K.-H. (2006). The SL1 stem-loop structure at the 5′-end of Potato virus X RNA is required for efficient binding to host proteins and for viral infectivity. Mol. Cells 21, 63-75.
18. Kwon, S.-J., Park, M.-R., Kim, K.-W., Plante, C.A., Hemenway, C.L., and Kim, K.-H. (2005). cis-Acting sequences required for coat protein binding and in vitro assembly of Potato virus X. Virology 334, 83-97. (Pubitemid 40320737)
19. Lough, T.J., Lee, R.H., Emerson, S.J., Forster, R.L., and Lucas, W.J. (2006). Functional analysis of the 5′ untranslated region of potexvirus RNA reveals a role in viral replication and cell-to-cell movement. Virology 351, 455-465. (Pubitemid 44108069)
20. Matsushita, Y., Miyakawa, O., Deguchi, M., Nishiguchi, M., and Nyunoya, H. (2002). Cloning of a tobacco cDNA coding for a putative transcriptional coactivator MBF1 that interacts with the tomato mosaic virus movement protein. J. Exp. Bot. 53, 1531-1532. (Pubitemid 34589569)
21. Miller, E.D., Plante, C.A., Kim, K.-H., Brown, J.W., and Hemenway, C. (1998). Stem-loop structure in the 5′ region of potato virus X genome required for plus-strand RNA accumulation. J. Mol. Biol. 284, 591-608. (Pubitemid 28550008)
22. Nakhasi, H.L., Rouault, T.A., Haile, D.J., Liu, T.Y., and Klausner, R.D. (1990). Specific high-affinity binding of host cell proteins to the 3′ region of rubella virus RNA. New Biol. 2, 255-264. (Pubitemid 20187147)
23. Nicholson, B.L., Wu, B.D., Chevtchenko, I., and White, K.A. (2010). Tombusvirus recruitment of host translational machinery via the 3′ UTR. RNA 16, 1402-1419.
24. Park, S.-H., and Kim, K.-H. (2006). Agroinfiltration-based Potato virus X replicons to dissect the requirements of viral infection. Plant Pathol. J. 22, 386-390.
25. Park, S.-H., and Kim, K.-H. (2012). Virus-induced silencing of the WRKY1 transcription factor that interacts with the SL1 structure of Potato virus X leads to higher viral RNA accumulation and severe necrotic symptoms. Plant Pathol. J. 28, 40-48.
26. Peal, L., Jambunathan, N., and Mahalingam, R. (2011). Phyloge-netic and expression analysis of RNA-binding proteins with triple RNA recognition motifs in plants. Mol. Cells 31, 55-64.
27. Schiff, L.A., Nibert, M.L., Co, M.S., Brown, E.G., and Fields, B.N. (1988). Distinct binding sites for zinc and double-stranded RNA in the reovirus outer capsid protein sigma 3. Mol. Cell. Biol. 8, 273-283.
28. Scholthof, K.B., Adkins, S., Czosnek, H., Palukaitis, P., Jacquot, E., Hohn, T., Hohn, B., Saunders, K., Candresse, T., Ahlquist, P., et al. (2011). Top 10 plant viruses in molecular plant pathology. Mol. Plant Pathol. 12, 938-954.
29. Shimizu, T., Yoshii, A., Sakurai, K., Hamada, K., Yamaji, Y., Suzuki, M., Namba, S., and Hibi, T. (2009). Identification of a novel tobacco DnaJ-like protein that interacts with the movement protein of Tobacco mosaic virus. Arch. Virol. 154, 959-967.
30. Sriskanda, V.S., Pruss, G., Ge, X., and Vance, V.B. (1996). An eight-nucleotide sequence in the potato virus X 3′ untranslated region is required for both host protein binding and viral multiplication. J. Virol. 70, 5266-5271. (Pubitemid 26240699)
31. Yamanaka, T., Ohta, T., Takahashi, M., Meshi, T., Schmidt, R., Dean, C., Naito, S., and Ishikawa, M. (2000). TOM1, an Arabi-dopsis gene required for efficient multiplication of a tobamovirus, encodes a putative transmembrane protein. Proc. Natl. Acad. Sci. USA 97, 10107-10112.