Structural homology between bamboo mosaic virus and its satellite RNAs in the 5′ untranslated region

Journal of General Virology

Volumn 91, Issue 3, 2010, Pages 782-787

  Chen, Shih Cheng ^a   Desprez, Adeline ^a   Olsthoorn, René C L ^a  

^a LEIDEN UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC RNA; SATELLITE RNA; VIRUS RNA;

5' UNTRANSLATED REGION; AMINO ACID SUBSTITUTION; ARTICLE; MOLECULAR INTERACTION; MOSAIC VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POTEXVIRUS; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; RNA SEQUENCE; RNA STRUCTURE; STRUCTURAL HOMOLOGY; SYMPTOM; VIRAL PLANT DISEASE; VIRUS CELL INTERACTION; VIRUS MORPHOLOGY; VIRUS REPLICATION; VIRUS STRAIN;

5' UNTRANSLATED REGIONS; BAMBUSA; DNA MUTATIONAL ANALYSIS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PHYLOGENY; POTEXVIRUS; RNA, DOUBLE-STRANDED; RNA, SATELLITE; SEQUENCE HOMOLOGY, NUCLEIC ACID;

BAMBOO MOSAIC VIRUS;

EID: 76849087312     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.015941-0     Document Type: Article

References (24)

1. Annamalai, P., Hsu, Y. H., Liu, Y. P., Tsai, C. H. & Lin, N. S. (2003). Structural and mutational analyses of cis-acting sequences in the 5′-untranslated region of satellite RNA of bamboo mosaic potexvirus. Virology 311, 229-239.
2. Bink, H. H. J., Hellendoorn, K., van der Meulen, J. & Pleij, C. W. A. (2002). Protonation of non-Watson-Crick base pairs and encapsidation of turnip yellow mosaic virus RNA. Proc Natl Acad Sci U S A 99, 13465-13470.
3. Chang, B. Y., Lin, N. S., Liou, D. Y., Chen, J. P., Liou, G. G. & Hsu, Y. H. (1997). Subcellular localization of the 28 kDa protein of the triple-gene-block of bamboo mosaic potexvirus. J Gen Virol 78, 1175-1179.
4. Chen, I. H., Chou, W. J., Lee, P. Y., Hsu, Y. H. & Tsai, C. H. (2005). The AAUAAA motif of bamboo mosaic virus RNA is involved in minusstrand RNA synthesis and plus-strand RNA polyadenylation. J Virol 79, 14555-14561.
5. Chen, H. C., Hsu, Y. H. & Lin, N. S. (2007a). Downregulation of Bamboo mosaic virus replication requires the 5′ apical hairpin stem loop structure and sequence of satellite RNA. Virology 365, 271-284.
6. Chen, S. C., van den Born, E., van den Worm, S. H., Pleij, C. W. A., Snijder, E. J. & Olsthoorn, R. C. L. (2007b). New structure model for the packaging signal in the genome of group IIa coronaviruses. J Virol 81, 6771-6774.
7. Cheng, C. P. & Tsai, C. H. (1999). Structural and functional analysis of the 39 untranslated region of bamboo mosaic potexvirus genomic RNA. J Mol Biol 288, 555-565.
8. Cheng, J. H., Peng, C. W., Hsu, Y. H. & Tsai, C. H. (2002). The synthesis of minus-strand RNA of bamboo mosaic potexvirus initiates from multiple sites within the poly(A) tail. J Virol 76, 6114-6120.
9. Hellendoorn, K., Verlaan, P. W. & Pleij, C. W. A. (1997). A functional role for the conserved protonatable hairpins in the 5′ untranslated region of turnip yellow mosaic virus RNA. J Virol 71, 8774-8779.
10. Hsu, Y. H., Lee, Y. S., Liu, J. S. & Lin, N. S. (1998). Differential interactions of bamboo mosaic potexvirus satellite RNAs, helper virus, and host plants. Mol Plant Microbe Interact 11, 1207-1213.
11. Huang, C. Y., Huang, Y. L., Meng, M., Hsu, Y. H. & Tsai, C. H. (2001). Sequences at the 3′ untranslated region of bamboo mosaic potexvirus RNA interact with the viral RNA-dependent RNA polymerase. J Virol 75, 2818-2824.
12. Kwon, S. J., Park, M. R., Kim, K. W., Plante, C. A., Hemenway, C. L. & Kim, K. H. (2005). cis-Acting sequences required for coat protein binding and in vitro assembly of Potato virus X. Virology 334, 83-97.
13. Lin, N. S. & Hsu, Y. H. (1994). A satellite RNA associated with bamboo mosaic potexvirus. Virology 202, 707-714.
14. Lin, N. S., Lin, B. Y., Lo, N. W., Hu, C. C., Chow, T. Y. & Hsu, Y. H. (1994). Nucleotide sequence of the genomic RNA of bamboo mosaic potexvirus. J Gen Virol 75, 2513-2518.
15. Lin, M. K., Chang, B. Y., Liao, J. T., Lin, N. S. & Hsu, Y. H. (2004). Arg-16 and Arg-21 in the N-terminal region of the triple-gene-block protein 1 of Bamboo mosaic virus are essential for virus movement. J Gen Virol 85, 251-259.
16. Lin, J. W., Chiu, H. N., Chen, I. H., Chen, T. C., Hsu, Y. H. & Tsai, C. H. (2005). Structural and functional analysis of the cis-acting elements required for plus-strand RNA synthesis of Bamboo mosaic virus. J Virol 79, 9046-9053.
17. Lough, T. J., Lee, R. H., Emerson, S. J., Forster, R. L. & Lucas, W. J. (2006). Functional analysis of the 5′ untranslated region of potexvirus RNA reveals a role in viral replication and cell-to-cell movement. Virology 351, 455-465.
18. Lowman, H. B. & Draper, D. E. (1986). On the recognition of helical RNA by cobra venom V1 nuclease. J Biol Chem 261, 5396-5403.
19. Miller, E. D., Plante, C. A., Kim, K. H., Brown, J. W. & Hemenway, C. (1998). Stem-loop structure in the 5′ region of potato virus X genome required for plus-strand RNA accumulation. J Mol Biol 284, 591-608.
20. Miller, E. D., Kim, K. H. & Hemenway, C. (1999). Restoration of a stem-loop structure required for potato virus X RNA accumulation indicates selection for a mismatch and a GNRA tetraloop. Virology 260, 342-353.
21. Simon, A. E., Roossinck, M. J. & Havelda, Z. (2004). Plant virus satellite and defective interfering RNAs: new paradigms for a new century. Annu Rev Phytopathol 42, 415-437.
22. Tsai, C. H., Cheng, C. P., Peng, C. W., Lin, B. Y., Lin, N. S. & Hsu, Y. H. (1999). Sufficient length of a poly(A) tail for the formation of a potential pseudoknot is required for efficient replication of bamboo mosaic potexvirus RNA. J Virol 73, 2703-2709.
23. Yeh, T. Y., Lin, B. Y., Chang, Y. C., Hsu, Y. H. & Lin, N. S. (1999). A defective RNA associated with bamboo mosaic virus and the possible common mechanisms for RNA recombination in potexviruses. Virus Genes 18, 121-128.
24. Zuker, M. (2003). Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31, 3406-3415.