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Volumn 49, Issue 3, 2012, Pages 219-226

Peripheral blood gene expression changes during allergen inhalation challenge in atopic asthmatic individuals

Author keywords

Factor analysis for robust microarray summarization; Globin mRNA reduction; Linear models for microarrays; Microarray analysis

Indexed keywords

ALLERGEN; EDETIC ACID; GLOBIN; MESSENGER RNA; METHACHOLINE; PAIRED BOX TRANSCRIPTION FACTOR;

EID: 84863404393     PISSN: 02770903     EISSN: 15324303     Source Type: Journal    
DOI: 10.3109/02770903.2011.654300     Document Type: Article
Times cited : (16)

References (28)
  • 1
    • 33646087412 scopus 로고    scopus 로고
    • A highly standardized, robust, and cost-effective method for genome-wide tran-scriptome analysis of peripheral blood applicable to large-scale clinical trials
    • Debey S, Zander T, Brors B, Popov A, Eils R, Schultze JL. A highly standardized, robust, and cost-effective method for genome-wide tran-scriptome analysis of peripheral blood applicable to large-scale clinical trials. Genomics 2006; 87(5):653-664.
    • (2006) Genomics , vol.87 , Issue.5 , pp. 653-664
    • Debey, S.1    Zander, T.2    Brors, B.3    Popov, A.4    Eils, R.5    Schultze, J.L.6
  • 2
    • 14744272475 scopus 로고    scopus 로고
    • Global gene expression profiling in whole-blood samples from individuals exposed to metal fumes
    • DOI 10.1289/txg.7273
    • Wang Z, Neuburg D, Li C, Su L, Kim JY, Chen JC, Christiani DC. Global gene expression profiling in whole-blood samples from individuals exposed to metal fumes. Environ Health Perspect 2005; 113(2): 233-241. (Pubitemid 40326336)
    • (2005) Environmental Health Perspectives , vol.113 , Issue.2 , pp. 233-241
    • Wang, Z.1    Neuburg, D.2    Li, C.3    Su, L.4    Kim, J.Y.5    Chen, J.C.6    Christiani, D.C.7
  • 3
    • 27344453400 scopus 로고    scopus 로고
    • Overcoming challenges of using blood samples with gene expression microarrays to advance patient stratification in clinical trials
    • DOI 10.1016/S1359-6446(05)03644-5, PII S1359644605036445
    • McPhail S, Goralski TJ. Overcoming challenges of using blood samples with gene expression microarrays to advance patient stratification in clinical trials. Drug Discov Today 2005; 10(22):1485-1487. (Pubitemid 41527185)
    • (2005) Drug Discovery Today , vol.10 , Issue.22 , pp. 1485-1487
    • McPhail, S.1    Goralski, T.J.2
  • 4
    • 41249099497 scopus 로고    scopus 로고
    • Comparison of globin RNA processing methods for genome-wide transcriptome analysis from whole blood
    • DOI 10.2217/17520363.2.1.11
    • Dumeaux V, Lund E, Børresen-Dale A-L. Comparison of globin RNA processing methods for genome-wide transcriptome analysis from whole blood. BiomarkMed 2008; 2(1):11-21. (Pubitemid 351445076)
    • (2008) Biomarkers in Medicine , vol.2 , Issue.1 , pp. 11-21
    • Dumeaux, V.1    Lund, E.2    Borresen-Dale, A.-L.3
  • 5
    • 35848963206 scopus 로고    scopus 로고
    • Allergen inhalation challenge: A human model of asthma exacerbation
    • Gauvreau GM, Evans MY. Allergen inhalation challenge: a human model of asthma exacerbation. Contrib Microbiol 2007; 14:21-32.
    • (2007) Contrib Microbiol , vol.14 , pp. 21-32
    • Gauvreau, G.M.1    Evans, M.Y.2
  • 6
    • 77949511131 scopus 로고    scopus 로고
    • Allergen challenge induces ifng dependent gtpases in the lungs as part of a th1 transcriptome response in a murine model of allergic asthma
    • Dharajiya N, Vaidya S, Sinha M, Luxon B, Boldogh I, Sur S. Allergen challenge induces Ifng dependent GTPases in the lungs as part of a Th1 transcriptome response in a murine model of allergic asthma. PLoS One 2009; 4(12):e8172.
    • (2009) PLoS One , vol.4 , Issue.12
    • Dharajiya, N.1    Vaidya, S.2    Sinha, M.3    Luxon, B.4    Boldogh, I.5    Sur, S.6
  • 10
    • 0017654803 scopus 로고
    • Bronchial reactivity to inhaled histamine: a method and clinical survey
    • Cockcroft DW, Killian DN, Mellon JJ, Hargreave FE. Bronchial reactivity to inhaled histamine: a method and clinical survey. Clin Allergy 1977; 7(3):235-243. (Pubitemid 8159924)
    • (1977) Clinical Allergy , vol.7 , Issue.3 , pp. 235-243
    • Cockcroft, D.W.1    Killian, D.N.2    Mellon, J.J.A.3    Hargreave, F.E.4
  • 11
    • 0001902120 scopus 로고    scopus 로고
    • Measure of airway responsiveness to inhaled histamine or methacholine; Method of continuous aerosol generation and tidal breathing inhalation
    • Hargreave FE, Woolcock AJ, eds
    • Cockcroft DW. Measure of airway responsiveness to inhaled histamine or methacholine; method of continuous aerosol generation and tidal breathing inhalation. In: Hargreave FE, Woolcock AJ, eds. Airway Responsiveness: Measurement and Interpretation. Mississauga: Astra Pharmaceuticals, 1996:22.
    • (1996) Airway Responsiveness: Measurement and Interpretation. Mississauga: Astra Pharmaceuticals , pp. 22
    • Cockcroft, D.W.1
  • 12
    • 0023129148 scopus 로고
    • Prediction of airway responsiveness to allergen from skin sensitivity to allergen and airway responsiveness to histamine
    • Cockcroft DW, Murdock KY, Kirby J, Hargreave F. Prediction of airway responsiveness to allergen from skin sensitivity to allergen and airway responsiveness to histamine. Am Rev Respir Dis 1987; 135(1):264-267. (Pubitemid 17010674)
    • (1987) American Review of Respiratory Disease , vol.135 , Issue.1 , pp. 264-267
    • Cockcroft, D.W.1    Murdock, K.Y.2    Kirby, J.3    Hargreave, F.4
  • 15
    • 45249111019 scopus 로고    scopus 로고
    • Affymetrix Whole-Transcript Human Gene 1.0 ST array is highly concordant with standard 3′ expression arrays
    • DOI 10.2144/000112751
    • Pradervand S, Paillusson A, Thomas J, Weber J, Wirapati P, Hagenbüchle O, Harshman K. Affymetrix Whole-Transcript Human Gene 1.0 ST array is highly concordant with standard 3' expression arrays. Biotechniques 2008; 44(6):759-762. (Pubitemid 351839144)
    • (2008) BioTechniques , vol.44 , Issue.6 , pp. 759-762
    • Pradervand, S.1    Paillusson, A.2    Thomas, J.3    Weber, J.4    Wirapati, P.5    Hagenbuchle, O.6    Harshman, K.7
  • 16
    • 33645823677 scopus 로고    scopus 로고
    • A new summarization method for affymetrix probe level data
    • Hochreiter S, Clevert D-A, Obermayer K. A new summarization method for Affymetrix probe level data. Bioinformatics 2006; 22(8):943-949.
    • (2006) Bioinformatics , vol.22 , Issue.8 , pp. 943-949
    • Hochreiter, S.1    Clevert, D.-A.2    Obermayer, K.3
  • 17
    • 36448929060 scopus 로고    scopus 로고
    • I/NI-calls for the exclusion of non-informative genes: A highly effective filtering tool for microarray data
    • DOI 10.1093/bioinformatics/btm478
    • Talloen W, Clevert D-A, Hochreiter S, Amaratunga D, Bijnens L, Kass S, Göhlmann HW. I/NI-calls for the exclusion of non-informative genes: a highly effective filtering tool for microarray data. Bioinformatics 2007; 23(21):2897-2902. (Pubitemid 350162896)
    • (2007) Bioinformatics , vol.23 , Issue.21 , pp. 2897-2902
    • Talloen, W.1    Clevert, D.-A.2    Hochreiter, S.3    Amaratunga, D.4    Bijnens, L.5    Kass, S.6    Gohlmann, H.W.H.7
  • 18
    • 77953095629 scopus 로고    scopus 로고
    • Independent filtering increases detection power for high-throughput experiments
    • Bourgon R, Gentleman R, Huber W. Independent filtering increases detection power for high-throughput experiments. Proc Natl Acad Sci USA 2010; 107(21):9546-9551.
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.21 , pp. 9546-9551
    • Bourgon, R.1    Gentleman, R.2    Huber, W.3
  • 19
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • Smyth GK. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 2004; 3:Article3.
    • (2004) Stat Appl Genet Mol Biol , vol.3
    • Smyth, G.K.1
  • 20
    • 1342288026 scopus 로고    scopus 로고
    • Affy - Analysis of Affymetrix GeneChip data at the probe level
    • DOI 10.1093/bioinformatics/btg405
    • Gautier L, Cope L, Bolstad BM, Irizarry RA. affy-analysis of Affymetrix GeneChip data at the probe level. Bioinforma 2004; 20(3): 307-315. (Pubitemid 38262761)
    • (2004) Bioinformatics , vol.20 , Issue.3 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3    Irizarry, R.A.4
  • 21
    • 2642574503 scopus 로고    scopus 로고
    • Team RDCR R Foundation for Statistical Computing, Vienna, Austria
    • Team RDC. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria, 2006.
    • (2006) A Language and Environment for Statistical Computing
  • 22
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Series B 1995; 57(1):289-300.
    • (1995) J R Stat Soc Series B , vol.57 , Issue.1 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 23
    • 84863418081 scopus 로고    scopus 로고
    • Ingenuity Pathways Analysis software Accessed on: November 23, 2011
    • Ingenuity Pathways Analysis software. Available at: http://www. ingenuity.com/Accessed on: November 23, 2011
  • 24
    • 33947598182 scopus 로고    scopus 로고
    • Functional identity of genes detectable in expression profiling assays following globin mRNA reduction of peripheral blood samples
    • DOI 10.1016/j.clinbiochem.2007.01.004, PII S0009912007000458
    • Field LA, Jordan RM, Hadix JA, Dunn MA, Shriver CD, Ellsworth RE, Ellsworth DL. Functional identity of genes detectable in expression profiling assays following globin mRNA reduction of peripheral blood samples. Clin Biochem 2007; 40(7):499-502. (Pubitemid 46483331)
    • (2007) Clinical Biochemistry , vol.40 , Issue.7 , pp. 499-502
    • Field, L.A.1    Jordan, R.M.2    Hadix, J.A.3    Dunn, M.A.4    Shriver, C.D.5    Ellsworth, R.E.6    Ellsworth, D.L.7
  • 25
    • 68149116257 scopus 로고    scopus 로고
    • Characterization of whole blood gene expression profiles as a sequel to globin mRNA reduction in patients with sickle cell disease
    • Raghavachari N, Xu X, Munson PJ, Gladwin MT. Characterization of whole blood gene expression profiles as a sequel to globin mRNA reduction in patients with sickle cell disease. PLoS One 2009; 4(8): e6484.
    • (2009) PLoS One , vol.4 , Issue.8
    • Raghavachari, N.1    Xu, X.2    Munson, P.J.3    Gladwin, M.T.4
  • 26
    • 3242694676 scopus 로고    scopus 로고
    • Globin reduction protocol: A method for processing whole blood RNA samples for improved array results
    • Accessed on: September 3, 2010
    • Wu K, Miyada G, Martin J, Finkelstein D. Globin reduction protocol: a method for processing whole blood RNA samples for improved array results. Affymetrix technical note. 2003. Available at: http://media. affymetrix.com:80/support/technical/technotes/blood2-technote.pdf. Accessed on: September 3, 2010
    • (2003) Affymetrix Technical Note.
    • Wu, K.1    Miyada, G.2    Martin, J.3    Finkelstein, D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.