-
1
-
-
33646087412
-
A highly standardized, robust, and cost-effective method for genome-wide tran-scriptome analysis of peripheral blood applicable to large-scale clinical trials
-
Debey S, Zander T, Brors B, Popov A, Eils R, Schultze JL. A highly standardized, robust, and cost-effective method for genome-wide tran-scriptome analysis of peripheral blood applicable to large-scale clinical trials. Genomics 2006; 87(5):653-664.
-
(2006)
Genomics
, vol.87
, Issue.5
, pp. 653-664
-
-
Debey, S.1
Zander, T.2
Brors, B.3
Popov, A.4
Eils, R.5
Schultze, J.L.6
-
2
-
-
14744272475
-
Global gene expression profiling in whole-blood samples from individuals exposed to metal fumes
-
DOI 10.1289/txg.7273
-
Wang Z, Neuburg D, Li C, Su L, Kim JY, Chen JC, Christiani DC. Global gene expression profiling in whole-blood samples from individuals exposed to metal fumes. Environ Health Perspect 2005; 113(2): 233-241. (Pubitemid 40326336)
-
(2005)
Environmental Health Perspectives
, vol.113
, Issue.2
, pp. 233-241
-
-
Wang, Z.1
Neuburg, D.2
Li, C.3
Su, L.4
Kim, J.Y.5
Chen, J.C.6
Christiani, D.C.7
-
3
-
-
27344453400
-
Overcoming challenges of using blood samples with gene expression microarrays to advance patient stratification in clinical trials
-
DOI 10.1016/S1359-6446(05)03644-5, PII S1359644605036445
-
McPhail S, Goralski TJ. Overcoming challenges of using blood samples with gene expression microarrays to advance patient stratification in clinical trials. Drug Discov Today 2005; 10(22):1485-1487. (Pubitemid 41527185)
-
(2005)
Drug Discovery Today
, vol.10
, Issue.22
, pp. 1485-1487
-
-
McPhail, S.1
Goralski, T.J.2
-
4
-
-
41249099497
-
Comparison of globin RNA processing methods for genome-wide transcriptome analysis from whole blood
-
DOI 10.2217/17520363.2.1.11
-
Dumeaux V, Lund E, Børresen-Dale A-L. Comparison of globin RNA processing methods for genome-wide transcriptome analysis from whole blood. BiomarkMed 2008; 2(1):11-21. (Pubitemid 351445076)
-
(2008)
Biomarkers in Medicine
, vol.2
, Issue.1
, pp. 11-21
-
-
Dumeaux, V.1
Lund, E.2
Borresen-Dale, A.-L.3
-
5
-
-
35848963206
-
Allergen inhalation challenge: A human model of asthma exacerbation
-
Gauvreau GM, Evans MY. Allergen inhalation challenge: a human model of asthma exacerbation. Contrib Microbiol 2007; 14:21-32.
-
(2007)
Contrib Microbiol
, vol.14
, pp. 21-32
-
-
Gauvreau, G.M.1
Evans, M.Y.2
-
6
-
-
77949511131
-
Allergen challenge induces ifng dependent gtpases in the lungs as part of a th1 transcriptome response in a murine model of allergic asthma
-
Dharajiya N, Vaidya S, Sinha M, Luxon B, Boldogh I, Sur S. Allergen challenge induces Ifng dependent GTPases in the lungs as part of a Th1 transcriptome response in a murine model of allergic asthma. PLoS One 2009; 4(12):e8172.
-
(2009)
PLoS One
, vol.4
, Issue.12
-
-
Dharajiya, N.1
Vaidya, S.2
Sinha, M.3
Luxon, B.4
Boldogh, I.5
Sur, S.6
-
7
-
-
67649213033
-
Social stress enhances allergen-induced airway inflammation in mice and inhibits corticosteroid responsiveness of cytokine production
-
Bailey MT, Kierstein S, Sharma S, Spaits M, Kinsey SG, Tliba O, Amrani Y, Sheridan JF, Panettieri RA, Haczku A. Social stress enhances allergen-induced airway inflammation in mice and inhibits corticosteroid responsiveness of cytokine production. J Immunol 2009; 182(12): 7888-7896.
-
(2009)
J Immunol
, vol.182
, Issue.12
, pp. 7888-7896
-
-
Bailey, M.T.1
Kierstein, S.2
Sharma, S.3
Spaits, M.4
Kinsey, S.G.5
Tliba, O.6
Amrani, Y.7
Sheridan, J.F.8
Panettieri, R.A.9
Haczku, A.10
-
8
-
-
0038600272
-
Microarray profile of differentially expressed genes in a monkey model of allergic asthma
-
Zou J, Young S, Zhu F, Gheyas F, Skeans S, Wan Y, Wang L, Ding W, Billah M, McClanahan T, Coffman RL, Egan R, Umland S. Microarray profile of differentially expressed genes in a monkey model of allergic asthma. Genome Biol 2002; 3(5):research0020.
-
(2002)
Genome Biol
, vol.3
, Issue.5
-
-
Zou, J.1
Young, S.2
Zhu, F.3
Gheyas, F.4
Skeans, S.5
Wan, Y.6
Wang, L.7
Ding, W.8
Billah, M.9
McClanahan, T.10
Coffman, R.L.11
Egan, R.12
Umland, S.13
-
9
-
-
33745471091
-
Immunostimulatory sequences regulate interferon-inducible genes but not allergic airway responses
-
DOI 10.1164/rccm.200601-057OC
-
Gauvreau GM, Hessel EM, Boulet L-P, Coffman RL, O'Byrne PM. Immunostimulatory sequences regulate interferon-inducible genes but not allergic airway responses. Am J Respir Crit Care Med 2006; 174 (1):15-20. (Pubitemid 43955239)
-
(2006)
American Journal of Respiratory and Critical Care Medicine
, vol.174
, Issue.1
, pp. 15-20
-
-
Gauvreau, G.M.1
Hessel, E.M.2
Boulet, L.-P.3
Coffman, R.L.4
O'Byrne, P.M.5
-
10
-
-
0017654803
-
Bronchial reactivity to inhaled histamine: a method and clinical survey
-
Cockcroft DW, Killian DN, Mellon JJ, Hargreave FE. Bronchial reactivity to inhaled histamine: a method and clinical survey. Clin Allergy 1977; 7(3):235-243. (Pubitemid 8159924)
-
(1977)
Clinical Allergy
, vol.7
, Issue.3
, pp. 235-243
-
-
Cockcroft, D.W.1
Killian, D.N.2
Mellon, J.J.A.3
Hargreave, F.E.4
-
11
-
-
0001902120
-
Measure of airway responsiveness to inhaled histamine or methacholine; Method of continuous aerosol generation and tidal breathing inhalation
-
Hargreave FE, Woolcock AJ, eds
-
Cockcroft DW. Measure of airway responsiveness to inhaled histamine or methacholine; method of continuous aerosol generation and tidal breathing inhalation. In: Hargreave FE, Woolcock AJ, eds. Airway Responsiveness: Measurement and Interpretation. Mississauga: Astra Pharmaceuticals, 1996:22.
-
(1996)
Airway Responsiveness: Measurement and Interpretation. Mississauga: Astra Pharmaceuticals
, pp. 22
-
-
Cockcroft, D.W.1
-
12
-
-
0023129148
-
Prediction of airway responsiveness to allergen from skin sensitivity to allergen and airway responsiveness to histamine
-
Cockcroft DW, Murdock KY, Kirby J, Hargreave F. Prediction of airway responsiveness to allergen from skin sensitivity to allergen and airway responsiveness to histamine. Am Rev Respir Dis 1987; 135(1):264-267. (Pubitemid 17010674)
-
(1987)
American Review of Respiratory Disease
, vol.135
, Issue.1
, pp. 264-267
-
-
Cockcroft, D.W.1
Murdock, K.Y.2
Kirby, J.3
Hargreave, F.4
-
14
-
-
12444339770
-
The links between allergen skin test sensitivity, airway responsiveness and airway response to allergen
-
Cockcroft DW, Davis BE, Boulet L-P, Deschesnes F, Gauvreau GM, O'Byrne PM, Watson RM. The links between allergen skin test sensitivity, airway responsiveness and airway response to allergen. Allergy 2005; 60(1):56-59.
-
(2005)
Allergy
, vol.60
, Issue.1
, pp. 56-59
-
-
Cockcroft, D.W.1
Davis, B.E.2
Boulet, L.-P.3
Deschesnes, F.4
Gauvreau, G.M.5
O'Byrne, P.M.6
Watson, R.M.7
-
15
-
-
45249111019
-
Affymetrix Whole-Transcript Human Gene 1.0 ST array is highly concordant with standard 3′ expression arrays
-
DOI 10.2144/000112751
-
Pradervand S, Paillusson A, Thomas J, Weber J, Wirapati P, Hagenbüchle O, Harshman K. Affymetrix Whole-Transcript Human Gene 1.0 ST array is highly concordant with standard 3' expression arrays. Biotechniques 2008; 44(6):759-762. (Pubitemid 351839144)
-
(2008)
BioTechniques
, vol.44
, Issue.6
, pp. 759-762
-
-
Pradervand, S.1
Paillusson, A.2
Thomas, J.3
Weber, J.4
Wirapati, P.5
Hagenbuchle, O.6
Harshman, K.7
-
16
-
-
33645823677
-
A new summarization method for affymetrix probe level data
-
Hochreiter S, Clevert D-A, Obermayer K. A new summarization method for Affymetrix probe level data. Bioinformatics 2006; 22(8):943-949.
-
(2006)
Bioinformatics
, vol.22
, Issue.8
, pp. 943-949
-
-
Hochreiter, S.1
Clevert, D.-A.2
Obermayer, K.3
-
17
-
-
36448929060
-
I/NI-calls for the exclusion of non-informative genes: A highly effective filtering tool for microarray data
-
DOI 10.1093/bioinformatics/btm478
-
Talloen W, Clevert D-A, Hochreiter S, Amaratunga D, Bijnens L, Kass S, Göhlmann HW. I/NI-calls for the exclusion of non-informative genes: a highly effective filtering tool for microarray data. Bioinformatics 2007; 23(21):2897-2902. (Pubitemid 350162896)
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2897-2902
-
-
Talloen, W.1
Clevert, D.-A.2
Hochreiter, S.3
Amaratunga, D.4
Bijnens, L.5
Kass, S.6
Gohlmann, H.W.H.7
-
18
-
-
77953095629
-
Independent filtering increases detection power for high-throughput experiments
-
Bourgon R, Gentleman R, Huber W. Independent filtering increases detection power for high-throughput experiments. Proc Natl Acad Sci USA 2010; 107(21):9546-9551.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.21
, pp. 9546-9551
-
-
Bourgon, R.1
Gentleman, R.2
Huber, W.3
-
19
-
-
4544341015
-
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
-
Smyth GK. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 2004; 3:Article3.
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
-
-
Smyth, G.K.1
-
20
-
-
1342288026
-
Affy - Analysis of Affymetrix GeneChip data at the probe level
-
DOI 10.1093/bioinformatics/btg405
-
Gautier L, Cope L, Bolstad BM, Irizarry RA. affy-analysis of Affymetrix GeneChip data at the probe level. Bioinforma 2004; 20(3): 307-315. (Pubitemid 38262761)
-
(2004)
Bioinformatics
, vol.20
, Issue.3
, pp. 307-315
-
-
Gautier, L.1
Cope, L.2
Bolstad, B.M.3
Irizarry, R.A.4
-
21
-
-
2642574503
-
-
Team RDCR R Foundation for Statistical Computing, Vienna, Austria
-
Team RDC. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria, 2006.
-
(2006)
A Language and Environment for Statistical Computing
-
-
-
22
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Series B 1995; 57(1):289-300.
-
(1995)
J R Stat Soc Series B
, vol.57
, Issue.1
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
23
-
-
84863418081
-
-
Ingenuity Pathways Analysis software Accessed on: November 23, 2011
-
Ingenuity Pathways Analysis software. Available at: http://www. ingenuity.com/Accessed on: November 23, 2011
-
-
-
-
24
-
-
33947598182
-
Functional identity of genes detectable in expression profiling assays following globin mRNA reduction of peripheral blood samples
-
DOI 10.1016/j.clinbiochem.2007.01.004, PII S0009912007000458
-
Field LA, Jordan RM, Hadix JA, Dunn MA, Shriver CD, Ellsworth RE, Ellsworth DL. Functional identity of genes detectable in expression profiling assays following globin mRNA reduction of peripheral blood samples. Clin Biochem 2007; 40(7):499-502. (Pubitemid 46483331)
-
(2007)
Clinical Biochemistry
, vol.40
, Issue.7
, pp. 499-502
-
-
Field, L.A.1
Jordan, R.M.2
Hadix, J.A.3
Dunn, M.A.4
Shriver, C.D.5
Ellsworth, R.E.6
Ellsworth, D.L.7
-
25
-
-
68149116257
-
Characterization of whole blood gene expression profiles as a sequel to globin mRNA reduction in patients with sickle cell disease
-
Raghavachari N, Xu X, Munson PJ, Gladwin MT. Characterization of whole blood gene expression profiles as a sequel to globin mRNA reduction in patients with sickle cell disease. PLoS One 2009; 4(8): e6484.
-
(2009)
PLoS One
, vol.4
, Issue.8
-
-
Raghavachari, N.1
Xu, X.2
Munson, P.J.3
Gladwin, M.T.4
-
26
-
-
3242694676
-
Globin reduction protocol: A method for processing whole blood RNA samples for improved array results
-
Accessed on: September 3, 2010
-
Wu K, Miyada G, Martin J, Finkelstein D. Globin reduction protocol: a method for processing whole blood RNA samples for improved array results. Affymetrix technical note. 2003. Available at: http://media. affymetrix.com:80/support/technical/technotes/blood2-technote.pdf. Accessed on: September 3, 2010
-
(2003)
Affymetrix Technical Note.
-
-
Wu, K.1
Miyada, G.2
Martin, J.3
Finkelstein, D.4
-
27
-
-
33751186521
-
Effects of globin mRNA reduction methods on gene expression profiles from whole blood
-
DOI 10.2353/jmoldx.2006.060021
-
Liu J, Walter E, Stenger D, Thach D. Effects of globin mRNA reduction methods on gene expression profiles from whole blood. J Mol Diagn 2006; 8(5):551-558. (Pubitemid 44774153)
-
(2006)
Journal of Molecular Diagnostics
, vol.8
, Issue.5
, pp. 551-558
-
-
Liu, J.1
Walter, E.2
Stenger, D.3
Thach, D.4
Demitry, P.5
Holliday, R.6
Agan, B.7
Daum, L.8
Metzgar, D.9
Niemeyer, D.10
Russell, K.11
Archer, M.12
Bravo, R.13
Freed, N.14
Fuller, J.15
Gomez, J.16
Gratwick, K.17
Jenkins, M.18
Jesse, M.19
Johnson, B.20
Lawrence, E.21
Lin, B.22
Meador, C.23
Melgarejo, H.24
Mueller, K.25
Olsen, C.26
Pearson, D.27
Stotler, F.28
Wang, Z.29
Watson, D.30
Worthy, S.31
Vora, G.32
Myers, C.33
Grant, K.34
James, C.35
more..
-
28
-
-
38749116228
-
Interference of globin genes with biomarker discovery for allograft rejection in peripheral blood samples
-
DOI 10.1152/physiolgenomics.00216.2007
-
Li L, Ying L, Naesens M, Xiao W, Sigdel T, Hsieh S, Martin J, Chen R, Liu K, Mindrinos M, Davis R, Sarwal M. Interference of globin genes with biomarker discovery for allograft rejection in peripheral blood samples. Physiol Genomics 2008; 32(2):190-197. (Pubitemid 351186326)
-
(2008)
Physiological Genomics
, vol.32
, Issue.2
, pp. 190-197
-
-
Li, L.1
Ying, L.2
Naesens, M.3
Xiao, W.4
Sigdel, T.5
Hsieh, S.6
Martin, J.7
Chen, R.8
Liu, K.9
Mindrinos, M.10
Davis, R.11
Sarwal, M.12
|