Sphingobacterium wenxiniae sp. nov., a cypermethrin-degrading species from activated sludge

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue PART 3, 2012, Pages 683-687

  Zhang, Jun ^a   Zheng, Jin Wei ^a   Cho, Byung Cheol ^b   Hwang, Chung Yeon ^b   Fang, Chengxiang ^c   He, Jian ^a   Li, Shun Peng ^a  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

^b Seoul National University   (South Korea)

^c WUHAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON; CIPERMETHRIN; DNA; FATTY ACID; MENAQUINONE; RIBOSOME RNA; SODIUM CHLORIDE;

ACTIVATED SLUDGE; ARTICLE; BACTERIAL GENETICS; BACTERIUM ISOLATION; CHINA; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY; PRIORITY JOURNAL; SPHINGOBACTERIUM; SPHINGOBACTERIUM MIZUTAII; WASTE WATER TREATMENT PLANT;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHINA; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; HYDROGEN-ION CONCENTRATION; MOLECULAR SEQUENCE DATA; PHYLOGENY; PYRETHRINS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEWAGE; SODIUM CHLORIDE; SPHINGOBACTERIUM; TEMPERATURE; VITAMIN K 2;

BACTEROIDETES; NEGIBACTERIA; SPHINGOBACTERIUM;

EID: 84863296769     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.033118-0     Document Type: Article

References (37)

1. Altenburger, P., Kämpfer, P., Makristathis, A., Lubitz, W. & Busse, H.-J. (1996). Classification of bacteria isolated from a medieval wall painting. J Biotechnol 47, 39-52.
2. Bernardet, J.-F., Nakagawa, Y., Holmes, B. & Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
3. Breznak, J. A. & Costilow, R. N. (1994). Physicochemical factors in growth. In Methods for General and Molecular Bacteriology, pp. 137-154. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
4. Bruns, A., Rohde, M. & Berthe-Corti, L. (2001). Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment. Int J Syst Evol Microbiol 51, 1997-2006.
5. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y.-W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
6. Collins, M. D. & Jones, D. (1980). Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2,4-diaminobutyric acid. J Appl Bacteriol 48, 459-470.
7. Duan, S., Liu, Z., Feng, X., Zheng, K. & Cheng, L. (2009). Sphingobacterium bambusae sp. nov., isolated from soil of bamboo plantation. J Microbiol 47, 693-698.
8. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
9. Felsenstein, J. (1993). PHYLIP (phylogeny inference package) version 3.5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
10. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
11. He, X., Xiao, T., Kuang, H., Lan, X., Tudahong, M., Osman, G., Fang, C. & Rahman, E. (2010). Sphingobacterium shayense sp. nov., isolated from forest soil. Int J Syst Evol Microbiol 60, 2377-2381.
12. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
13. Katsuda, Y. (1999). Development of and future prospects for pyrethroid chemistry. Pestic Sci 55, 775-782.
14. Kim, K.-H., Ten, L. N., Liu, Q.-M., Im, W.-T. & Lee, S.-T. (2006). Sphingobacterium daejeonense sp. nov., isolated from a compost sample. Int J Syst Evol Microbiol 56, 2031-2036.
15. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
16. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
17. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
18. Liu, R., Liu, H., Zhang, C.-X., Yang, S.-Y., Liu, X.-H., Zhang, K.-Y. & Lai, R. (2008). Sphingobacterium siyangense sp. nov., isolated from farm soil. Int J Syst EvolMicrobiol 58, 1458-1462.
19. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
20. Matsuyama, H., Katoh, H., Ohkushi, T., Satoh, A., Kawahara, K. & Yumoto, I. (2008). Sphingobacterium kitahiroshimense sp. nov., isolated from soil. Int J Syst Evol Microbiol 58, 1576-1579.
21. Mehnaz, S., Weselowski, B. & Lazarovits, G. (2007). Sphingobacterium canadense sp. nov., an isolate from corn roots. Syst Appl Microbiol 30, 519-524.
22. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
23. Rzhetsky, A. & Nei, M. (1992). A simple method for estimating and testing minimum-evolution trees. Mol Biol Evol 9, 945-967.
24. Saha, S. & Kaviraj, A. (2008). Acute toxicity of synthetic pyrethroid cypermethrin to some freshwater organisms. Bull Environ Contam Toxicol 80, 49-52.
25. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
26. Sambrook, J. & Russell, D. W. (2001). Molecular Cloning: a Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
27. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
28. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
29. Smith, T. M. & Stratton, G. W. (1986). Effects of synthetic pyrethroid insecticides on nontarget organisms. Residue Rev 97, 93-120.
30. Steyn, P. L., Segers, P., Vancanneyt, M., Sandra, P., Kersters, K. & Joubert, J. J. (1998). Classification of heparinolytic bacteria into a new genus, Pedobacter, comprising four species: Pedobacter heparinus comb. nov., Pedobacter piscium comb. nov., Pedobacter africanus sp. nov. and Pedobacter saltans sp. nov. Proposal of the family Sphingobacteriaceae fam. nov. Int J Syst Bacteriol 48, 165-177.
31. Takeuchi, M. & Yokota, A. (1992). Proposals of Sphingobacterium faecium sp. nov., Sphingobacterium piscium sp. nov., Sphingobacterium heparinum comb. nov., Sphingobacterium thalpophilum comb. nov., and two genospecies of the genus Sphingobacterium and synonymy of Flavobacterium yabuuchiae and Sphingobacterium spiritivorum. J Gen Appl Microbiol 38, 465-482.
32. Ten, L. N., Liu, Q.-M., Im, W.-T., Aslam, Z. & Lee, S.-T. (2006). Sphingobacterium composti sp. nov., a novel DNase-producing bacterium isolated from compost. J Microbiol Biotechnol 16, 1728-1733.
33. Tindall, B. J. (1990a). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
34. Tindall, B. J. (1990b). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13, 128-130.
35. Wang, B.-Z., Guo, P., Hang, B.-J., Li, L., He, J. & Li, S.-P. (2009). Cloning of a novel pyrethroid-hydrolyzing carboxylesterase gene from Sphingobium sp. strain JZ-1 and characterization of the gene product. Appl Environ Microbiol 75, 5496-5500.
36. Wei, W., Zhou, Y., Wang, X., Huang, X. & Lai, R. (2008). Sphingobacterium anhuiense sp. nov., isolated from forest soil. Int J Syst Evol Microbiol 58, 2098-2101.
37. Yabuuchi, E., Kaneko, T., Yano, I., Moss, C. W. & Miyoshi, N. (1983). Sphingobacterium gen. nov., Sphingobacterium spiritivorum comb. nov., Sphingobacterium multivorum comb. nov., Sphingobacterium mizutae sp. nov., and Flavobacterium indologenes sp. nov.: glucosenonfermenting Gram-negative rods in CDC groups IIK-2 and IIb. Int J Syst Bacteriol 33, 580-598.