Species identification of Rhododendron (Ericaceae) using the chloroplast deoxyribonucleic acid PsbA-trnH genetic marker

Pharmacognosy Magazine

Volumn 8, Issue 29, 2012, Pages 29-36

  Liu, Yimei ^a   Zhang, Lehua ^b   Liu, Zhen ^a   Luo, Kun ^c   Chen, Shilin ^c   Chen, Keli ^a  

^a HUBEI UNIVERSITY OF CHINESE MEDICINE   (China)

^b INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^c INSTITUTE OF MEDICINAL PLANT DEVELOPMENT   (China)

Author keywords

Deoxyribonucleic acid barcoding; psbA trnH; Rhododendron; species identification

Indexed keywords

CHLOROPLAST DNA; DNA MATK; DNA PSBA; DNA PSBATRNH; DNA RBCL; DNA TRNH; INTERGENIC SPACER 2; SPACER DNA; UNCLASSIFIED DRUG;

ARTICLE; DNA BARCODING; DNA MARKER; MARKER GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; RHODODENDRON; SEQUENCE ANALYSIS; SPECIES IDENTIFICATION; UNINDEXED SEQUENCE; WILCOXON SIGNED RANKS TEST;

EID: 84863282036     PISSN: 09731296     EISSN: 09764062     Source Type: Journal    
DOI: 10.4103/0973-1296.93311     Document Type: Article

References (30)

1. Chamberlain DF, Hyam R, Argent G, Fairweather G, Walter KS. The genus Rhododendron: Its Classification and Synonymy. Edinburgh: Royal Botanic Gardens; 1996.
2. Fang MY, Fang RC, He MY, Hu LZ, Yang HB. Rhododendron Linnaeus. Flora China 2005;14:260-455.
3. Craven LA, Goetsch LA, Hall BD, Brown GK. Classification of the Vireya group of Rhododendron (Ericaceae). Blumea 2008;53:435-42.
4. Wang MJ. Study on Antitussive, Antiasthmatic Effects and Toxicity of Total Flavanoid of Rhododendron simsii Planch. Lishizhen Med Mater Med Res 2006;17:1678-9.
5. Xiang YN, Zhang CG, Zheng YJ. Studies on the Chemical Constituents of the roots of Rhododendron molle G. DON. J Huazhong Univ Sci Technol 2004;24:202-4.
6. Zhong GH, Hu MY. Advances in Studies on Activity Constituents of Ericaceae and Their Mechanisms. J Wuhan Bot Res 2000;18:509-14.
7. Sleumer H. Ein system der gattung Rhododendron L. Bot Jahrb Syst 1949;74:511-53.
8. Cox PA, Cox KN. Encyclopedia of Rhododendron species. Perth: Glendoick Publishing; 1997.
9. Hebert PD, Cywinska A, Ball SL, de Waard JR. Biological identifications through DNA barcodes. Proc Biol Sci 2003;270:313-21. (Pubitemid 36228536)
10. Han JP, Song JY, Liu C, Chen J, Qian J, Zhu YJ, et al. Identification of Cistanche species (Orobanchaceae) based on sequences of the plastid psbA-trnH intergenic region. Acta Pharmaceutica Sinica 2010;45:126-30.
11. CBOL Plant Working Group. A DNA barcode for land plants. Proc Natl Acad Sci USA 2009;106:12794-7.
12. Chen SL, Yao H, Han JP, Liu C, Song JY, Shi LC, et al. Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species. PLoS One 2010;5:e8613.
13. Ren BQ, Chen ZD. DNA Barcoding Plant Life. Chin Bull Bot 2010;45:1-12.
14. Nitta JH. Exploring the utility of three plastid loci for biocoding the filmy ferns (Hymenophyllaceae) of Moorea. Taxon 2008;57:725-36.
15. Newmaster SG, Fazekas AJ, Steeves RA, Janovec J. Testing candidate plant barcode regions in the Myristicaceae. Mol Ecol Resour 2008;8:480-90. (Pubitemid 351703576)
16. Meier R, Zhang GY, Ali F. The use of mean instead of smallest interspecific distances exaggerates the size of the "Barcoding Gap" and leads to misidentification. Syst Biol 2008;57:809-13.
17. Meyer CP, Paulay G. DNA barcoding: Error rates based on comprehensive sampling. PLoS Biol 2005;3:2229-38.
18. Lahaye R, van der Bank M, Bogarin D, Warner J, Pupulin F, Gigot G. DNA barcoding the floras of biodiversity hotspots. Proc Natl Acad Sci USA 2008;105:2923-8. (Pubitemid 351723645)
19. Kress WJ, Erickson DL. A Two-Locus Global DNA Barcode for Land Plants: The Coding rbcL Gene Complements the Non-Coding trnH-psbA Spacer Region. PLoS One 2007;2:e508.
20. Ross HA, Murugan S, Li WL. Testing the reliability of genetic methods of species identification via simulation. Syst Biol 2008;57:216-30. (Pubitemid 351502942)
21. Moritz C, Cicero C. DNA barcoding: Promises and pitfalls. PLoS Biol 2004;2:1529-34.
22. Slabbinck B, Dawyndt P, Martens M, De Vos P, De Baets B. TaxonGap: A visualization tool for intra-and inter-species variation among individual biomarkers. Bioinformatics 2008;24:866-7. (Pubitemid 351386928)
23. Miao M, Warren A, Song WB, Wang S, Shang HM, Chen ZG. Analysis of the internal transcribed spacer 2 (ITS2) region of scuticociliates and related taxa (Ciliophora, Oligohymenophorea) to infer their evolution and phylogeny. Protist 2008;159:519-33.
24. Schultz J, Maisel S, Gerlach D, Müller T, Wolf M. A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota. RNA 2005;11:361-4. (Pubitemid 40397169)
25. Storchová H, Olson MS. The architecture of the chloroplast psbA-trnH non-coding region in angiosperms. Plant Syst Evol 2007;268:235-56. (Pubitemid 351567335)
26. Ma YP, Zhang CQ, Zhang JL, Yang JB. Natural Hybridization between Rhododendron delavayi and R. cyanocarpum (Ericaceae), from Morphological, Molecular and Reproductive Evidence. J Integr Plant Biol 2010;52:844-51.
27. Kress WJ, Wurdack KJ, Zimmer EA, Weigt LA, Janzen DH. Use of DNA barcodes to identify flowering plants. Proc Natl Acad Sci USA 2005;102:8369-74. (Pubitemid 40803501)
28. Shaw J, Lickey EB, Schilling EE, Small RL. Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms. The tortoise and the hare III. Am J Bot 2007;94:275-88. (Pubitemid 46955026)
29. Song JY, Yao H, Li Y, Li XW, Liu C, Han JP, et al. Authentication of the family Polygonaceae in Chinese pharmacopoeia by DNA barcoding technique. J Ethnopharmacol 2009;124:434-9.
30. Yao H, Song JY, Ma XY, Liu C, Li Y, Xu HX, et al. Identification of Dendrobium species by a candidate DNA barcode sequence: The chloroplast psbA-trnH intergenic region. Planta Med 2009;75:667-9.