Nanouidic compaction of DNA by like-charged protein

Journal of Physical Chemistry B

Volumn 116, Issue 9, 2012, Pages 3031-3036

  Zhang, Ce ^a   Gong, Zongying ^a   Guttula, Durgarao ^a   Malar, Piravi P ^a   Van Kan, Jeroen A ^a   Doyle, Patrick S ^b,c   Van Der Maarel, Johan R C ^a,c  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^b Massachusetts Institute of Technology   (United States)

^c SINGAPORE MIT ALLIANCE FOR RESEARCH AND TECHNOLOGY   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

COMPACTION; CONDENSATION; FLUORESCENCE MICROSCOPY; IONIC STRENGTH; MOLECULES; PROTEINS;

BOVINE SERUM ALBUMINS; BULK PHASE; CHANNEL WALL; CHARGED PROTEINS; CRITICAL VALUE; DEPLETION INTERACTIONS; DNA MOLECULES; ENVIRONMENTAL CONDITIONS; NANO CHANNELS; NANOCONFINEMENTS; NARROW CHANNEL; SINGLE DNA MOLECULES; THRESHOLD CONCENTRATIONS;

DNA;

EID: 84863279577     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp2124907     Document Type: Article

References (29)

1. Zimmerman, S. B.; Minton, A. P. Annu. Rev. Biophys. Biomol. Struct. 1993, 22, 27-65
2. Lerman, L. S. Proc. Natl. Acad. Sci. U.S.A. 1971, 68, 1886-1890
3. Bloomfield, V. A. Curr. Opin. Struct. Biol. 1996, 6, 334-341
4. Kojima, M.; Kubo, K.; Yoshikawa, K. J. Chem. Phys. 2006, 124, 024902
5. Walter, H.; Brooks, D. E. FEBS Lett. 1995, 361, 135-139
6. Zimmerman, S. B.; Murphy, L. D. FEBS Lett. 1996, 390, 245-248
7. Murphy, L. D.; Zimmerman, S. B. Biophys. Chem. 1995, 57, 71-92
8. Allen, M. J.; Bradbury, E. M.; Balhorn, R. Nucleic Acids Res. 1997, 25, 2221-2226
9. Zhang, C.; van der Maarel, J. R. C. J. Phys. Chem. B 2008, 112, 3552-3557
10. Reisner, W.; Morton, K. J.; Riehn, R.; Wang, Y. M.; Yu, Z.; Rosen, M.; Sturm, J. C.; Chou, S. Y.; Frey, E.; Austin, R. H. Phys. Rev. Lett. 2005, 94, 196101
11. Persson, F.; Utko, P.; Reisner, W.; Larsen, N. B.; Kristensen, A. Nano Lett. 2009, 9, 1382-1385
12. Reisner, W.; Beech, J. P.; Larsen, N. B.; Flybjerg, H.; Kristensen, A.; Tegenfeldt, J. O. Phys. Rev. Lett. 2007, 99, 058302
13. Zhang, C.; Zhang, F.; van Kan, J. A.; van der Maarel, J. R. C. J. Chem. Phys. 2008, 128, 225109
14. Zhang, C.; Shao, P. G.; van Kan, J. A.; van der Maarel, J. R. C. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 16651-16656
15. Jones, J. J.; van der Maarel, J. R. C.; Doyle, P. S. Nano Lett. 2011, 11, 5047-5053
16. Yoshikawa, K.; Hirota, S.; Makita, N.; Yoshikawa, Y. J. Phys. Chem. Lett. 2010, 1, 1763-1766
17. Bohme, U.; Scheler, U. Chem. Phys. Lett. 2007, 435, 342-345
18. Lin, S. H.; Hung, C. L.; Juang, R. S. Desalination 2008, 234, 116-125
19. van Kan, J. A.; Bettiol, A. A.; Watt, F. Appl. Phys. Lett. 2003, 83, 1629-1631
20. van Kan, J. A.; Bettiol, A. A.; Watt, F. Nano Lett. 2006, 6, 579-582
21. Shao, P. G.; van Kan, J. A.; Ansari, K.; Bettiol, A. A.; Watt, F. Nucl. Instrum. Methods Phys. Res., Sect. B 2007, 260, 479-482
22. Johansen, F.; Jacobsen, J. P. J. Biomol. Struct. Dyn. 1998, 16, 205-222
23. Bakajin, O. B.; Duke, T. A. J.; Chou, C. F.; Chan, S. S.; Austin, R. H.; Cox, E. C. Phys. Rev. Lett. 1998, 80, 2737-1740
24. Das, S. K.; Austin, M. D.; Akana, M. C.; Deshpande, P.; Cao, H.; Xiao, M. Nucleic Acids Res. 2010, 38, e177
25. Tegenfeldt, J. O.; Prinz, C.; Cao, H.; Chou, S.; Reisner, W. W.; Riehn, R.; Wang, Y. M.; Cox, E. C.; Sturm, J. C.; Silberzan, P.; Austin, R. H. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 10979-10983
26. de Vries, R. J. Chem. Phys. 2008, 125, 014905
27. Asakura, S.; Oosawa, F. J. Chem. Phys. 1955, 22, 1255-1256
28. van der Maarel, J. R. C. Introduction to Biopolymer Physics; World Scientific: Singapore, 2008.
29. Daoud, M.; de Gennes, P. G. J. Phys. (Paris) 1977, 38, 85-93